Mock Version: 1.4.21 Mock Version: 1.4.21 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/apbs.spec'], chrootPath='/var/lib/mock/f33-build-274507-51618/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=432000uid=987gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/apbs.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1590883200 Wrote: /builddir/build/SRPMS/apbs-3.0.0-1.fc33.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/apbs.spec'], chrootPath='/var/lib/mock/f33-build-274507-51618/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=432000uid=987gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/apbs.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1590883200 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.9hdKw5 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf apbs-pdb2pqr-vAPBS-3.0.0 + /usr/bin/gzip -dc /builddir/build/SOURCES/apbs-pdb2pqr-vAPBS-3.0.0.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd apbs-pdb2pqr-vAPBS-3.0.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (apbs-cmake.patch):' Patch #0 (apbs-cmake.patch): + /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .apbs-cmake --fuzz=0 patching file apbs/CMakeLists.txt patching file apbs/src/CMakeLists.txt patching file apbs/tools/manip/CMakeLists.txt patching file apbs/tools/mesh/CMakeLists.txt + cp -p apbs/contrib/iapbs/COPYING apbs/contrib/iapbs/iapbs-COPYING + cp -p /builddir/build/SOURCES/apbs-LGPL_V2 apbs/contrib/iapbs/iapbs-LGPLv2 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.Ckf881 + umask 022 ~/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs ~/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 + cd /builddir/build/BUILD + cd apbs-pdb2pqr-vAPBS-3.0.0 + pushd apbs + export 'CFLAGS=-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm' + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm' + export 'CXXFLAGS=-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm' + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm' + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_DOC:BOOL=OFF -DCMAKE_BUILD_TYPE:STRING=Release -DENABLE_iAPBS:BOOL=ON -DENABLE_OPENMP:BOOL=ON -DENABLE_VERBOSE_DEBUG:BOOL=OFF -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES -DENABLE_FETK:BOOL=OFF -DENABLE_PYTHON:BOOL=ON . CMake Deprecation Warning at CMakeLists.txt:11 (cmake_policy): The OLD behavior for policy CMP0054 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. -- The C compiler identification is GNU 10.1.1 -- The CXX compiler identification is GNU 10.1.1 -- Check for working C compiler: /usr/bin/gcc -- Check for working C compiler: /usr/bin/gcc - works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/g++ -- Check for working CXX compiler: /usr/bin/g++ - works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Setting project paths -- Setting lookup paths for headers and libraries -- Computing machine epsilon values -- Floating point epsilon is 2.220446e-16 -- Double precision epsilon is 2.220446e-16 -- Looking for time -- Looking for time - found -- Looking for rand -- Looking for rand - found -- Looking for srand -- Looking for srand - found -- Inline functions enabled -- Checking for OpenMP -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- OpenMP support enabled -- Adding apbs_generic -- With source files nosh.c;mgparm.c;femparm.c;pbamparm.c;pbsamparm.c;pbeparm.c;bemparm.c;geoflowparm.c;apolparm.c;vacc.c;valist.c;vatom.c;vpbe.c;vcap.c;vclist.c;vstring.c;vparam.c;vgreen.c -- With external header files nosh.h;mgparm.h;femparm.h;pbamparm.h;pbsamparm.h;pbeparm.h;bemparm.h;geoflowparm.h;apolparm.h;vacc.h;valist.h;vatom.h;vpbe.h;vcap.h;vclist.h;vstring.h;vparam.h;vgreen.h;vmatrix.h;vhal.h;vunit.h -- With internal header files -- With library dependencies m;stdc++;maloc;-fopenmp -- Added apbs_generic -- Adding apbs_pmgc -- With source files buildAd.c;buildBd.c;buildGd.c;buildPd.c;cgd.c;gsd.c;matvecd.c;mgcsd.c;mgdrvd.c;mgsubd.c;mikpckd.c;mlinpckd.c;mypdec.c;newtond.c;newdrvd.c;powerd.c;smoothd.c;mgfasd.c -- With external header files buildAd.h;buildBd.h;buildGd.h;buildPd.h;cgd.h;gsd.h;matvecd.h;mgcsd.h;mgdrvd.h;mgsubd.h;mikpckd.h;mlinpckd.h;mypdec.h;newtond.h;newdrvd.h;powerd.h;smoothd.h;mgfasd.h -- With internal header files -- With library dependencies m;stdc++;maloc;-fopenmp -- Added apbs_pmgc -- Adding apbs_mg -- With source files vgrid.c;vmgrid.c;vopot.c;vpmg.c;vpmgp.c -- With external header files vgrid.h;vmgrid.h;vopot.h;vpmg.h;vpmgp.h -- With internal header files -- With library dependencies m;stdc++;maloc;-fopenmp;apbs_generic;apbs_pmgc -- Added apbs_mg -- Adding apbs_routines -- With source files routines.c -- With external header files -- With internal header files -- With library dependencies m;stdc++;maloc;-fopenmp -- Added apbs_routines -- External Headers: -- -- APBS Libraries: m;stdc++;maloc;-fopenmp -- Internal Libraries: apbs_generic;apbs_pmgc;apbs_mg;apbs_routines -- -- -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -- Supplemental tools enabled -- Building mesh -- libraries: apbs -- Building manip -- libraries: apbs -- Found SWIG: /usr/bin/swig (found version "4.0.0") -- Found Python3: /usr/bin/python3.9 (found version "3.9.0") found components: Interpreter Development -- ******* Python3 FOUND -- ***** Python3 include path is: /usr/include/python3.9 -- ***** Python3 library path is: /usr/lib64/libpython3.9.so -- ***** Python3 library dir is: /usr/lib64 -- Building of iAPBS interface enabled -- Found Python3: /usr/bin/python3.9 (found version "3.9.0") found components: Interpreter -- ******* Python3 FOUND /usr/bin/python3.9 -- TEST born_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/apbs -t born -- TEST actin-dimer-auto_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/apbs -t actin-dimer-auto -- TEST actin-dimer-parallel_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/apbs -t actin-dimer-parallel -- TEST alkanes_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/apbs -t alkanes -- TEST FKBP_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/apbs -t FKBP -- TEST hca-bind_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/apbs -t hca-bind -- TEST ionize_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/apbs -t ionize -- TEST ion-pmf_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/apbs -t ion-pmf -- TEST ion-protein_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/apbs -t ion-protein -- TEST pka-lig_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/apbs -t pka-lig -- TEST point-pmf_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/apbs -t point-pmf -- TEST solv_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/apbs -t solv -- TEST geoflow_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/apbs -t geoflow -- TEST bem_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/apbs -t bem -- TEST bem-pKa_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/apbs -t bem-pKa -- TEST bem-binding-energy_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/apbs -t bem-binding-energy -- TEST pbam_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/apbs -t pbam -- TEST pbsam_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/apbs -t pbsam -- TEST protein-rna_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/apbs -t protein-rna -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_SKIP_INSTALL_RPATH LIB_SUFFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs + /usr/bin/make -O -j4 V=1 VERBOSE=1 /usr/bin/cmake -S/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs -B/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/CMakeFiles /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f 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"/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/CMakeFiles/apbs_mg.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/CMakeFiles/apbs_mg.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/CMakeFiles/apbs_mg.dir/depend.internal". Scanning dependencies of target apbs_mg make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f src/mg/CMakeFiles/apbs_mg.dir/build.make src/mg/CMakeFiles/apbs_mg.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/CMakeFiles/apbs_generic.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/CMakeFiles/apbs_generic.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/CMakeFiles/apbs_generic.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/CMakeFiles/apbs_generic.dir/depend.internal". Scanning dependencies of target apbs_generic make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/CMakeFiles/apbs_routines.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/CMakeFiles/apbs_routines.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/CMakeFiles/apbs_routines.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/CMakeFiles/apbs_routines.dir/depend.internal". Scanning dependencies of target apbs_routines make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f src/CMakeFiles/apbs_routines.dir/build.make src/CMakeFiles/apbs_routines.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/CMakeFiles/apbs_pmgc.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/CMakeFiles/apbs_pmgc.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/CMakeFiles/apbs_pmgc.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/CMakeFiles/apbs_pmgc.dir/depend.internal". Scanning dependencies of target apbs_pmgc make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 4%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildAd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c: In function 'VbuildA': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:66:5: note: in expansion of macro 'MAT2' 66 | MAT2(ac, *nx * *ny * *nz, 14); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c: In function 'VbuildA_fv': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gzcf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:167:5: note: in expansion of macro 'MAT3' 167 | MAT3(gzcf, *nx, *ny, 2); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gycf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:166:5: note: in expansion of macro 'MAT3' 166 | MAT3(gycf, *nx, *nz, 2); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gxcf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:165:5: note: in expansion of macro 'MAT3' 165 | MAT3(gxcf, *ny, *nz, 2); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:164:5: note: in expansion of macro 'MAT3' 164 | MAT3( oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:163:5: note: in expansion of macro 'MAT3' 163 | MAT3( oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:162:5: note: in expansion of macro 'MAT3' 162 | MAT3( uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a3cf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:161:5: note: in expansion of macro 'MAT3' 161 | MAT3(a3cf, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a2cf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:160:5: note: in expansion of macro 'MAT3' 160 | MAT3(a2cf, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a1cf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:159:5: note: in expansion of macro 'MAT3' 159 | MAT3(a1cf, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:158:5: note: in expansion of macro 'MAT3' 158 | MAT3( oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_ccf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:157:5: note: in expansion of macro 'MAT3' 157 | MAT3( ccf, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:156:5: note: in expansion of macro 'MAT3' 156 | MAT3( cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fcf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:155:5: note: in expansion of macro 'MAT3' 155 | MAT3( fcf, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:154:5: note: in expansion of macro 'MAT3' 154 | MAT3( fc, *nx, *ny, *nz); | ^~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 5%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildBd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c: In function 'Vbuildband': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:65:5: note: in expansion of macro 'MAT2' 65 | MAT2(ac, *nx * *ny * *nz, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c: In function 'Vbuildband1_7': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:133:5: note: in expansion of macro 'MAT3' 133 | MAT3(uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:132:5: note: in expansion of macro 'MAT3' 132 | MAT3(oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:131:5: note: in expansion of macro 'MAT3' 131 | MAT3(oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:130:5: note: in expansion of macro 'MAT3' 130 | MAT3(oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_acB' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:128:5: note: in expansion of macro 'MAT2' 128 | MAT2(acB, *lda, *ny-1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c: In function 'Vbuildband1_27': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:213:5: note: in expansion of macro 'MAT3' 213 | MAT3(uSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:212:5: note: in expansion of macro 'MAT3' 212 | MAT3(uSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:211:5: note: in expansion of macro 'MAT3' 211 | MAT3(uNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:210:5: note: in expansion of macro 'MAT3' 210 | MAT3(uNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:208:5: note: in expansion of macro 'MAT3' 208 | MAT3( uS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:207:5: note: in expansion of macro 'MAT3' 207 | MAT3( uN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:206:5: note: in expansion of macro 'MAT3' 206 | MAT3( uW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:205:5: note: in expansion of macro 'MAT3' 205 | MAT3( uE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:203:5: note: in expansion of macro 'MAT3' 203 | MAT3(oNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:202:5: note: in expansion of macro 'MAT3' 202 | MAT3(oNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:200:5: note: in expansion of macro 'MAT3' 200 | MAT3( uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:199:5: note: in expansion of macro 'MAT3' 199 | MAT3( oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:198:5: note: in expansion of macro 'MAT3' 198 | MAT3( oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:197:5: note: in expansion of macro 'MAT3' 197 | MAT3( oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_acB' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:195:5: note: in expansion of macro 'MAT2' 195 | MAT2(acB, *lda, *ny-1); | ^~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 1%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vgrid.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_mg.dir/vgrid.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vgrid.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vgrid.c: In function 'Vgrid_readDXBIN': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vgrid.c:816:6: warning: variable 'isBinary' set but not used [-Wunused-but-set-variable] 816 | int isBinary = 0; | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vgrid.c:813:18: warning: unused variable 'itmp' [-Wunused-variable] 813 | size_t i, j, k, itmp, u; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vgrid.c: In function 'Vgrid_writeUHBD': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vgrid.c:1697:36: warning: variable 'hy' set but not used [-Wunused-but-set-variable] 1697 | double xmin, ymin, zmin, hzed, hy, hx; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vgrid.c:1697:30: warning: variable 'hzed' set but not used [-Wunused-but-set-variable] 1697 | double xmin, ymin, zmin, hzed, hy, hx; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vgrid.c: In function 'Vgrid_readDXBIN': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vgrid.c:853:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 853 | fgets(tok, VMAX_BUFSIZE, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 8%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vmgrid.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_mg.dir/vmgrid.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vmgrid.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vmgrid.c: In function 'Vmgrid_addGrid': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vmgrid.c:198:12: warning: unused variable 'tgrad' [-Wunused-variable] 198 | double tgrad[3]; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vmgrid.c:197:15: warning: unused variable 'rc' [-Wunused-variable] 197 | int i, j, rc; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vmgrid.c:197:12: warning: unused variable 'j' [-Wunused-variable] 197 | int i, j, rc; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vmgrid.c:197:9: warning: unused variable 'i' [-Wunused-variable] 197 | int i, j, rc; | ^ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 2%] Building C object src/generic/CMakeFiles/apbs_generic.dir/nosh.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/nosh.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c: In function 'NOsh_setupCalcGEOFLOWMANUAL': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:2683:15: warning: variable 'apolparm' set but not used [-Wunused-but-set-variable] 2683 | APOLparm *apolparm = VNULL; | ^~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:57: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:57: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:57: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:504, from /usr/include/maloc/maloc_base.h:82, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:57: In function 'strncpy', inlined from 'NOsh_parsePBAM' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:3139:3: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parsePBSAM' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:3268:3: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseAPOLAR' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:1348:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:582:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseELEC' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:1222:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:577:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_MESH' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:953:9, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:1007:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_CHARGE' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:918:5, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:1005:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_POTENTIAL' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:872:5, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:1003:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_KAPPA' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:827:5, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:1001:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_DIEL' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:772:5, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:999:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_DIEL' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:776:5, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:999:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_DIEL' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:780:5, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:999:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_PARM' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:723:13, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:997:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_PARM' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:701:13, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:997:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_MOL' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:659:9, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:995:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_MOL' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:640:9, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:995:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_MOL' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:621:9, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:995:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 9%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vopot.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_mg.dir/vopot.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vopot.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vopot.c: In function 'Vopot_curvature': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vopot.c:219:26: warning: variable 'eps_w' set but not used [-Wunused-but-set-variable] 219 | double u, T, charge, eps_w, xkappa, dist, size, val, *position, zkappa2; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vopot.c:219:18: warning: variable 'charge' set but not used [-Wunused-but-set-variable] 219 | double u, T, charge, eps_w, xkappa, dist, size, val, *position, zkappa2; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vopot.c:219:15: warning: variable 'T' set but not used [-Wunused-but-set-variable] 219 | double u, T, charge, eps_w, xkappa, dist, size, val, *position, zkappa2; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vopot.c:269:23: warning: 'val' may be used uninitialized in this function [-Wmaybe-uninitialized] 269 | u = u + val; | ~~^~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 10%] Building C object src/generic/CMakeFiles/apbs_generic.dir/mgparm.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/mgparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/mgparm.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 3%] Building C object src/CMakeFiles/apbs_routines.dir/routines.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_routines.dir/routines.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'loadDielMaps': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:296:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 296 | for (ii=0; ii<(nx*ny*nz); ii++) | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:298:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 298 | sum = sum*hx*hy*hzed; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:331:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 331 | for (ii=0; ii<(nx*ny*nz); ii++) | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:333:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 333 | sum = sum*hx*hy*hzed; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:420:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 420 | for (ii=0; ii<(nx*ny*nz); ii++) | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:422:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 422 | sum = sum*hx*hy*hzed; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:454:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 454 | for (ii=0; ii<(nx*ny*nz); ii++) | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:456:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 456 | sum = sum*hx*hy*hzed; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'initMG': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:1234:12: warning: variable 'iparm' set but not used [-Wunused-but-set-variable] 1234 | iparm, | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'energyMG': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:1584:13: warning: variable 'mgparm' set but not used [-Wunused-but-set-variable] 1584 | MGparm *mgparm; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'writematMG': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:1803:10: warning: variable 'mxtype' set but not used [-Wunused-but-set-variable] 1803 | char mxtype[3]; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'printApolForce': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:3485:12: warning: variable 'scalar' set but not used [-Wunused-but-set-variable] 3485 | scalar, | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:3484:12: warning: variable 'temp' set but not used [-Wunused-but-set-variable] 3484 | double temp, | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'initAPOL': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4496:12: warning: variable 'sav' set but not used [-Wunused-but-set-variable] 4496 | sav, /**< @todo document */ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4495:12: warning: variable 'sasa' set but not used [-Wunused-but-set-variable] 4495 | double sasa, /**< @todo document */ | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4489:12: warning: unused variable 'ts' [-Wunused-variable] 4489 | time_t ts; /**< Temporary timing variable for debugging (PCE) */ | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'forceAPOL': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4753:13: warning: unused variable 'apos' [-Wunused-variable] 4753 | *apos; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4737:46: warning: unused variable 'ts_sub' [-Wunused-variable] 4737 | time_t ts, ts_main, ts_sub; | ^~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/gemake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' neric/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'writematMG': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:1840:30: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 1840 | sprintf(outpath, "%s.%s", writematstem, "mat"); | ^~ ~~~~~ In file included from /usr/include/stdio.h:872, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'writedataFlat': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2105:33: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2105 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na * /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'writedataXML': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2363:33: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2363 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na * /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'writedataMG': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2676:30: warning: '%s' directive writing 5 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2676 | sprintf(outpath, "%s.%s", writestem, "dxbin"); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:872, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 7 and 1030 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2720:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2720 | sprintf(outpath, "%s.%s", writestem, "txt"); | ^~ ~~~~~ In file included from /usr/include/stdio.h:872, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2711:38: warning: '%s' directive writing 5 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2711 | sprintf(outpath, "%s.%s", writestem, "dx.gz"); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:872, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 7 and 1030 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2694:38: warning: '%s' directive writing 4 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2694 | sprintf(outpath, "%s.%s", writestem, "mcsf"); | ^~ ~~~~~~ In file included from /usr/include/stdio.h:872, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 6 and 1029 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2687:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2687 | sprintf(outpath, "%s.%s", writestem, "ucd"); | ^~ ~~~~~ In file included from /usr/include/stdio.h:872, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2701:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2701 | sprintf(outpath, "%s.%s", writestem, "grd"); | ^~ ~~~~~ In file included from /usr/include/stdio.h:872, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2666:38: warning: '%s' directive writing 2 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2666 | sprintf(outpath, "%s.%s", writestem, "dx"); | ^~ ~~~~ In file included from /usr/include/stdio.h:872, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 4 and 1027 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'returnEnergy': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2778:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2778 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na * /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'printEnergy': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2839:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2839 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na * /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'printElecEnergy': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2904:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2904 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na * /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'printApolEnergy': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2970:18: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2970 | gtenergy += (scalar * ((apolparm->gamma*apolparm->sasa) + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2971 | (apolparm->press*apolparm->sav) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2972 | (apolparm->wcaEnergy))); | ~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'initAPOL': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4547:30: warning: 'center[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] 4547 | disp[0] = (x - center[0]); | ~~~~~~^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4548:30: warning: 'center[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] 4548 | disp[1] = (y - center[1]); | ~~~~~~^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4549:30: warning: 'center[2]' may be used uninitialized in this function [-Wmaybe-uninitialized] 4549 | disp[2] = (z - center[2]); | ~~~~~~^~~ make[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 12%] Built target apbs_routines make[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 12%] Building C object src/generic/CMakeFiles/apbs_generic.dir/femparm.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/femparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/femparm.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 15%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbsamparm.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/pbsamparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.c: In function 'PBSAMparm_ctor2': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.c:79:9: warning: unused variable 'i' [-Wunused-variable] 79 | int i; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.c: In function 'PBSAMparm_parseMSMS': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.c:183:6: warning: unused variable 'td' [-Wunused-variable] 183 | int td; | ^~ In file included from /usr/include/string.h:504, from /usr/include/maloc/maloc_base.h:82, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:68, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.c:57: In function 'strncpy', inlined from 'PBSAMparm_parseSurf' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.c:174:8: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBSAMparm_parseImat' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.c:211:8: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBSAMparm_parseExp' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.c:226:8: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 14%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbamparm.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/pbamparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c: In function 'PBAMparm_parseRandorient': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c:305:17: warning: unused variable 'name' [-Wunused-variable] 305 | const char* name = "randorient"; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c: In function 'PBAMparm_parse3Dmap': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c:373:10: warning: unused variable 'tok' [-Wunused-variable] 373 | char tok[VMAX_BUFSIZE]; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c:372:17: warning: unused variable 'name' [-Wunused-variable] 372 | const char* name = "3dmap"; | ^~~~ In file included from /usr/include/string.h:504, from /usr/include/maloc/maloc_base.h:82, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:68, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c:57: In function 'strncpy', inlined from 'PBAMparm_parseRunType' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c:282:7: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBAMparm_parseRunName' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c:297:7: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBAMparm_parseUnits' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c:344:7: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBAMparm_parseTermcombine' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c:452:7: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBAMparm_parseGrid2D' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c:400:7: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBAMparm_parseGrid2D' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c:408:7: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBAMparm_parseXYZ' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c:656:8: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBAMparm_parseDiff' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c:500:8: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBAMparm_parseTerm' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c:563:9: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBAMparm_parseTerm' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c:573:11: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 17%] Building C object src/generic/CMakeFiles/apbs_generic.dir/bemparm.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/bemparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/bemparm.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/bemparm.c: In function 'BEMparm_ctor2': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/bemparm.c:79:9: warning: unused variable 'i' [-Wunused-variable] 79 | int i; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/bemparm.c: In function 'BEMparm_check': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/bemparm.c:127:36: warning: unused variable 'nlev' [-Wunused-variable] 127 | int i, tdime[3], ti, tnlev[3], nlev; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/bemparm.c:127:26: warning: unused variable 'tnlev' [-Wunused-variable] 127 | int i, tdime[3], ti, tnlev[3], nlev; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/bemparm.c:127:22: warning: unused variable 'ti' [-Wunused-variable] 127 | int i, tdime[3], ti, tnlev[3], nlev; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/bemparm.c:127:12: warning: unused variable 'tdime' [-Wunused-variable] 127 | int i, tdime[3], ti, tnlev[3], nlev; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/bemparm.c:127:9: warning: unused variable 'i' [-Wunused-variable] 127 | int i, tdime[3], ti, tnlev[3], nlev; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/bemparm.c: In function 'BEMparm_copy': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/bemparm.c:176:9: warning: unused variable 'i' [-Wunused-variable] 176 | int i; | ^ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 18%] Building C object src/generic/CMakeFiles/apbs_generic.dir/geoflowparm.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/geoflowparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.c: In function 'GEOFLOWparm_ctor2': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.c:79:9: warning: unused variable 'i' [-Wunused-variable] 79 | int i; | ^ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 16%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/pbeparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbeparm.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' In file included from /usr/include/string.h:504, from /usr/include/maloc/maloc_base.h:82, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbeparm.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbeparm.c:57: In function 'strncpy', inlined from 'PBEparm_parseWRITE' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbeparm.c:1163:9: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBEparm_parseWRITEMAT' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbeparm.c:1204:5: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 20%] Building C object src/generic/CMakeFiles/apbs_generic.dir/apolparm.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/apolparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/apolparm.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 22%] Building C object src/generic/CMakeFiles/apbs_generic.dir/valist.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/valist.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/valist.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/python/CMakeFiles/apbslib_swig_compilation.dir/build.make tools/python/CMakeFiles/apbslib_swig_compilation.dir/depend /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/valist.c: In function 'Valist_readPQR': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/valist.c:618:10: warning: unused variable 'chs' [-Wunused-variable] 618 | char chs[VMAX_BUFSIZE]; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/valist.c: In function 'Valist_readXML': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/valist.c:834:17: warning: 'radius' may be used uninitialized in this function [-Wmaybe-uninitialized] 834 | Vatom_setRadius(nextAtom, radius); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/valist.c:833:17: warning: 'charge' may be used uninitialized in this function [-Wmaybe-uninitialized] 833 | Vatom_setCharge(nextAtom, charge); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/valist.c:831:48: warning: 'z' may be used uninitialized in this function [-Wmaybe-uninitialized] 831 | pos[0] = x; pos[1] = y; pos[2] = z; | ~~~~~~~^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/valist.c:831:36: warning: 'y' may be used uninitialized in this function [-Wmaybe-uninitialized] 831 | pos[0] = x; pos[1] = y; pos[2] = z; | ~~~~~~~^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/valist.c:831:24: warning: 'x' may be used uninitialized in this function [-Wmaybe-uninitialized] 831 | pos[0] = x; pos[1] = y; pos[2] = z; | ~~~~~~~^~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python/CMakeFiles/apbslib_swig_compilation.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python/CMakeFiles/apbslib_swig_compilation.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python/CMakeFiles/apbslib_swig_compilation.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python/CMakeFiles/apbslib_swig_compilation.dir/depend.internal". Scanning dependencies of target apbslib_swig_compilation make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/python/CMakeFiles/apbslib_swig_compilation.dir/build.make tools/python/CMakeFiles/apbslib_swig_compilation.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 21%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vacc.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vacc.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c: In function 'VaccSurf_dtor': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c:841:11: warning: variable 'mem' set but not used [-Wunused-but-set-variable] 841 | Vmem *mem; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c: In function 'Vacc_splineAccGradAtomNorm3': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c:1104:27: warning: variable 'e5' set but not used [-Wunused-but-set-variable] 1104 | double e, e2, e3, e4, e5; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c: In function 'Vacc_atomdSASA': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c:1338:12: warning: variable 'ts' set but not used [-Wunused-but-set-variable] 1338 | time_t ts; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c:1335:15: warning: variable 'ref' set but not used [-Wunused-but-set-variable] 1335 | VaccSurf *ref; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c: In function 'Vacc_totalAtomdSASA': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c:1395:15: warning: variable 'ref' set but not used [-Wunused-but-set-variable] 1395 | VaccSurf *ref; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c:1392:23: warning: variable 'tRad' set but not used [-Wunused-but-set-variable] 1392 | double *temp_Pos, tRad; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c:1391:9: warning: variable 'iatom' set but not used [-Wunused-but-set-variable] 1391 | int iatom; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c: In function 'Vacc_totalAtomdSAV': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c:1454:15: warning: variable 'ref' set but not used [-Wunused-but-set-variable] 1454 | VaccSurf *ref; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c:1451:23: warning: variable 'tRad' set but not used [-Wunused-but-set-variable] 1451 | double *temp_Pos, tRad; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c:1450:9: warning: variable 'iatom' set but not used [-Wunused-but-set-variable] 1450 | int iatom; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c: In function 'Vacc_wcaEnergyAtom': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c:1584:9: warning: variable 'npts' set but not used [-Wunused-but-set-variable] 1584 | int npts[3]; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c: In function 'Vacc_wcaForceAtom': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c:1807:12: warning: variable 'ts' set but not used [-Wunused-but-set-variable] 1807 | time_t ts; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c:1764:9: warning: variable 'npts' set but not used [-Wunused-but-set-variable] 1764 | npts[3], | ^~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 24%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vatom.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vatom.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vatom.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 23%] Swig compile apbslib.i for python cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python && /usr/bin/cmake -E make_directory /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python/CMakeFiles/_apbslib.dir cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python && /usr/bin/cmake -E touch /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON.stamp cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python && /usr/bin/cmake -E env SWIG_LIB=/usr/share/swig/4.0.0 /usr/bin/swig -python -outdir /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python -interface _apbslib -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -I/usr/include/python3.9 -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python -o /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python/apbslib.i make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 25%] Built target apbslib_swig_compilation make[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 25%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vpbe.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vpbe.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vpbe.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 27%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vcap.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vcap.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vcap.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 29%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vstring.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vstring.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vstring.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 28%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vclist.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vclist.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vclist.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 31%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vgreen.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vgreen.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c: In function 'Vgreen_coulomb_direct': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:229:31: warning: unused variable 'fz' [-Wunused-variable] 229 | double *q, qtemp, fx, fy, fz; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:229:27: warning: unused variable 'fy' [-Wunused-variable] 229 | double *q, qtemp, fx, fy, fz; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:229:23: warning: unused variable 'fx' [-Wunused-variable] 229 | double *q, qtemp, fx, fy, fz; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:229:16: warning: unused variable 'qtemp' [-Wunused-variable] 229 | double *q, qtemp, fx, fy, fz; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:229:13: warning: unused variable 'q' [-Wunused-variable] 229 | double *q, qtemp, fx, fy, fz; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c: In function 'Vgreen_coulomb': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:264:9: warning: unused variable 'iatom' [-Wunused-variable] 264 | int iatom, ipos; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:263:31: warning: unused variable 'fz' [-Wunused-variable] 263 | double *q, qtemp, fx, fy, fz; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:263:27: warning: unused variable 'fy' [-Wunused-variable] 263 | double *q, qtemp, fx, fy, fz; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:263:23: warning: unused variable 'fx' [-Wunused-variable] 263 | double *q, qtemp, fx, fy, fz; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:263:16: warning: unused variable 'qtemp' [-Wunused-variable] 263 | double *q, qtemp, fx, fy, fz; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:263:13: warning: unused variable 'q' [-Wunused-variable] 263 | double *q, qtemp, fx, fy, fz; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:262:45: warning: unused variable 'scale' [-Wunused-variable] 262 | double *apos, charge, dist, dx, dy, dz, scale; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:262:41: warning: unused variable 'dz' [-Wunused-variable] 262 | double *apos, charge, dist, dx, dy, dz, scale; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:262:37: warning: unused variable 'dy' [-Wunused-variable] 262 | double *apos, charge, dist, dx, dy, dz, scale; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:262:33: warning: unused variable 'dx' [-Wunused-variable] 262 | double *apos, charge, dist, dx, dy, dz, scale; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:262:27: warning: unused variable 'dist' [-Wunused-variable] 262 | double *apos, charge, dist, dx, dy, dz, scale; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:262:19: warning: unused variable 'charge' [-Wunused-variable] 262 | double *apos, charge, dist, dx, dy, dz, scale; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:262:13: warning: unused variable 'apos' [-Wunused-variable] 262 | double *apos, charge, dist, dx, dy, dz, scale; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:261:12: warning: unused variable 'atom' [-Wunused-variable] 261 | Vatom *atom; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c: In function 'Vgreen_coulombD_direct': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:316:16: warning: unused variable 'qtemp' [-Wunused-variable] 316 | double *q, qtemp; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:316:13: warning: unused variable 'q' [-Wunused-variable] 316 | double *q, qtemp; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c: In function 'Vgreen_coulombD': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:368:9: warning: unused variable 'iatom' [-Wunused-variable] 368 | int iatom, ipos; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:367:16: warning: unused variable 'qtemp' [-Wunused-variable] 367 | double *q, qtemp; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:367:13: warning: unused variable 'q' [-Wunused-variable] 367 | double *q, qtemp; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:366:60: warning: unused variable 'scale' [-Wunused-variable] 366 | double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:366:56: warning: unused variable 'dx' [-Wunused-variable] 366 | double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:366:52: warning: unused variable 'dz' [-Wunused-variable] 366 | double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:366:48: warning: unused variable 'dy' [-Wunused-variable] 366 | double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:366:40: warning: unused variable 'idist3' [-Wunused-variable] 366 | double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:366:33: warning: unused variable 'dist2' [-Wunused-variable] 366 | double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:366:27: warning: unused variable 'dist' [-Wunused-variable] 366 | double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:366:19: warning: unused variable 'charge' [-Wunused-variable] 366 | double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:366:13: warning: unused variable 'apos' [-Wunused-variable] 366 | double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:365:12: warning: unused variable 'atom' [-Wunused-variable] 365 | Vatom *atom; | ^~~~ At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:525:14: warning: 'treecalc' defined but not used [-Wunused-function] 525 | VPRIVATE int treecalc(Vgreen *thee, double *xtar, double *ytar, double *ztar, | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:505:14: warning: 'treecleanup' defined but not used [-Wunused-function] 505 | VPRIVATE int treecleanup(Vgreen *thee) { | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:425:14: warning: 'treesetup' defined but not used [-Wunused-function] 425 | VPRIVATE int treesetup(Vgreen *thee) { | ^~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 30%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vparam.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vparam.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vparam.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vparam.c: In function 'Vparam_readXMLFile': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vparam.c:389:69: warning: 'nalloc' may be used uninitialized in this function [-Wmaybe-uninitialized] 389 | tatoms = (Vparam_AtomData*)Vmem_malloc(thee->vmem, 2*nalloc, sizeof(Vparam_AtomData)); | ~^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vparam.c:309:18: warning: 'natoms' may be used uninitialized in this function [-Wmaybe-uninitialized] 309 | int i, ires, natoms, nalloc, ralloc; | ^~~~~~ make[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 32%] Built target apbs_generic make[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 34%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/cgd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/cgd.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/cgd.c: In function 'Vcghs': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/cgd.c:99:24: warning: 'rhok1' may be used uninitialized in this function [-Wmaybe-uninitialized] 99 | beta = rhok2 / rhok1; | ~~~~~~^~~~~~~ /usr/bin/make -f contrib/iapbs/src/CMakeFiles/iapbs.dir/build.make contrib/iapbs/src/CMakeFiles/iapbs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/CMakeFiles/iapbs.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/CMakeFiles/iapbs.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/CMakeFiles/iapbs.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/CMakeFiles/iapbs.dir/depend.internal". Scanning dependencies of target iapbs make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f contrib/iapbs/src/CMakeFiles/iapbs.dir/build.make contrib/iapbs/src/CMakeFiles/iapbs.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 11%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmg.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_mg.dir/vpmg.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'Vpmg_ctor2': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:157:61: warning: variable 'zkappa2' set but not used [-Wunused-but-set-variable] 157 | double ionConc[MAXION], ionQ[MAXION], ionRadii[MAXION], zkappa2, zks2; | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'Vpmg_qmEnergySMPBE': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:1503:12: warning: variable 'zks2' set but not used [-Wunused-but-set-variable] 1503 | zks2; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'Vpmg_qfEnergyPoint': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:1712:13: warning: variable 'pvec' set but not used [-Wunused-but-set-variable] 1712 | double *pvec; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:1709:24: warning: variable 'zmax' set but not used [-Wunused-but-set-variable] 1709 | double xmax, ymax, zmax, xmin, ymin, zmin, hx, hy, hzed, ifloat, jfloat; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:1709:18: warning: variable 'ymax' set but not used [-Wunused-but-set-variable] 1709 | double xmax, ymax, zmax, xmin, ymin, zmin, hx, hy, hzed, ifloat, jfloat; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:1709:12: warning: variable 'xmax' set but not used [-Wunused-but-set-variable] 1709 | double xmax, ymax, zmax, xmin, ymin, zmin, hx, hy, hzed, ifloat, jfloat; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'Vpmg_qfAtomEnergy': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:1794:36: warning: variable 'zmax' set but not used [-Wunused-but-set-variable] 1794 | double xmax, xmin, ymax, ymin, zmax, zmin, hx, hy, hzed, ifloat, jfloat; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:1794:24: warning: variable 'ymax' set but not used [-Wunused-but-set-variable] 1794 | double xmax, xmin, ymax, ymin, zmax, zmin, hx, hy, hzed, ifloat, jfloat; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:1794:12: warning: variable 'xmax' set but not used [-Wunused-but-set-variable] 1794 | double xmax, xmin, ymax, ymin, zmax, zmin, hx, hy, hzed, ifloat, jfloat; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'focusFillBound': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:1953:12: warning: variable 'charge' set but not used [-Wunused-but-set-variable] 1953 | charge, | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:1952:13: warning: variable 'apos' set but not used [-Wunused-but-set-variable] 1952 | *apos, | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:1951:12: warning: variable 'size' set but not used [-Wunused-but-set-variable] 1951 | size, | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:1950:12: warning: variable 'xkappa' set but not used [-Wunused-but-set-variable] 1950 | xkappa, | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'bcfl2': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:2668:40: warning: variable 'qzy' set but not used [-Wunused-but-set-variable] 2668 | double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:2668:36: warning: variable 'qzx' set but not used [-Wunused-but-set-variable] 2668 | double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:2668:24: warning: variable 'qyx' set but not used [-Wunused-but-set-variable] 2668 | double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'bcCalcOrig': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:2832:34: warning: unused variable 'debye' [-Wunused-variable] 2832 | double *dipole, *quadrupole, debye, eps_p; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:2832:22: warning: variable 'quadrupole' set but not used [-Wunused-but-set-variable] 2832 | double *dipole, *quadrupole, debye, eps_p; | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:2832:13: warning: variable 'dipole' set but not used [-Wunused-but-set-variable] 2832 | double *dipole, *quadrupole, debye, eps_p; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'bcflnew': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3415:31: warning: variable 'eps_p' set but not used [-Wunused-but-set-variable] 3415 | double dist, pre1, eps_w, eps_p, T, xkappa; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3410:29: warning: unused variable 'z1' [-Wunused-variable] 3410 | int x0, x1, y0, y1, z0, z1; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3410:25: warning: unused variable 'z0' [-Wunused-variable] 3410 | int x0, x1, y0, y1, z0, z1; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3410:21: warning: unused variable 'y1' [-Wunused-variable] 3410 | int x0, x1, y0, y1, z0, z1; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3410:17: warning: unused variable 'y0' [-Wunused-variable] 3410 | int x0, x1, y0, y1, z0, z1; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3410:13: warning: unused variable 'x1' [-Wunused-variable] 3410 | int x0, x1, y0, y1, z0, z1; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3410:9: warning: unused variable 'x0' [-Wunused-variable] 3410 | int x0, x1, y0, y1, z0, z1; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3409:13: warning: unused variable 'k' [-Wunused-variable] 3409 | int i,j,k, iatom, igrid; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3409:11: warning: unused variable 'j' [-Wunused-variable] 3409 | int i,j,k, iatom, igrid; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3409:9: warning: unused variable 'i' [-Wunused-variable] 3409 | int i,j,k, iatom, igrid; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'multipolebc': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3492:19: warning: variable 'kr3' set but not used [-Wunused-but-set-variable] 3492 | double kr,kr2,kr3; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'bcfl_sdh': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3608:40: warning: variable 'qzy' set but not used [-Wunused-but-set-variable] 3608 | double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3608:36: warning: variable 'qzx' set but not used [-Wunused-but-set-variable] 3608 | double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3608:24: warning: variable 'qyx' set but not used [-Wunused-but-set-variable] 3608 | double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3604:22: warning: unused variable 'quadrupole' [-Wunused-variable] 3604 | double *dipole, *quadrupole; | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3604:13: warning: unused variable 'dipole' [-Wunused-variable] 3604 | double *dipole, *quadrupole; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'bcfl_mdh': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3875:41: warning: variable 'eps_p' set but not used [-Wunused-but-set-variable] 3875 | double size, charge, xkappa, eps_w, eps_p, T, pre1, dist; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3874:22: warning: unused variable 'quadrupole' [-Wunused-variable] 3874 | double *dipole, *quadrupole; | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3874:13: warning: unused variable 'dipole' [-Wunused-variable] 3874 | double *dipole, *quadrupole; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'bcfl_mem': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:4008:24: warning: unused variable 'edge_L' [-Wunused-variable] 4008 | double A, B, C, D, edge_L, l; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:4007:38: warning: unused variable 'z_shift' [-Wunused-variable] 4007 | double dist, val, z_low, z_high, z_shift; | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:4007:12: warning: unused variable 'dist' [-Wunused-variable] 4007 | double dist, val, z_low, z_high, z_shift; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'bcfl_map': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:4177:38: warning: variable 'hzed' set but not used [-Wunused-but-set-variable] 4177 | double position[3], pot, hx, hy, hzed; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:4177:34: warning: variable 'hy' set but not used [-Wunused-but-set-variable] 4177 | double position[3], pot, hx, hy, hzed; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:4177:30: warning: variable 'hx' set but not used [-Wunused-but-set-variable] 4177 | double position[3], pot, hx, hy, hzed; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:4176:11: warning: unused variable 'pbe' [-Wunused-variable] 4176 | Vpbe *pbe; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'fillcoCoefMap': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:4492:46: warning: unused variable 'pot' [-Wunused-variable] 4492 | double ionstr, position[3], tkappa, eps, pot, hx, hy, hzed; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'fillcoCoefMolIon': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:4638:16: warning: variable 'surfMeth' set but not used [-Wunused-but-set-variable] 4638 | Vsurf_Meth surfMeth; | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:4630:11: warning: variable 'acc' set but not used [-Wunused-but-set-variable] 4630 | Vacc *acc; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'fillcoCoefMolDielNoSmooth': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:4746:30: warning: unused variable 'deps' [-Wunused-variable] 4746 | double srad, epsw, epsp, deps, area; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'fillcoCoefSpline': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:5031:47: warning: variable 'rtot2' set but not used [-Wunused-but-set-variable] 5031 | double dx2, dy2, dz2, stot2, itot2, rtot, rtot2, splineWin, w3i; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'fillcoCharge': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:5289:15: warning: unused variable 'rc' [-Wunused-variable] 5289 | Vrc_Codes rc; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'fillcoChargeMap': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:5346:49: warning: variable 'hzed' set but not used [-Wunused-but-set-variable] 5346 | double position[3], charge, zmagic, hx, hy, hzed; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:5346:45: warning: variable 'hy' set but not used [-Wunused-but-set-variable] 5346 | double position[3], charge, zmagic, hx, hy, hzed; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:5346:41: warning: variable 'hx' set but not used [-Wunused-but-set-variable] 5346 | double position[3], charge, zmagic, hx, hy, hzed; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'Vpmg_force': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:5829:12: warning: unused variable 'npF' [-Wunused-variable] 5829 | double npF[3]; /* Non-polar boundary force */ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'Vpmg_ibForce': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:5854:24: warning: variable 'zlen' set but not used [-Wunused-but-set-variable] 5854 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:5854:18: warning: variable 'ylen' set but not used [-Wunused-but-set-variable] 5854 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:5854:12: warning: variable 'xlen' set but not used [-Wunused-but-set-variable] 5854 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:5848:13: warning: variable 'alist' set but not used [-Wunused-but-set-variable] 5848 | Valist *alist; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'Vpmg_dbForce': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6019:55: warning: variable 'kT' set but not used [-Wunused-but-set-variable] 6019 | double rtot, dx, gpos[3], tgrad[3], dbFmag, epsw, kT; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6019:18: warning: variable 'dx' set but not used [-Wunused-but-set-variable] 6019 | double rtot, dx, gpos[3], tgrad[3], dbFmag, epsw, kT; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6018:66: warning: variable 'rtot2' set but not used [-Wunused-but-set-variable] 6018 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2, epsp; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6018:24: warning: variable 'zlen' set but not used [-Wunused-but-set-variable] 6018 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2, epsp; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6018:18: warning: variable 'ylen' set but not used [-Wunused-but-set-variable] 6018 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2, epsp; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6018:12: warning: variable 'xlen' set but not used [-Wunused-but-set-variable] 6018 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2, epsp; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'qfForceSpline2': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6453:24: warning: variable 'zlen' set but not used [-Wunused-but-set-variable] 6453 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6453:18: warning: variable 'ylen' set but not used [-Wunused-but-set-variable] 6453 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6453:12: warning: variable 'xlen' set but not used [-Wunused-but-set-variable] 6453 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'qfForceSpline4': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6576:15: warning: unused variable 'k' [-Wunused-variable] 6576 | int i, j, k, ii, jj, kk; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6576:12: warning: unused variable 'j' [-Wunused-variable] 6576 | int i, j, k, ii, jj, kk; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6568:24: warning: variable 'zlen' set but not used [-Wunused-but-set-variable] 6568 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6568:18: warning: variable 'ylen' set but not used [-Wunused-but-set-variable] 6568 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6568:12: warning: variable 'xlen' set but not used [-Wunused-but-set-variable] 6568 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'markFrac': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6692:39: warning: variable 'a000' set but not used [-Wunused-but-set-variable] 6692 | double dx, dx2, dy, dy2, dz, dz2, a000, a001, a010, a100, r2; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'zlapSolve': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6912:12: warning: unused variable 'norm' [-Wunused-variable] 6912 | double norm, coef, proj, eigx, eigy, eigz; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'Vpmg_solveLaplace': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7044:35: warning: variable 'n' set but not used [-Wunused-but-set-variable] 7044 | int i, j, k, ijk, nx, ny, nz, n, dilo, dihi, djlo, djhi, dklo, dkhi; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7044:18: warning: unused variable 'ijk' [-Wunused-variable] 7044 | int i, j, k, ijk, nx, ny, nz, n, dilo, dihi, djlo, djhi, dklo, dkhi; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'fillcoPermanentMultipole': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7263:58: warning: unused variable 'mqzz' [-Wunused-variable] 7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7263:53: warning: unused variable 'mqzy' [-Wunused-variable] 7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7263:48: warning: unused variable 'mqzx' [-Wunused-variable] 7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7263:43: warning: unused variable 'mqyy' [-Wunused-variable] 7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7263:38: warning: unused variable 'mqyx' [-Wunused-variable] 7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7263:33: warning: unused variable 'mqxx' [-Wunused-variable] 7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7263:29: warning: unused variable 'muz' [-Wunused-variable] 7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7263:25: warning: unused variable 'muy' [-Wunused-variable] 7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7263:21: warning: unused variable 'mux' [-Wunused-variable] 7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7263:18: warning: unused variable 'mc' [-Wunused-variable] 7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7263:12: warning: unused variable 'debye' [-Wunused-variable] 7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7262:24: warning: unused variable 'mr2' [-Wunused-variable] 7262 | double mir,mjr,mkr,mr2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7262:20: warning: unused variable 'mkr' [-Wunused-variable] 7262 | double mir,mjr,mkr,mr2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7262:16: warning: unused variable 'mjr' [-Wunused-variable] 7262 | double mir,mjr,mkr,mr2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7262:12: warning: unused variable 'mir' [-Wunused-variable] 7262 | double mir,mjr,mkr,mr2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7258:9: warning: unused variable 'i' [-Wunused-variable] 7258 | int i, ii, jj, kk, nx, ny, nz, iatom; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7253:47: warning: unused variable 'qave' [-Wunused-variable] 7253 | double c,ux,uy,uz,qxx,qyx,qyy,qzx,qzy,qzz,qave; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7252:29: warning: unused variable 'quad' [-Wunused-variable] 7252 | double charge, *dipole,*quad; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7252:21: warning: unused variable 'dipole' [-Wunused-variable] 7252 | double charge, *dipole,*quad; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'fillcoCoefSpline4': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:9948:47: warning: variable 'rtot2' set but not used [-Wunused-but-set-variable] 9948 | double dx2, dy2, dz2, stot2, itot2, rtot, rtot2, splineWin; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:9946:42: warning: unused variable 'w2i' [-Wunused-variable] 9946 | double irad, dx, dy, dz, epsw, epsp, w2i; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'fillcoPermanentInduced': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10278:9: warning: unused variable 'i' [-Wunused-variable] 10278 | int i, ii, jj, kk, nx, ny, nz, iatom; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10273:47: warning: unused variable 'qave' [-Wunused-variable] 10273 | double c,ux,uy,uz,qxx,qyx,qyy,qzx,qzy,qzz,qave; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10272:29: warning: unused variable 'quad' [-Wunused-variable] 10272 | double charge, *dipole,*quad; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10272:21: warning: unused variable 'dipole' [-Wunused-variable] 10272 | double charge, *dipole,*quad; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'fillcoCoefSpline3': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10441:27: warning: variable 'e5' set but not used [-Wunused-but-set-variable] 10441 | double e, e2, e3, e4, e5; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10439:47: warning: variable 'rtot2' set but not used [-Wunused-but-set-variable] 10439 | double dx2, dy2, dz2, stot2, itot2, rtot, rtot2, splineWin; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10437:42: warning: unused variable 'w2i' [-Wunused-variable] 10437 | double irad, dx, dy, dz, epsw, epsp, w2i; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'bcolcomp': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10746:55: warning: variable 'mxlv' set but not used [-Wunused-but-set-variable] 10746 | int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10746:47: warning: unused variable 'maxlev' [-Wunused-variable] 10746 | int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10746:39: warning: unused variable 'ierror' [-Wunused-variable] 10746 | int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10746:15: warning: variable 'niwk' set but not used [-Wunused-but-set-variable] 10746 | int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10746:9: warning: variable 'nrwk' set but not used [-Wunused-but-set-variable] 10746 | int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10743:29: warning: unused variable 'i' [-Wunused-variable] 10743 | int nrow, ncol, nnzero, i; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10743:21: warning: unused variable 'nnzero' [-Wunused-variable] 10743 | int nrow, ncol, nnzero, i; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10743:15: warning: unused variable 'ncol' [-Wunused-variable] 10743 | int nrow, ncol, nnzero, i; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10743:9: warning: unused variable 'nrow' [-Wunused-variable] 10743 | int nrow, ncol, nnzero, i; | ^~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:73: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'bcolcomp2': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10804:5: note: in expansion of macro 'MAT2' 10804 | MAT2(iz, 50, nlev); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'bcolcomp3': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10836:5: note: in expansion of macro 'MAT2' 10836 | MAT2(ac, *nx * *ny * *nz, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'bcolcomp4': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10874:5: note: in expansion of macro 'MAT3' 10874 | MAT3(oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10873:5: note: in expansion of macro 'MAT3' 10873 | MAT3(cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10872:5: note: in expansion of macro 'MAT3' 10872 | MAT3(uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10871:5: note: in expansion of macro 'MAT3' 10871 | MAT3(oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10870:5: note: in expansion of macro 'MAT3' 10870 | MAT3(oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10866:27: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] 10866 | int inonz, iirow, nn, nrow, ncol, nonz, irow, n; | ^~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:73: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7229:16: warning: 'd3bspline4' defined but not used [-Wunused-function] 7229 | VPUBLIC double d3bspline4(double x) { | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6684:15: warning: 'markFrac' defined but not used [-Wunused-function] 6684 | VPRIVATE void markFrac( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3868:15: warning: 'bcfl_mdh' defined but not used [-Wunused-function] 3868 | VPRIVATE void bcfl_mdh(Vpmg *thee){ | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:2828:15: warning: 'bcCalcOrig' defined but not used [-Wunused-function] 2828 | VPRIVATE void bcCalcOrig(Vpmg *thee) { | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:2547:17: warning: 'bcfl1sp' defined but not used [-Wunused-function] 2547 | VPRIVATE double bcfl1sp(double size, double *apos, double charge, | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:1148:17: warning: 'Vpmg_polarizEnergy' defined but not used [-Wunused-function] 1148 | VPRIVATE double Vpmg_polarizEnergy(Vpmg *thee, | ^~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 36%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmgp.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_mg.dir/vpmgp.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmgp.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmgp.c: In function 'Vpmgp_size': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmgp.c:204:87: warning: unused variable 'iretot' [-Wunused-variable] 204 | int nxf, nyf, nzf, level, num_nf_oper, num_narrc_oper, n_band, nc_band, num_band, iretot; | ^~~~~~ make[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 36%] Built target apbs_mg make[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 35%] Building C object contrib/iapbs/src/CMakeFiles/iapbs.dir/apbs_driver.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/. -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/iapbs.dir/apbs_driver.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c: In function 'apbsdrv_': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:278:5: warning: multi-line comment [-Wcomment] 278 | // Vnm_print(1,"\nError you must provide a parameter file if you\n" \ | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:110:21: warning: unused variable 'isolve' [-Wunused-variable] 110 | int rank, size, isolve, debug, natom; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:98:11: warning: unused variable 'gm' [-Wunused-variable] 98 | void *gm[NOSH_MAXMOL]; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:97:11: warning: variable 'fetk' set but not used [-Wunused-but-set-variable] 97 | void *fetk[NOSH_MAXCALC]; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:85:14: warning: unused variable 'feparm' [-Wunused-variable] 85 | FEMparm *feparm = VNULL; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c: In function 'setupString': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:938:64: warning: implicit declaration of function 'getpid' [-Wimplicit-function-declaration] 938 | sprintf(string, "%swrite pot dx iapbs-pot-%d\n", string, getpid()); | ^~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:11: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:11: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:11: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:11: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c: In function 'getElecEnergy': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:1055:22: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 1055 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na * /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c: In function 'apbsdrv_': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:549:42: warning: 'outputformat' may be used uninitialized in this function [-Wmaybe-uninitialized] 549 | if ((pbeparm->calcenergy == PCE_COMPS) && (outputformat != OUTPUT_NULL)){ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 38%] Linking C static library ../../../lib/libiapbs.a cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src && /usr/bin/cmake -P CMakeFiles/iapbs.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/iapbs.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libiapbs.a CMakeFiles/iapbs.dir/apbs_driver.c.o /usr/bin/ranlib ../../../lib/libiapbs.a make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 32%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildPd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildPd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.h:58, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c: In function 'VbuildP': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:67:5: note: in expansion of macro 'MAT2' 67 | MAT2(ac, *nxf * *nyf * *nzf, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:66:5: note: in expansion of macro 'MAT2' 66 | MAT2(pc, *nxc * *nyc * *nzc, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c: In function 'VbuildP_trilin': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:101:5: note: in expansion of macro 'MAT2' 101 | MAT2(pc, *nxc * *nyc * *nzc, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c: In function 'VbuildPb_trilin': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:163:5: note: in expansion of macro 'MAT3' 163 | MAT3(dPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:162:5: note: in expansion of macro 'MAT3' 162 | MAT3(dPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:161:5: note: in expansion of macro 'MAT3' 161 | MAT3(dPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:160:5: note: in expansion of macro 'MAT3' 160 | MAT3(dPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:158:5: note: in expansion of macro 'MAT3' 158 | MAT3( dPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:157:5: note: in expansion of macro 'MAT3' 157 | MAT3( dPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:156:5: note: in expansion of macro 'MAT3' 156 | MAT3( dPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:155:5: note: in expansion of macro 'MAT3' 155 | MAT3( dPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:154:5: note: in expansion of macro 'MAT3' 154 | MAT3( dPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:152:5: note: in expansion of macro 'MAT3' 152 | MAT3(uPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:151:5: note: in expansion of macro 'MAT3' 151 | MAT3(uPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:150:5: note: in expansion of macro 'MAT3' 150 | MAT3(uPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:149:5: note: in expansion of macro 'MAT3' 149 | MAT3(uPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:147:5: note: in expansion of macro 'MAT3' 147 | MAT3( uPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:146:5: note: in expansion of macro 'MAT3' 146 | MAT3( uPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:145:5: note: in expansion of macro 'MAT3' 145 | MAT3( uPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:144:5: note: in expansion of macro 'MAT3' 144 | MAT3( uPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:143:5: note: in expansion of macro 'MAT3' 143 | MAT3( uPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:141:5: note: in expansion of macro 'MAT3' 141 | MAT3(oPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:140:5: note: in expansion of macro 'MAT3' 140 | MAT3(oPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:139:5: note: in expansion of macro 'MAT3' 139 | MAT3(oPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:138:5: note: in expansion of macro 'MAT3' 138 | MAT3(oPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:136:5: note: in expansion of macro 'MAT3' 136 | MAT3( oPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:135:5: note: in expansion of macro 'MAT3' 135 | MAT3( oPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:134:5: note: in expansion of macro 'MAT3' 134 | MAT3( oPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:133:5: note: in expansion of macro 'MAT3' 133 | MAT3( oPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:132:5: note: in expansion of macro 'MAT3' 132 | MAT3( oPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c: In function 'VbuildP_op7': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:212:5: note: in expansion of macro 'MAT2' 212 | MAT2(pc, *nxc * *nyc * *nzc, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:211:5: note: in expansion of macro 'MAT2' 211 | MAT2(ac, *nxf * *nyf * *nzf, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c: In function 'VbuildPb_op7': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:287:5: note: in expansion of macro 'MAT3' 287 | MAT3(dPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:286:5: note: in expansion of macro 'MAT3' 286 | MAT3(dPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:285:5: note: in expansion of macro 'MAT3' 285 | MAT3(dPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:284:5: note: in expansion of macro 'MAT3' 284 | MAT3(dPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:283:5: note: in expansion of macro 'MAT3' 283 | MAT3( dPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:282:5: note: in expansion of macro 'MAT3' 282 | MAT3( dPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:281:5: note: in expansion of macro 'MAT3' 281 | MAT3( dPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:280:5: note: in expansion of macro 'MAT3' 280 | MAT3( dPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:279:5: note: in expansion of macro 'MAT3' 279 | MAT3( dPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:278:5: note: in expansion of macro 'MAT3' 278 | MAT3(uPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:277:5: note: in expansion of macro 'MAT3' 277 | MAT3(uPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:276:5: note: in expansion of macro 'MAT3' 276 | MAT3(uPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:275:5: note: in expansion of macro 'MAT3' 275 | MAT3(uPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:274:5: note: in expansion of macro 'MAT3' 274 | MAT3( uPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:273:5: note: in expansion of macro 'MAT3' 273 | MAT3( uPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:272:5: note: in expansion of macro 'MAT3' 272 | MAT3( uPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:271:5: note: in expansion of macro 'MAT3' 271 | MAT3( uPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:270:5: note: in expansion of macro 'MAT3' 270 | MAT3( uPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:269:5: note: in expansion of macro 'MAT3' 269 | MAT3(oPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:268:5: note: in expansion of macro 'MAT3' 268 | MAT3(oPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:267:5: note: in expansion of macro 'MAT3' 267 | MAT3(oPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:266:5: note: in expansion of macro 'MAT3' 266 | MAT3(oPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:265:5: note: in expansion of macro 'MAT3' 265 | MAT3( oPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:264:5: note: in expansion of macro 'MAT3' 264 | MAT3( oPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:263:5: note: in expansion of macro 'MAT3' 263 | MAT3( oPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:262:5: note: in expansion of macro 'MAT3' 262 | MAT3( oPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:261:5: note: in expansion of macro 'MAT3' 261 | MAT3( oPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:260:5: note: in expansion of macro 'MAT3' 260 | MAT3( uC, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:259:5: note: in expansion of macro 'MAT3' 259 | MAT3( oN, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:258:5: note: in expansion of macro 'MAT3' 258 | MAT3( oE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:257:5: note: in expansion of macro 'MAT3' 257 | MAT3( oC, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:255:32: warning: variable 'eighth' set but not used [-Wunused-but-set-variable] 255 | double won, half, quarter, eighth; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:255:23: warning: variable 'quarter' set but not used [-Wunused-but-set-variable] 255 | double won, half, quarter, eighth; | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:255:17: warning: variable 'half' set but not used [-Wunused-but-set-variable] 255 | double won, half, quarter, eighth; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:253:15: warning: variable 'kkp1' set but not used [-Wunused-but-set-variable] 253 | int kkm1, kkp1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:253:9: warning: variable 'kkm1' set but not used [-Wunused-but-set-variable] 253 | int kkm1, kkp1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:252:15: warning: variable 'jjp1' set but not used [-Wunused-but-set-variable] 252 | int jjm1, jjp1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:252:9: warning: variable 'jjm1' set but not used [-Wunused-but-set-variable] 252 | int jjm1, jjp1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:251:15: warning: variable 'iip1' set but not used [-Wunused-but-set-variable] 251 | int iim1, iip1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:251:9: warning: variable 'iim1' set but not used [-Wunused-but-set-variable] 251 | int iim1, iip1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:250:16: warning: variable 'kp2' set but not used [-Wunused-but-set-variable] 250 | int km2, kp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:250:10: warning: variable 'km2' set but not used [-Wunused-but-set-variable] 250 | int km2, kp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:248:16: warning: variable 'jp2' set but not used [-Wunused-but-set-variable] 248 | int jm2, jp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:248:10: warning: variable 'jm2' set but not used [-Wunused-but-set-variable] 248 | int jm2, jp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:246:16: warning: variable 'ip2' set but not used [-Wunused-but-set-variable] 246 | int im2, ip2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:246:10: warning: variable 'im2' set but not used [-Wunused-but-set-variable] 246 | int im2, ip2; | ^~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.h:58, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c: In function 'VbuildP_op27': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:728:5: note: in expansion of macro 'MAT2' 728 | MAT2(pc, *nxc * *nyc * *nzc, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:727:5: note: in expansion of macro 'MAT2' 727 | MAT2(ac, *nxf * *nyf * *nzf, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c: In function 'VbuildPb_op27': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:818:7: note: in expansion of macro 'MAT3' 818 | MAT3(dPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:817:7: note: in expansion of macro 'MAT3' 817 | MAT3(dPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:816:7: note: in expansion of macro 'MAT3' 816 | MAT3(dPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:815:7: note: in expansion of macro 'MAT3' 815 | MAT3(dPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:814:7: note: in expansion of macro 'MAT3' 814 | MAT3( dPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:813:7: note: in expansion of macro 'MAT3' 813 | MAT3( dPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:812:7: note: in expansion of macro 'MAT3' 812 | MAT3( dPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:811:7: note: in expansion of macro 'MAT3' 811 | MAT3( dPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:810:7: note: in expansion of macro 'MAT3' 810 | MAT3( dPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:809:7: note: in expansion of macro 'MAT3' 809 | MAT3(uPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:808:7: note: in expansion of macro 'MAT3' 808 | MAT3(uPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:807:7: note: in expansion of macro 'MAT3' 807 | MAT3(uPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:806:7: note: in expansion of macro 'MAT3' 806 | MAT3(uPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:805:7: note: in expansion of macro 'MAT3' 805 | MAT3( uPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:804:7: note: in expansion of macro 'MAT3' 804 | MAT3( uPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:803:7: note: in expansion of macro 'MAT3' 803 | MAT3( uPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:802:7: note: in expansion of macro 'MAT3' 802 | MAT3( uPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:801:7: note: in expansion of macro 'MAT3' 801 | MAT3( uPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:800:7: note: in expansion of macro 'MAT3' 800 | MAT3(oPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:799:7: note: in expansion of macro 'MAT3' 799 | MAT3(oPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:798:7: note: in expansion of macro 'MAT3' 798 | MAT3(oPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:797:7: note: in expansion of macro 'MAT3' 797 | MAT3(oPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:796:7: note: in expansion of macro 'MAT3' 796 | MAT3( oPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:795:7: note: in expansion of macro 'MAT3' 795 | MAT3( oPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:794:7: note: in expansion of macro 'MAT3' 794 | MAT3( oPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:793:7: note: in expansion of macro 'MAT3' 793 | MAT3( oPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:792:7: note: in expansion of macro 'MAT3' 792 | MAT3( oPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:791:7: note: in expansion of macro 'MAT3' 791 | MAT3( uSW, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:790:7: note: in expansion of macro 'MAT3' 790 | MAT3( uSE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:789:7: note: in expansion of macro 'MAT3' 789 | MAT3( uNW, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:788:7: note: in expansion of macro 'MAT3' 788 | MAT3( uNE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:787:7: note: in expansion of macro 'MAT3' 787 | MAT3( uS, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:786:7: note: in expansion of macro 'MAT3' 786 | MAT3( uN, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:785:7: note: in expansion of macro 'MAT3' 785 | MAT3( uW, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:784:7: note: in expansion of macro 'MAT3' 784 | MAT3( uE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:783:7: note: in expansion of macro 'MAT3' 783 | MAT3( oNW, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:782:7: note: in expansion of macro 'MAT3' 782 | MAT3( oNE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:781:7: note: in expansion of macro 'MAT3' 781 | MAT3( uC, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:780:7: note: in expansion of macro 'MAT3' 780 | MAT3( oN, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:779:7: note: in expansion of macro 'MAT3' 779 | MAT3( oE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:778:7: note: in expansion of macro 'MAT3' 778 | MAT3( oC, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:776:34: warning: variable 'eighth' set but not used [-Wunused-but-set-variable] 776 | double won, half, quarter, eighth; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:776:25: warning: variable 'quarter' set but not used [-Wunused-but-set-variable] 776 | double won, half, quarter, eighth; | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:776:19: warning: variable 'half' set but not used [-Wunused-but-set-variable] 776 | double won, half, quarter, eighth; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:774:17: warning: variable 'kkp1' set but not used [-Wunused-but-set-variable] 774 | int kkm1, kkp1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:774:11: warning: variable 'kkm1' set but not used [-Wunused-but-set-variable] 774 | int kkm1, kkp1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:773:17: warning: variable 'jjp1' set but not used [-Wunused-but-set-variable] 773 | int jjm1, jjp1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:773:11: warning: variable 'jjm1' set but not used [-Wunused-but-set-variable] 773 | int jjm1, jjp1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:772:17: warning: variable 'iip1' set but not used [-Wunused-but-set-variable] 772 | int iim1, iip1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:772:11: warning: variable 'iim1' set but not used [-Wunused-but-set-variable] 772 | int iim1, iip1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:771:18: warning: variable 'kp2' set but not used [-Wunused-but-set-variable] 771 | int km2, kp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:771:12: warning: variable 'km2' set but not used [-Wunused-but-set-variable] 771 | int km2, kp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:769:18: warning: variable 'jp2' set but not used [-Wunused-but-set-variable] 769 | int jm2, jp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:769:12: warning: variable 'jm2' set but not used [-Wunused-but-set-variable] 769 | int jm2, jp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:767:18: warning: variable 'ip2' set but not used [-Wunused-but-set-variable] 767 | int im2, ip2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:767:12: warning: variable 'im2' set but not used [-Wunused-but-set-variable] 767 | int im2, ip2; | ^~~ make[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 38%] Built target iapbs make[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 37%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/gsd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c: In function 'Vgsrb': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:67:5: note: in expansion of macro 'MAT2' 67 | MAT2(ac, *nx * *ny * *nz, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c: In function 'Vgsrb7x': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:116:5: note: in expansion of macro 'MAT3' 116 | MAT3(oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:115:5: note: in expansion of macro 'MAT3' 115 | MAT3(uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:114:5: note: in expansion of macro 'MAT3' 114 | MAT3(oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:113:5: note: in expansion of macro 'MAT3' 113 | MAT3(oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:111:5: note: in expansion of macro 'MAT3' 111 | MAT3( r, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_r' [-Wunused-variable] 78 | int dy_##mat = dy; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:111:5: note: in expansion of macro 'MAT3' 111 | MAT3( r, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_r' [-Wunused-variable] 77 | int dx_##mat = dx; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:111:5: note: in expansion of macro 'MAT3' 111 | MAT3( r, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w2' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:110:5: note: in expansion of macro 'MAT3' 110 | MAT3(w2, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_w2' [-Wunused-variable] 78 | int dy_##mat = dy; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:110:5: note: in expansion of macro 'MAT3' 110 | MAT3(w2, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_w2' [-Wunused-variable] 77 | int dx_##mat = dx; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:110:5: note: in expansion of macro 'MAT3' 110 | MAT3(w2, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:109:5: note: in expansion of macro 'MAT3' 109 | MAT3(w1, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_w1' [-Wunused-variable] 78 | int dy_##mat = dy; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:109:5: note: in expansion of macro 'MAT3' 109 | MAT3(w1, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_w1' [-Wunused-variable] 77 | int dx_##mat = dx; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:109:5: note: in expansion of macro 'MAT3' 109 | MAT3(w1, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:108:5: note: in expansion of macro 'MAT3' 108 | MAT3( x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:107:5: note: in expansion of macro 'MAT3' 107 | MAT3(fc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:106:5: note: in expansion of macro 'MAT3' 106 | MAT3(cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c: In function 'Vgsrb27x': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:208:5: note: in expansion of macro 'MAT3' 208 | MAT3(uSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:207:5: note: in expansion of macro 'MAT3' 207 | MAT3(uSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:206:5: note: in expansion of macro 'MAT3' 206 | MAT3(uNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:205:5: note: in expansion of macro 'MAT3' 205 | MAT3(uNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:204:5: note: in expansion of macro 'MAT3' 204 | MAT3( uS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:203:5: note: in expansion of macro 'MAT3' 203 | MAT3( uN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:202:5: note: in expansion of macro 'MAT3' 202 | MAT3( uW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:201:5: note: in expansion of macro 'MAT3' 201 | MAT3( uE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:199:5: note: in expansion of macro 'MAT3' 199 | MAT3(oNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:198:5: note: in expansion of macro 'MAT3' 198 | MAT3(oNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:196:5: note: in expansion of macro 'MAT3' 196 | MAT3(oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:195:5: note: in expansion of macro 'MAT3' 195 | MAT3(uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:194:5: note: in expansion of macro 'MAT3' 194 | MAT3(oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:193:5: note: in expansion of macro 'MAT3' 193 | MAT3(oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:191:5: note: in expansion of macro 'MAT3' 191 | MAT3( r, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_r' [-Wunused-variable] 78 | int dy_##mat = dy; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:191:5: note: in expansion of macro 'MAT3' 191 | MAT3( r, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_r' [-Wunused-variable] 77 | int dx_##mat = dx; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:191:5: note: in expansion of macro 'MAT3' 191 | MAT3( r, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w2' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:190:5: note: in expansion of macro 'MAT3' 190 | MAT3(w2, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_w2' [-Wunused-variable] 78 | int dy_##mat = dy; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:190:5: note: in expansion of macro 'MAT3' 190 | MAT3(w2, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_w2' [-Wunused-variable] 77 | int dx_##mat = dx; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:190:5: note: in expansion of macro 'MAT3' 190 | MAT3(w2, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:189:5: note: in expansion of macro 'MAT3' 189 | MAT3(w1, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_w1' [-Wunused-variable] 78 | int dy_##mat = dy; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:189:5: note: in expansion of macro 'MAT3' 189 | MAT3(w1, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_w1' [-Wunused-variable] 77 | int dx_##mat = dx; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:189:5: note: in expansion of macro 'MAT3' 189 | MAT3(w1, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:188:5: note: in expansion of macro 'MAT3' 188 | MAT3( x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:187:5: note: in expansion of macro 'MAT3' 187 | MAT3(fc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:186:5: note: in expansion of macro 'MAT3' 186 | MAT3( cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:182:9: warning: variable 'istep' set but not used [-Wunused-but-set-variable] 182 | int istep; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:180:17: warning: variable 'k2' set but not used [-Wunused-but-set-variable] 180 | int i2, j2, k2; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:180:13: warning: variable 'j2' set but not used [-Wunused-but-set-variable] 180 | int i2, j2, k2; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:180:9: warning: variable 'i2' set but not used [-Wunused-but-set-variable] 180 | int i2, j2, k2; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:179:17: warning: variable 'k1' set but not used [-Wunused-but-set-variable] 179 | int i1, j1, k1; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:179:13: warning: variable 'j1' set but not used [-Wunused-but-set-variable] 179 | int i1, j1, k1; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:179:9: warning: variable 'i1' set but not used [-Wunused-but-set-variable] 179 | int i1, j1, k1; | ^~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 41%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgcsd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mgcsd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgcsd.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgcsd.h:58, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgcsd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgcsd.c: In function 'Vmvcs': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgcsd.c:99:5: note: in expansion of macro 'MAT2' 99 | MAT2(iz, 50, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgcsd.c:303:13: warning: 'rsnrm' may be used uninitialized in this function [-Wmaybe-uninitialized] 303 | Vprtstp(*iok, *iters, rsnrm, rsden, orsnrm); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgcsd.c:562:37: warning: 'rsden' may be used uninitialized in this function [-Wmaybe-uninitialized] 562 | } while (*iters<*itmax && (rsnrm/rsden) > *errtol); | ~~~~~~^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 42%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c: In function 'Vmgdriv': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c:85:9: warning: unused variable 'ierror' [-Wunused-variable] 85 | int ierror = 0; | ^~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.h:62, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c: In function 'Vmgdriv2': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c:267:5: note: in expansion of macro 'MAT2' 267 | MAT2(iz, 50, nlev); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c:234:12: warning: unused variable 'tsolve' [-Wunused-variable] 234 | double tsolve = 0.0; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c:233:12: warning: unused variable 'tsetupc' [-Wunused-variable] 233 | double tsetupc = 0.0; | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c:232:12: warning: unused variable 'tsetupf' [-Wunused-variable] 232 | double tsetupf = 0.0; | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c:231:12: warning: unused variable 'oh' [-Wunused-variable] 231 | double oh = 0.0; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c:230:12: warning: unused variable 'bf' [-Wunused-variable] 230 | double bf = 0.0; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c:226:12: warning: unused variable 'epsmac' [-Wunused-variable] 226 | double epsmac = 0.0; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c: In function 'Vmgsz': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c:655:26: warning: 'num_narrc_oper' may be used uninitialized in this function [-Wmaybe-uninitialized] 655 | + (num_narrc + num_narrc_oper) * *narrc | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c:656:13: warning: 'n_band' may be used uninitialized in this function [-Wmaybe-uninitialized] 653 | *iretot = num_narr * *narr | ~~~~~~~~~~~~~~~~ 654 | + (num_nf + num_nf_oper) * *nf | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 | + (num_narrc + num_narrc_oper) * *narrc | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 | + n_band | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c:654:41: warning: 'num_nf_oper' may be used uninitialized in this function [-Wmaybe-uninitialized] 654 | + (num_nf + num_nf_oper) * *nf | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 43%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgsubd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mgsubd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.h:58, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c: In function 'Vbuildops': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:83:5: note: in expansion of macro 'MAT2' 83 | MAT2(iz, 50, *nlev); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c: In function 'Vbuildstr': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:266:5: note: in expansion of macro 'MAT2' 266 | MAT2(iz, 50, *nlev); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c: In function 'Vbuildcopy0': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fcf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:628:5: note: in expansion of macro 'MAT3' 628 | MAT3( fcf, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_ccf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:627:5: note: in expansion of macro 'MAT3' 627 | MAT3( ccf, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_tcf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:626:5: note: in expansion of macro 'MAT3' 626 | MAT3( tcf, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a3cf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:625:5: note: in expansion of macro 'MAT3' 625 | MAT3(a3cf, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a2cf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:624:5: note: in expansion of macro 'MAT3' 624 | MAT3(a2cf, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a1cf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:623:5: note: in expansion of macro 'MAT3' 623 | MAT3(a1cf, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gzcf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:622:5: note: in expansion of macro 'MAT3' 622 | MAT3(gzcf, *nxf, *nyf, 4); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gycf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:621:5: note: in expansion of macro 'MAT3' 621 | MAT3(gycf, *nxf, *nzf, 4); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gxcf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:620:5: note: in expansion of macro 'MAT3' 620 | MAT3(gxcf, *nyf, *nzf, 4); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_tc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:619:5: note: in expansion of macro 'MAT3' 619 | MAT3( tc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:618:5: note: in expansion of macro 'MAT3' 618 | MAT3( fc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:617:5: note: in expansion of macro 'MAT3' 617 | MAT3( cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a3c' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:616:5: note: in expansion of macro 'MAT3' 616 | MAT3( a3c, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a2c' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:615:5: note: in expansion of macro 'MAT3' 615 | MAT3( a2c, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a1c' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:614:5: note: in expansion of macro 'MAT3' 614 | MAT3( a1c, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gzc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:613:5: note: in expansion of macro 'MAT3' 613 | MAT3( gzc, *nx, *ny, 4); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gyc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:612:5: note: in expansion of macro 'MAT3' 612 | MAT3( gyc, *nx, *nz, 4); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gxc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:611:5: note: in expansion of macro 'MAT3' 611 | MAT3( gxc, *ny, *nz, 4); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c: In function 'Vbuildalg': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:914:5: note: in expansion of macro 'MAT2' 914 | MAT2(iz, 50, *nlev); | ^~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 44%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mikpckd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mikpckd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.h:58, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'Vxcopy': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:60:5: note: in expansion of macro 'MAT3' 60 | MAT3(y, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:59:5: note: in expansion of macro 'MAT3' 59 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'Vxcopy_small': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:78:5: note: in expansion of macro 'MAT3' 78 | MAT3(y, *nx - 2, *ny - 2, *nz - 2); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:77:5: note: in expansion of macro 'MAT3' 77 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'Vxcopy_large': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:99:5: note: in expansion of macro 'MAT3' 99 | MAT3(y, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:98:5: note: in expansion of macro 'MAT3' 98 | MAT3(x, *nx - 2, *ny - 2, *nz - 2); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'Vxaxpy': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:117:5: note: in expansion of macro 'MAT3' 117 | MAT3(y, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:116:5: note: in expansion of macro 'MAT3' 116 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'Vxnrm1': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:136:5: note: in expansion of macro 'MAT3' 136 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'Vxnrm2': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:157:5: note: in expansion of macro 'MAT3' 157 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'Vxdot': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:182:5: note: in expansion of macro 'MAT3' 182 | MAT3(y, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:181:5: note: in expansion of macro 'MAT3' 181 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'Vazeros': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:198:9: warning: unused variable 'nproc' [-Wunused-variable] 198 | int nproc = 1; | ^~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.h:58, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'VfboundPMG': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gzc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:218:5: note: in expansion of macro 'MAT3' 218 | MAT3(gzc, *nx, *ny, 2); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gyc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:217:5: note: in expansion of macro 'MAT3' 217 | MAT3(gyc, *nx, *nz, 2); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gxc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:216:5: note: in expansion of macro 'MAT3' 216 | MAT3(gxc, *ny, *nz, 2); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:215:5: note: in expansion of macro 'MAT3' 215 | MAT3( x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'VfboundPMG00': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:262:5: note: in expansion of macro 'MAT3' 262 | MAT3( x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'Vaxrand': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:295:12: warning: variable 'xdum' set but not used [-Wunused-but-set-variable] 295 | double xdum; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:293:33: warning: variable 'iflag' set but not used [-Wunused-but-set-variable] 293 | int n, i, ii, ipara, ivect, iflag; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:293:26: warning: variable 'ivect' set but not used [-Wunused-but-set-variable] 293 | int n, i, ii, ipara, ivect, iflag; | ^~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.h:58, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'Vxscal': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:322:5: note: in expansion of macro 'MAT3' 322 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'Vprtmatd': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:337:5: note: in expansion of macro 'MAT2' 337 | MAT2(ac, *nx * *ny * *nz, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'Vprtmatd7': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:370:5: note: in expansion of macro 'MAT3' 370 | MAT3(uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:369:5: note: in expansion of macro 'MAT3' 369 | MAT3(oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:368:5: note: in expansion of macro 'MAT3' 368 | MAT3(oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:367:5: note: in expansion of macro 'MAT3' 367 | MAT3(oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'Vprtmatd27': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:415:5: note: in expansion of macro 'MAT3' 415 | MAT3(uSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:414:5: note: in expansion of macro 'MAT3' 414 | MAT3(uSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:413:5: note: in expansion of macro 'MAT3' 413 | MAT3(uNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:412:5: note: in expansion of macro 'MAT3' 412 | MAT3(uNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:411:5: note: in expansion of macro 'MAT3' 411 | MAT3( uS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:410:5: note: in expansion of macro 'MAT3' 410 | MAT3( uN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:409:5: note: in expansion of macro 'MAT3' 409 | MAT3( uW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:408:5: note: in expansion of macro 'MAT3' 408 | MAT3( uE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:407:5: note: in expansion of macro 'MAT3' 407 | MAT3(oNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:406:5: note: in expansion of macro 'MAT3' 406 | MAT3(oNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:405:5: note: in expansion of macro 'MAT3' 405 | MAT3( uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:404:5: note: in expansion of macro 'MAT3' 404 | MAT3( oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:403:5: note: in expansion of macro 'MAT3' 403 | MAT3( oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:402:5: note: in expansion of macro 'MAT3' 402 | MAT3( oC, *nx, *ny, *nz); | ^~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 45%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mlinpckd.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mlinpckd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mlinpckd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mlinpckd.c: In function 'Vdpbsl': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_abd' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mlinpckd.c:62:5: note: in expansion of macro 'MAT2' 62 | MAT2(abd, *lda, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mlinpckd.c: In function 'Vdpbfa': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_abd' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mlinpckd.c:199:5: note: in expansion of macro 'MAT2' 199 | MAT2(abd, *lda, 1); | ^~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 7%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildGd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c: In function 'VbuildG': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:64:5: note: in expansion of macro 'MAT2' 64 | MAT2( ac, *nxc * *nyc * *nzc, 27); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_acFF' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:63:5: note: in expansion of macro 'MAT2' 63 | MAT2(acFF, *nxf * *nyf * *nzf, 27); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pcFF' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:62:5: note: in expansion of macro 'MAT2' 62 | MAT2(pcFF, *nxc * *nyc * *nzc, 27); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c: In function 'VbuildG_1': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:216:5: note: in expansion of macro 'MAT3' 216 | MAT3(dPSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:215:5: note: in expansion of macro 'MAT3' 215 | MAT3(dPSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:214:5: note: in expansion of macro 'MAT3' 214 | MAT3(dPNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:213:5: note: in expansion of macro 'MAT3' 213 | MAT3(dPNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:212:5: note: in expansion of macro 'MAT3' 212 | MAT3( dPW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:211:5: note: in expansion of macro 'MAT3' 211 | MAT3( dPE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:210:5: note: in expansion of macro 'MAT3' 210 | MAT3( dPS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:209:5: note: in expansion of macro 'MAT3' 209 | MAT3( dPN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:208:5: note: in expansion of macro 'MAT3' 208 | MAT3( dPC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:206:5: note: in expansion of macro 'MAT3' 206 | MAT3(uPSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:205:5: note: in expansion of macro 'MAT3' 205 | MAT3(uPSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:204:5: note: in expansion of macro 'MAT3' 204 | MAT3(uPNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:203:5: note: in expansion of macro 'MAT3' 203 | MAT3(uPNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:202:5: note: in expansion of macro 'MAT3' 202 | MAT3( uPW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:201:5: note: in expansion of macro 'MAT3' 201 | MAT3( uPE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:200:5: note: in expansion of macro 'MAT3' 200 | MAT3( uPS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:199:5: note: in expansion of macro 'MAT3' 199 | MAT3( uPN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:198:5: note: in expansion of macro 'MAT3' 198 | MAT3( uPC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:196:5: note: in expansion of macro 'MAT3' 196 | MAT3(oPSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:195:5: note: in expansion of macro 'MAT3' 195 | MAT3(oPSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:194:5: note: in expansion of macro 'MAT3' 194 | MAT3(oPNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:193:5: note: in expansion of macro 'MAT3' 193 | MAT3(oPNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:192:5: note: in expansion of macro 'MAT3' 192 | MAT3( oPW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:191:5: note: in expansion of macro 'MAT3' 191 | MAT3( oPE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:190:5: note: in expansion of macro 'MAT3' 190 | MAT3( oPS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:189:5: note: in expansion of macro 'MAT3' 189 | MAT3( oPN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:188:5: note: in expansion of macro 'MAT3' 188 | MAT3( oPC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:186:5: note: in expansion of macro 'MAT3' 186 | MAT3(XuSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:185:5: note: in expansion of macro 'MAT3' 185 | MAT3(XuSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:184:5: note: in expansion of macro 'MAT3' 184 | MAT3(XuNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:183:5: note: in expansion of macro 'MAT3' 183 | MAT3(XuNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:182:5: note: in expansion of macro 'MAT3' 182 | MAT3( XuS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:181:5: note: in expansion of macro 'MAT3' 181 | MAT3( XuN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:180:5: note: in expansion of macro 'MAT3' 180 | MAT3( XuW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:179:5: note: in expansion of macro 'MAT3' 179 | MAT3( XuE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:177:5: note: in expansion of macro 'MAT3' 177 | MAT3(XoNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:176:5: note: in expansion of macro 'MAT3' 176 | MAT3(XoNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:174:5: note: in expansion of macro 'MAT3' 174 | MAT3( XuC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:172:5: note: in expansion of macro 'MAT3' 172 | MAT3( XoN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:171:5: note: in expansion of macro 'MAT3' 171 | MAT3( XoE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:170:5: note: in expansion of macro 'MAT3' 170 | MAT3( XoC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:168:5: note: in expansion of macro 'MAT3' 168 | MAT3( oC, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:164:21: warning: variable 'nzm1' set but not used [-Wunused-but-set-variable] 164 | int nxm1, nym1, nzm1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:164:15: warning: variable 'nym1' set but not used [-Wunused-but-set-variable] 164 | int nxm1, nym1, nzm1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:164:9: warning: variable 'nxm1' set but not used [-Wunused-but-set-variable] 164 | int nxm1, nym1, nzm1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:163:33: warning: variable 'kkm1' set but not used [-Wunused-but-set-variable] 163 | int iim1, iip1, jjm1, jjp1, kkm1, kkp1; | ^~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c: In function 'VbuildG_7': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:532:5: note: in expansion of macro 'MAT3' 532 | MAT3(dPSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:531:5: note: in expansion of macro 'MAT3' 531 | MAT3(dPSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:530:5: note: in expansion of macro 'MAT3' 530 | MAT3(dPNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:529:5: note: in expansion of macro 'MAT3' 529 | MAT3(dPNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:528:5: note: in expansion of macro 'MAT3' 528 | MAT3( dPW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:527:5: note: in expansion of macro 'MAT3' 527 | MAT3( dPE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:526:5: note: in expansion of macro 'MAT3' 526 | MAT3( dPS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:525:5: note: in expansion of macro 'MAT3' 525 | MAT3( dPN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:524:5: note: in expansion of macro 'MAT3' 524 | MAT3( dPC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:522:5: note: in expansion of macro 'MAT3' 522 | MAT3(uPSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:521:5: note: in expansion of macro 'MAT3' 521 | MAT3(uPSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:520:5: note: in expansion of macro 'MAT3' 520 | MAT3(uPNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:519:5: note: in expansion of macro 'MAT3' 519 | MAT3(uPNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:518:5: note: in expansion of macro 'MAT3' 518 | MAT3( uPW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:517:5: note: in expansion of macro 'MAT3' 517 | MAT3( uPE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:516:5: note: in expansion of macro 'MAT3' 516 | MAT3( uPS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:515:5: note: in expansion of macro 'MAT3' 515 | MAT3( uPN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:514:5: note: in expansion of macro 'MAT3' 514 | MAT3( uPC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:512:5: note: in expansion of macro 'MAT3' 512 | MAT3(oPSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:511:5: note: in expansion of macro 'MAT3' 511 | MAT3(oPSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:510:5: note: in expansion of macro 'MAT3' 510 | MAT3(oPNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:509:5: note: in expansion of macro 'MAT3' 509 | MAT3(oPNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:508:5: note: in expansion of macro 'MAT3' 508 | MAT3( oPW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:507:5: note: in expansion of macro 'MAT3' 507 | MAT3( oPE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:506:5: note: in expansion of macro 'MAT3' 506 | MAT3( oPS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:505:5: note: in expansion of macro 'MAT3' 505 | MAT3( oPN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:504:5: note: in expansion of macro 'MAT3' 504 | MAT3( oPC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:502:5: note: in expansion of macro 'MAT3' 502 | MAT3(XuSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:501:5: note: in expansion of macro 'MAT3' 501 | MAT3(XuSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:500:5: note: in expansion of macro 'MAT3' 500 | MAT3(XuNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:499:5: note: in expansion of macro 'MAT3' 499 | MAT3(XuNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:498:5: note: in expansion of macro 'MAT3' 498 | MAT3( XuS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:497:5: note: in expansion of macro 'MAT3' 497 | MAT3( XuN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:496:5: note: in expansion of macro 'MAT3' 496 | MAT3( XuW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:495:5: note: in expansion of macro 'MAT3' 495 | MAT3( XuE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:494:5: note: in expansion of macro 'MAT3' 494 | MAT3( XuC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:492:5: note: in expansion of macro 'MAT3' 492 | MAT3(XoNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:491:5: note: in expansion of macro 'MAT3' 491 | MAT3(XoNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:490:5: note: in expansion of macro 'MAT3' 490 | MAT3( XoN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:489:5: note: in expansion of macro 'MAT3' 489 | MAT3( XoE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:488:5: note: in expansion of macro 'MAT3' 488 | MAT3( XoC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:486:5: note: in expansion of macro 'MAT3' 486 | MAT3( uC, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:484:5: note: in expansion of macro 'MAT3' 484 | MAT3( oN, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:483:5: note: in expansion of macro 'MAT3' 483 | MAT3( oE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:482:5: note: in expansion of macro 'MAT3' 482 | MAT3( oC, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:473:21: warning: variable 'nzm1' set but not used [-Wunused-but-set-variable] 473 | int nxm1, nym1, nzm1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:473:15: warning: variable 'nym1' set but not used [-Wunused-but-set-variable] 473 | int nxm1, nym1, nzm1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:473:9: warning: variable 'nxm1' set but not used [-Wunused-but-set-variable] 473 | int nxm1, nym1, nzm1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:472:9: warning: variable 'kkm1' set but not used [-Wunused-but-set-variable] 472 | int kkm1, kkp1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:469:28: warning: variable 'kp2' set but not used [-Wunused-but-set-variable] 469 | int km1, kp1, km2, kp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:469:22: warning: variable 'km2' set but not used [-Wunused-but-set-variable] 469 | int km1, kp1, km2, kp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:468:28: warning: variable 'jp2' set but not used [-Wunused-but-set-variable] 468 | int jm1, jp1, jm2, jp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:467:28: warning: variable 'ip2' set but not used [-Wunused-but-set-variable] 467 | int im1, ip1, im2, ip2; | ^~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c: In function 'VbuildG_27': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1380:5: note: in expansion of macro 'MAT3' 1380 | MAT3(dPSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1379:5: note: in expansion of macro 'MAT3' 1379 | MAT3(dPSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1378:5: note: in expansion of macro 'MAT3' 1378 | MAT3(dPNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1377:5: note: in expansion of macro 'MAT3' 1377 | MAT3(dPNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1376:5: note: in expansion of macro 'MAT3' 1376 | MAT3( dPW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1375:5: note: in expansion of macro 'MAT3' 1375 | MAT3( dPE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1374:5: note: in expansion of macro 'MAT3' 1374 | MAT3( dPS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1373:5: note: in expansion of macro 'MAT3' 1373 | MAT3( dPN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1372:5: note: in expansion of macro 'MAT3' 1372 | MAT3( dPC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1370:5: note: in expansion of macro 'MAT3' 1370 | MAT3(uPSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1369:5: note: in expansion of macro 'MAT3' 1369 | MAT3(uPSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1368:5: note: in expansion of macro 'MAT3' 1368 | MAT3(uPNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1367:5: note: in expansion of macro 'MAT3' 1367 | MAT3(uPNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1366:5: note: in expansion of macro 'MAT3' 1366 | MAT3( uPW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1365:5: note: in expansion of macro 'MAT3' 1365 | MAT3( uPE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1364:5: note: in expansion of macro 'MAT3' 1364 | MAT3( uPS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1363:5: note: in expansion of macro 'MAT3' 1363 | MAT3( uPN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1362:5: note: in expansion of macro 'MAT3' 1362 | MAT3( uPC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1360:5: note: in expansion of macro 'MAT3' 1360 | MAT3(oPSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1359:5: note: in expansion of macro 'MAT3' 1359 | MAT3(oPSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1358:5: note: in expansion of macro 'MAT3' 1358 | MAT3(oPNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1357:5: note: in expansion of macro 'MAT3' 1357 | MAT3(oPNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1356:5: note: in expansion of macro 'MAT3' 1356 | MAT3( oPW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1355:5: note: in expansion of macro 'MAT3' 1355 | MAT3( oPE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1354:5: note: in expansion of macro 'MAT3' 1354 | MAT3( oPS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1353:5: note: in expansion of macro 'MAT3' 1353 | MAT3( oPN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1352:5: note: in expansion of macro 'MAT3' 1352 | MAT3( oPC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1350:5: note: in expansion of macro 'MAT3' 1350 | MAT3(XuSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1349:5: note: in expansion of macro 'MAT3' 1349 | MAT3(XuSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1348:5: note: in expansion of macro 'MAT3' 1348 | MAT3(XuNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1347:5: note: in expansion of macro 'MAT3' 1347 | MAT3(XuNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1346:5: note: in expansion of macro 'MAT3' 1346 | MAT3( XuS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1345:5: note: in expansion of macro 'MAT3' 1345 | MAT3( XuN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1344:5: note: in expansion of macro 'MAT3' 1344 | MAT3( XuW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1343:5: note: in expansion of macro 'MAT3' 1343 | MAT3( XuE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1342:5: note: in expansion of macro 'MAT3' 1342 | MAT3( XuC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1340:5: note: in expansion of macro 'MAT3' 1340 | MAT3(XoNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1339:5: note: in expansion of macro 'MAT3' 1339 | MAT3(XoNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1338:5: note: in expansion of macro 'MAT3' 1338 | MAT3( XoN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1337:5: note: in expansion of macro 'MAT3' 1337 | MAT3( XoE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1336:5: note: in expansion of macro 'MAT3' 1336 | MAT3( XoC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1334:5: note: in expansion of macro 'MAT3' 1334 | MAT3( uSW, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1333:5: note: in expansion of macro 'MAT3' 1333 | MAT3( uSE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1332:5: note: in expansion of macro 'MAT3' 1332 | MAT3( uNW, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1331:5: note: in expansion of macro 'MAT3' 1331 | MAT3( uNE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1330:5: note: in expansion of macro 'MAT3' 1330 | MAT3( uS, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1329:5: note: in expansion of macro 'MAT3' 1329 | MAT3( uN, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1328:5: note: in expansion of macro 'MAT3' 1328 | MAT3( uW, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1327:5: note: in expansion of macro 'MAT3' 1327 | MAT3( uE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1326:5: note: in expansion of macro 'MAT3' 1326 | MAT3( uC, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1324:5: note: in expansion of macro 'MAT3' 1324 | MAT3( oNW, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1323:5: note: in expansion of macro 'MAT3' 1323 | MAT3( oNE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1322:5: note: in expansion of macro 'MAT3' 1322 | MAT3( oN, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1321:5: note: in expansion of macro 'MAT3' 1321 | MAT3( oE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1320:5: note: in expansion of macro 'MAT3' 1320 | MAT3( oC, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1277:21: warning: variable 'nzm1' set but not used [-Wunused-but-set-variable] 1277 | int nxm1, nym1, nzm1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1277:15: warning: variable 'nym1' set but not used [-Wunused-but-set-variable] 1277 | int nxm1, nym1, nzm1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1277:9: warning: variable 'nxm1' set but not used [-Wunused-but-set-variable] 1277 | int nxm1, nym1, nzm1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1276:9: warning: variable 'kkm1' set but not used [-Wunused-but-set-variable] 1276 | int kkm1, kkp1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1273:28: warning: variable 'kp2' set but not used [-Wunused-but-set-variable] 1273 | int km1, kp1, km2, kp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1273:22: warning: variable 'km2' set but not used [-Wunused-but-set-variable] 1273 | int km1, kp1, km2, kp2; | ^~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 47%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mypdec.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mypdec.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c: In function 'Vmypdefinitsmpbe': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:96:9: warning: unused variable 'i' [-Wunused-variable] 96 | int i; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c: In function 'Vc_vecsmpbe': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:223:26: warning: variable 'ivect' set but not used [-Wunused-but-set-variable] 223 | int n, i, ii, ipara, ivect; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:223:19: warning: variable 'ipara' set but not used [-Wunused-but-set-variable] 223 | int n, i, ii, ipara, ivect; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:223:15: warning: unused variable 'ii' [-Wunused-variable] 223 | int n, i, ii, ipara, ivect; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:222:9: warning: unused variable 'iion' [-Wunused-variable] 222 | int iion; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:219:28: warning: unused variable 'fact' [-Wunused-variable] 219 | double argument, poly, fact; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:219:22: warning: unused variable 'poly' [-Wunused-variable] 219 | double argument, poly, fact; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:219:12: warning: unused variable 'argument' [-Wunused-variable] 219 | double argument, poly, fact; | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:218:29: warning: unused variable 'am_pos' [-Wunused-variable] 218 | double am_zero, am_neg, am_pos; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:218:21: warning: unused variable 'am_neg' [-Wunused-variable] 218 | double am_zero, am_neg, am_pos; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:217:18: warning: unused variable 'zu2' [-Wunused-variable] 217 | double zcf2, zu2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:217:12: warning: unused variable 'zcf2' [-Wunused-variable] 217 | double zcf2, zu2; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:216:9: warning: unused variable 'ideg' [-Wunused-variable] 216 | int ideg; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c: In function 'Vdc_vec': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:345:9: warning: unused variable 'n' [-Wunused-variable] 345 | int n = *nx * *ny * *nz; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:344:9: warning: unused variable 'i' [-Wunused-variable] 344 | int i; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c: In function 'Vdc_vecpmg': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:360:28: warning: unused variable 'fact' [-Wunused-variable] 360 | double argument, poly, fact; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:360:22: warning: unused variable 'poly' [-Wunused-variable] 360 | double argument, poly, fact; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:357:9: warning: unused variable 'ideg' [-Wunused-variable] 357 | int ideg, iion; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c: In function 'Vdc_vecsmpbe': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:433:16: warning: variable 'ivect' set but not used [-Wunused-but-set-variable] 433 | int ipara, ivect; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:433:9: warning: variable 'ipara' set but not used [-Wunused-but-set-variable] 433 | int ipara, ivect; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:432:15: warning: unused variable 'ii' [-Wunused-variable] 432 | int n, i, ii; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:429:28: warning: unused variable 'fact' [-Wunused-variable] 429 | double argument, poly, fact; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:429:22: warning: unused variable 'poly' [-Wunused-variable] 429 | double argument, poly, fact; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:429:12: warning: unused variable 'argument' [-Wunused-variable] 429 | double argument, poly, fact; | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:428:29: warning: unused variable 'am_pos' [-Wunused-variable] 428 | double am_zero, am_neg, am_pos; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:428:21: warning: unused variable 'am_neg' [-Wunused-variable] 428 | double am_zero, am_neg, am_pos; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:427:18: warning: unused variable 'zu2' [-Wunused-variable] 427 | double zcf2, zu2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:427:12: warning: unused variable 'zcf2' [-Wunused-variable] 427 | double zcf2, zu2; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:426:15: warning: unused variable 'iion' [-Wunused-variable] 426 | int ideg, iion; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:426:9: warning: unused variable 'ideg' [-Wunused-variable] 426 | int ideg, iion; | ^~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 49%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newdrvd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/newdrvd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c: In function 'Vnewdriv': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:86:9: warning: unused variable 'maxlev' [-Wunused-variable] 86 | int maxlev; /// @todo: Doc | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:85:9: warning: unused variable 'ierror' [-Wunused-variable] 85 | int ierror; /// @todo: Doc | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c: In function 'Vnewdriv2': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:223:9: warning: unused variable 'i' [-Wunused-variable] 223 | int i; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:221:12: warning: unused variable 'orsnrm_t' [-Wunused-variable] 221 | double orsnrm_t; | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:220:12: warning: unused variable 'rsden_t' [-Wunused-variable] 220 | double rsden_t; | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:219:12: warning: unused variable 'rsnrm_t' [-Wunused-variable] 219 | double rsnrm_t; | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:218:9: warning: unused variable 'iters_t' [-Wunused-variable] 218 | int iters_t; | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:217:9: warning: unused variable 'iok_t' [-Wunused-variable] 217 | int iok_t; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:215:9: warning: unused variable 'numlev' [-Wunused-variable] 215 | int numlev; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:210:12: warning: unused variable 'tsolve' [-Wunused-variable] 210 | double tsolve; /// @todo: Doc | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:209:12: warning: unused variable 'tsetupc' [-Wunused-variable] 209 | double tsetupc; /// @todo: Doc | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:208:12: warning: unused variable 'tsetupf' [-Wunused-variable] 208 | double tsetupf; /// @todo: Doc | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:207:12: warning: unused variable 'oh' [-Wunused-variable] 207 | double oh; /// @todo: Doc | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:206:12: warning: unused variable 'bf' [-Wunused-variable] 206 | double bf; /// @todo: Doc | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:204:12: warning: variable 'omegal' set but not used [-Wunused-but-set-variable] 204 | double omegal; /// @todo: Doc | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:202:12: warning: unused variable 'epsmac' [-Wunused-variable] 202 | double epsmac; /// @todo: Doc | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 48%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newtond.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/newtond.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newtond.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newtond.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newtond.c:56: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newtond.c: In function 'Vfnewton': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newtond.c:77:5: note: in expansion of macro 'MAT2' 77 | MAT2( iz, 50, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newtond.c: In function 'Vnewton': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newtond.c:187:5: note: in expansion of macro 'MAT2' 187 | MAT2(iz, 50, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newtond.c: In function 'Vgetjac': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newtond.c:560:5: note: in expansion of macro 'MAT2' 560 | MAT2(iz, 50, 1); | ^~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 50%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/powerd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/powerd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/powerd.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/powerd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/powerd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/powerd.c: In function 'Vpower': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/powerd.c:74:5: note: in expansion of macro 'MAT2' 74 | MAT2(iz, 50, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/powerd.c:71:9: warning: unused variable 'skipIters' [-Wunused-variable] 71 | int skipIters = 0; | ^~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/powerd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/powerd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/powerd.c: In function 'Vipower': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/powerd.c:188:5: note: in expansion of macro 'MAT2' 188 | MAT2(iz, 50, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/powerd.c: In function 'Vmpower': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/powerd.c:311:5: note: in expansion of macro 'MAT2' 311 | MAT2(iz, 50, 1); | ^~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 51%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/smoothd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/smoothd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/smoothd.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 40%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/matvecd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.h:55, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vmatvec7': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:87:5: note: in expansion of macro 'MAT2' 87 | MAT2(ac, *nx * *ny * *nz, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vmatvec7_1s': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:112:5: note: in expansion of macro 'MAT3' 112 | MAT3(y, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:111:5: note: in expansion of macro 'MAT3' 111 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:110:5: note: in expansion of macro 'MAT3' 110 | MAT3(oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:109:5: note: in expansion of macro 'MAT3' 109 | MAT3(cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:108:5: note: in expansion of macro 'MAT3' 108 | MAT3(uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:107:5: note: in expansion of macro 'MAT3' 107 | MAT3(oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:106:5: note: in expansion of macro 'MAT3' 106 | MAT3(oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vmatvec27': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:139:5: note: in expansion of macro 'MAT2' 139 | MAT2(ac, *nx * *ny * *nz, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vmatvec27_1s': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:184:5: note: in expansion of macro 'MAT3' 184 | MAT3(uSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:183:5: note: in expansion of macro 'MAT3' 183 | MAT3(uSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:182:5: note: in expansion of macro 'MAT3' 182 | MAT3(uNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:181:5: note: in expansion of macro 'MAT3' 181 | MAT3(uNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:180:5: note: in expansion of macro 'MAT3' 180 | MAT3(uS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:179:5: note: in expansion of macro 'MAT3' 179 | MAT3(uN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:178:5: note: in expansion of macro 'MAT3' 178 | MAT3(uW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:177:5: note: in expansion of macro 'MAT3' 177 | MAT3(uE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:176:5: note: in expansion of macro 'MAT3' 176 | MAT3(uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:174:5: note: in expansion of macro 'MAT3' 174 | MAT3(oNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:173:5: note: in expansion of macro 'MAT3' 173 | MAT3(oNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:172:5: note: in expansion of macro 'MAT3' 172 | MAT3(oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:171:5: note: in expansion of macro 'MAT3' 171 | MAT3(oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:170:5: note: in expansion of macro 'MAT3' 170 | MAT3(oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:168:5: note: in expansion of macro 'MAT3' 168 | MAT3(y, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:167:5: note: in expansion of macro 'MAT3' 167 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:166:5: note: in expansion of macro 'MAT3' 166 | MAT3(cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vnmatvec7': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:263:5: note: in expansion of macro 'MAT2' 263 | MAT2(ac, *nx * *ny * *nz, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vnmatvecd7_1s': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:292:5: note: in expansion of macro 'MAT3' 292 | MAT3(w1, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:291:5: note: in expansion of macro 'MAT3' 291 | MAT3( y, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:290:5: note: in expansion of macro 'MAT3' 290 | MAT3( x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:289:5: note: in expansion of macro 'MAT3' 289 | MAT3(oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:288:5: note: in expansion of macro 'MAT3' 288 | MAT3(cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_cc' [-Wunused-variable] 78 | int dy_##mat = dy; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:288:5: note: in expansion of macro 'MAT3' 288 | MAT3(cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_cc' [-Wunused-variable] 77 | int dx_##mat = dx; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:288:5: note: in expansion of macro 'MAT3' 288 | MAT3(cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:287:5: note: in expansion of macro 'MAT3' 287 | MAT3(uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:286:5: note: in expansion of macro 'MAT3' 286 | MAT3(oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:285:5: note: in expansion of macro 'MAT3' 285 | MAT3(oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vnmatvec27': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:322:5: note: in expansion of macro 'MAT2' 322 | MAT2(ac, *nx * *ny * *nz, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vnmatvecd27_1s': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:370:5: note: in expansion of macro 'MAT3' 370 | MAT3( w1, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:369:5: note: in expansion of macro 'MAT3' 369 | MAT3( y, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:368:5: note: in expansion of macro 'MAT3' 368 | MAT3( x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:367:5: note: in expansion of macro 'MAT3' 367 | MAT3( oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:366:5: note: in expansion of macro 'MAT3' 366 | MAT3( cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_cc' [-Wunused-variable] 78 | int dy_##mat = dy; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:366:5: note: in expansion of macro 'MAT3' 366 | MAT3( cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_cc' [-Wunused-variable] 77 | int dx_##mat = dx; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:366:5: note: in expansion of macro 'MAT3' 366 | MAT3( cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:365:5: note: in expansion of macro 'MAT3' 365 | MAT3(uSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:364:5: note: in expansion of macro 'MAT3' 364 | MAT3(uSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:363:5: note: in expansion of macro 'MAT3' 363 | MAT3(uNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:362:5: note: in expansion of macro 'MAT3' 362 | MAT3(uNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:361:5: note: in expansion of macro 'MAT3' 361 | MAT3( uS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:360:5: note: in expansion of macro 'MAT3' 360 | MAT3( uN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:359:5: note: in expansion of macro 'MAT3' 359 | MAT3( uW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:358:5: note: in expansion of macro 'MAT3' 358 | MAT3( uE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:357:5: note: in expansion of macro 'MAT3' 357 | MAT3(oNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:356:5: note: in expansion of macro 'MAT3' 356 | MAT3(oNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:355:5: note: in expansion of macro 'MAT3' 355 | MAT3( uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:354:5: note: in expansion of macro 'MAT3' 354 | MAT3( oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:353:5: note: in expansion of macro 'MAT3' 353 | MAT3( oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vmresid7': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:451:5: note: in expansion of macro 'MAT2' 451 | MAT2(ac, *nx * *ny * *nz, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vmresid7_1s': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:476:5: note: in expansion of macro 'MAT3' 476 | MAT3(r, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:475:5: note: in expansion of macro 'MAT3' 475 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:474:5: note: in expansion of macro 'MAT3' 474 | MAT3(oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:473:5: note: in expansion of macro 'MAT3' 473 | MAT3(fc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:472:5: note: in expansion of macro 'MAT3' 472 | MAT3(cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:471:5: note: in expansion of macro 'MAT3' 471 | MAT3(uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:470:5: note: in expansion of macro 'MAT3' 470 | MAT3(oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:469:5: note: in expansion of macro 'MAT3' 469 | MAT3(oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vmresid27': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:503:5: note: in expansion of macro 'MAT2' 503 | MAT2(ac, *nx * *ny * *nz, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vmresid27_1s': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:550:5: note: in expansion of macro 'MAT3' 550 | MAT3(uSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:549:5: note: in expansion of macro 'MAT3' 549 | MAT3(uSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:548:5: note: in expansion of macro 'MAT3' 548 | MAT3(uNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:547:5: note: in expansion of macro 'MAT3' 547 | MAT3(uNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:546:5: note: in expansion of macro 'MAT3' 546 | MAT3(uS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:545:5: note: in expansion of macro 'MAT3' 545 | MAT3(uN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:544:5: note: in expansion of macro 'MAT3' 544 | MAT3(uW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:543:5: note: in expansion of macro 'MAT3' 543 | MAT3(uE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:542:5: note: in expansion of macro 'MAT3' 542 | MAT3(uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:540:5: note: in expansion of macro 'MAT3' 540 | MAT3(oNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:539:5: note: in expansion of macro 'MAT3' 539 | MAT3(oNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:538:5: note: in expansion of macro 'MAT3' 538 | MAT3(oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:537:5: note: in expansion of macro 'MAT3' 537 | MAT3(oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:536:5: note: in expansion of macro 'MAT3' 536 | MAT3(oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:534:5: note: in expansion of macro 'MAT3' 534 | MAT3(r, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:533:5: note: in expansion of macro 'MAT3' 533 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:532:5: note: in expansion of macro 'MAT3' 532 | MAT3(fc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:531:5: note: in expansion of macro 'MAT3' 531 | MAT3(cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vnmresid7': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:623:5: note: in expansion of macro 'MAT2' 623 | MAT2(ac, *nx * *ny * *nz, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vnmresid7_1s': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:650:5: note: in expansion of macro 'MAT3' 650 | MAT3(w1, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:649:5: note: in expansion of macro 'MAT3' 649 | MAT3( r, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:648:5: note: in expansion of macro 'MAT3' 648 | MAT3( x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:647:5: note: in expansion of macro 'MAT3' 647 | MAT3(oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:646:5: note: in expansion of macro 'MAT3' 646 | MAT3(fc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:645:5: note: in expansion of macro 'MAT3' 645 | MAT3(cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_cc' [-Wunused-variable] 78 | int dy_##mat = dy; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:645:5: note: in expansion of macro 'MAT3' 645 | MAT3(cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_cc' [-Wunused-variable] 77 | int dx_##mat = dx; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:645:5: note: in expansion of macro 'MAT3' 645 | MAT3(cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:644:5: note: in expansion of macro 'MAT3' 644 | MAT3(uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:643:5: note: in expansion of macro 'MAT3' 643 | MAT3(oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:642:5: note: in expansion of macro 'MAT3' 642 | MAT3(oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vnmresid27': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:681:5: note: in expansion of macro 'MAT2' 681 | MAT2(ac, *nx * *ny * *nz, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vnmresid27_1s': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:727:5: note: in expansion of macro 'MAT3' 727 | MAT3( w1, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:726:5: note: in expansion of macro 'MAT3' 726 | MAT3( r, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:725:5: note: in expansion of macro 'MAT3' 725 | MAT3( x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:724:5: note: in expansion of macro 'MAT3' 724 | MAT3(uSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:723:5: note: in expansion of macro 'MAT3' 723 | MAT3(uSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:722:5: note: in expansion of macro 'MAT3' 722 | MAT3(uNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:721:5: note: in expansion of macro 'MAT3' 721 | MAT3(uNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:720:5: note: in expansion of macro 'MAT3' 720 | MAT3( uS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:719:5: note: in expansion of macro 'MAT3' 719 | MAT3( uN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:718:5: note: in expansion of macro 'MAT3' 718 | MAT3( uW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:717:5: note: in expansion of macro 'MAT3' 717 | MAT3( uE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:716:5: note: in expansion of macro 'MAT3' 716 | MAT3(oNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:715:5: note: in expansion of macro 'MAT3' 715 | MAT3(oNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:714:5: note: in expansion of macro 'MAT3' 714 | MAT3( uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:713:5: note: in expansion of macro 'MAT3' 713 | MAT3( oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:712:5: note: in expansion of macro 'MAT3' 712 | MAT3( oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:711:5: note: in expansion of macro 'MAT3' 711 | MAT3( fc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:710:5: note: in expansion of macro 'MAT3' 710 | MAT3( cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_cc' [-Wunused-variable] 78 | int dy_##mat = dy; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:710:5: note: in expansion of macro 'MAT3' 710 | MAT3( cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_cc' [-Wunused-variable] 77 | int dx_##mat = dx; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:710:5: note: in expansion of macro 'MAT3' 710 | MAT3( cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:709:5: note: in expansion of macro 'MAT3' 709 | MAT3( oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vrestrc': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:786:5: note: in expansion of macro 'MAT2' 786 | MAT2(pc, *nxc * *nyc * *nzc, 1 ); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vrestrc2': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:852:5: note: in expansion of macro 'MAT3' 852 | MAT3(dPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:851:5: note: in expansion of macro 'MAT3' 851 | MAT3(dPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:850:5: note: in expansion of macro 'MAT3' 850 | MAT3(dPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:849:5: note: in expansion of macro 'MAT3' 849 | MAT3(dPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:847:5: note: in expansion of macro 'MAT3' 847 | MAT3(dPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:846:5: note: in expansion of macro 'MAT3' 846 | MAT3(dPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:845:5: note: in expansion of macro 'MAT3' 845 | MAT3(dPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:844:5: note: in expansion of macro 'MAT3' 844 | MAT3(dPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:843:5: note: in expansion of macro 'MAT3' 843 | MAT3(dPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:841:5: note: in expansion of macro 'MAT3' 841 | MAT3(uPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:840:5: note: in expansion of macro 'MAT3' 840 | MAT3(uPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:839:5: note: in expansion of macro 'MAT3' 839 | MAT3(uPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:838:5: note: in expansion of macro 'MAT3' 838 | MAT3(uPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:836:5: note: in expansion of macro 'MAT3' 836 | MAT3(uPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:835:5: note: in expansion of macro 'MAT3' 835 | MAT3(uPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:834:5: note: in expansion of macro 'MAT3' 834 | MAT3(uPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:833:5: note: in expansion of macro 'MAT3' 833 | MAT3(uPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:832:5: note: in expansion of macro 'MAT3' 832 | MAT3(uPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:830:5: note: in expansion of macro 'MAT3' 830 | MAT3(oPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:829:5: note: in expansion of macro 'MAT3' 829 | MAT3(oPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:828:5: note: in expansion of macro 'MAT3' 828 | MAT3(oPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:827:5: note: in expansion of macro 'MAT3' 827 | MAT3(oPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:825:5: note: in expansion of macro 'MAT3' 825 | MAT3(oPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:824:5: note: in expansion of macro 'MAT3' 824 | MAT3(oPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:823:5: note: in expansion of macro 'MAT3' 823 | MAT3(oPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:822:5: note: in expansion of macro 'MAT3' 822 | MAT3(oPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:821:5: note: in expansion of macro 'MAT3' 821 | MAT3(oPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xout' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:819:5: note: in expansion of macro 'MAT3' 819 | MAT3(xout, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xin' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:818:5: note: in expansion of macro 'MAT3' 818 | MAT3(xin, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:816:12: warning: variable 'dimfac' set but not used [-Wunused-but-set-variable] 816 | double dimfac; | ^~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.h:55, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'VinterpPMG': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:920:5: note: in expansion of macro 'MAT2' 920 | MAT2(pc, *nxc * *nyc * *nzc, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'VinterpPMG2': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:982:5: note: in expansion of macro 'MAT3' 982 | MAT3(dPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:981:5: note: in expansion of macro 'MAT3' 981 | MAT3(dPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:980:5: note: in expansion of macro 'MAT3' 980 | MAT3(dPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:979:5: note: in expansion of macro 'MAT3' 979 | MAT3(dPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:977:5: note: in expansion of macro 'MAT3' 977 | MAT3( dPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:976:5: note: in expansion of macro 'MAT3' 976 | MAT3( dPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:975:5: note: in expansion of macro 'MAT3' 975 | MAT3( dPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:974:5: note: in expansion of macro 'MAT3' 974 | MAT3( dPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:973:5: note: in expansion of macro 'MAT3' 973 | MAT3( dPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:971:5: note: in expansion of macro 'MAT3' 971 | MAT3(uPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:970:5: note: in expansion of macro 'MAT3' 970 | MAT3(uPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:969:5: note: in expansion of macro 'MAT3' 969 | MAT3(uPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:968:5: note: in expansion of macro 'MAT3' 968 | MAT3(uPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:966:5: note: in expansion of macro 'MAT3' 966 | MAT3( uPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:965:5: note: in expansion of macro 'MAT3' 965 | MAT3( uPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:964:5: note: in expansion of macro 'MAT3' 964 | MAT3( uPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:963:5: note: in expansion of macro 'MAT3' 963 | MAT3( uPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:962:5: note: in expansion of macro 'MAT3' 962 | MAT3( uPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:960:5: note: in expansion of macro 'MAT3' 960 | MAT3(oPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:959:5: note: in expansion of macro 'MAT3' 959 | MAT3(oPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:958:5: note: in expansion of macro 'MAT3' 958 | MAT3(oPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:957:5: note: in expansion of macro 'MAT3' 957 | MAT3(oPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:955:5: note: in expansion of macro 'MAT3' 955 | MAT3( oPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:954:5: note: in expansion of macro 'MAT3' 954 | MAT3( oPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:953:5: note: in expansion of macro 'MAT3' 953 | MAT3( oPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:952:5: note: in expansion of macro 'MAT3' 952 | MAT3( oPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:951:5: note: in expansion of macro 'MAT3' 951 | MAT3( oPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_oPC' [-Wunused-variable] 78 | int dy_##mat = dy; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:951:5: note: in expansion of macro 'MAT3' 951 | MAT3( oPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_oPC' [-Wunused-variable] 77 | int dx_##mat = dx; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:951:5: note: in expansion of macro 'MAT3' 951 | MAT3( oPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xout' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:949:5: note: in expansion of macro 'MAT3' 949 | MAT3(xout, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xin' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:948:5: note: in expansion of macro 'MAT3' 948 | MAT3( xin, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vextrac': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xout' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:1086:5: note: in expansion of macro 'MAT3' 1086 | MAT3(xout, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xin' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:1085:5: note: in expansion of macro 'MAT3' 1085 | MAT3( xin, *nxf, *nyf, *nzf); | ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 52%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgfasd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mgfasd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgfasd.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 52%] Built target apbs_pmgc make[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f src/CMakeFiles/apbs.dir/build.make src/CMakeFiles/apbs.dir/depend /usr/bin/make -f tools/python/CMakeFiles/_apbslib.dir/build.make tools/python/CMakeFiles/_apbslib.dir/depend In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/smoothd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgfasd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgfasd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgfasd.c: In function 'Vfmvfas': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgfasd.c:79:5: note: in expansion of macro 'MAT2' 79 | MAT2(iz, 50, *nlev); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgfasd.c:74:12: warning: variable 'errd' set but not used [-Wunused-but-set-variable] 74 | double errd; | ^~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/smoothd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgfasd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgfasd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgfasd.c: In function 'Vmvfas': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgfasd.c:182:5: note: in expansion of macro 'MAT2' 182 | MAT2(iz, 50, *nlev); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgfasd.c:171:33: warning: unused variable 'ivariv' [-Wunused-variable] 171 | int itmax_s, iters_s, nuuu, ivariv, mgsmoo_s, iresid; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgfasd.c:359:13: warning: 'rsnrm' may be used uninitialized in this function [-Wmaybe-uninitialized] 359 | Vprtstp(*iok, *iters, rsnrm, rsden, orsnrm); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgfasd.c:597:24: warning: 'rsden' may be used uninitialized in this function [-Wmaybe-uninitialized] 597 | if ((rsnrm / rsden) <= *errtol) | ~~~~~~~^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/CMakeFiles/apbs.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/CMakeFiles/apbs.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/CMakeFiles/apbs.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/CMakeFiles/apbs.dir/depend.internal". Scanning dependencies of target apbs make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f src/CMakeFiles/apbs.dir/build.make src/CMakeFiles/apbs.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python/CMakeFiles/_apbslib.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python/CMakeFiles/_apbslib.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python/CMakeFiles/_apbslib.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python/CMakeFiles/_apbslib.dir/depend.internal". Scanning dependencies of target _apbslib make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/python/CMakeFiles/_apbslib.dir/build.make tools/python/CMakeFiles/_apbslib.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 54%] Linking C shared library ../lib/libapbs.so cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/apbs.dir/link.txt --verbose=1 /usr/bin/gcc -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libapbs.so.1 -o ../lib/libapbs.so.1 generic/CMakeFiles/apbs_generic.dir/nosh.c.o generic/CMakeFiles/apbs_generic.dir/mgparm.c.o generic/CMakeFiles/apbs_generic.dir/femparm.c.o generic/CMakeFiles/apbs_generic.dir/pbamparm.c.o generic/CMakeFiles/apbs_generic.dir/pbsamparm.c.o generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o generic/CMakeFiles/apbs_generic.dir/bemparm.c.o generic/CMakeFiles/apbs_generic.dir/geoflowparm.c.o generic/CMakeFiles/apbs_generic.dir/apolparm.c.o generic/CMakeFiles/apbs_generic.dir/vacc.c.o generic/CMakeFiles/apbs_generic.dir/valist.c.o generic/CMakeFiles/apbs_generic.dir/vatom.c.o generic/CMakeFiles/apbs_generic.dir/vpbe.c.o generic/CMakeFiles/apbs_generic.dir/vcap.c.o generic/CMakeFiles/apbs_generic.dir/vclist.c.o generic/CMakeFiles/apbs_generic.dir/vstring.c.o generic/CMakeFiles/apbs_generic.dir/vparam.c.o generic/CMakeFiles/apbs_generic.dir/vgreen.c.o pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/buildPd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/mgcsd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/mgsubd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/mikpckd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/mypdec.c.o pmgc/CMakeFiles/apbs_pmgc.dir/newtond.c.o pmgc/CMakeFiles/apbs_pmgc.dir/newdrvd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/powerd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/smoothd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/mgfasd.c.o mg/CMakeFiles/apbs_mg.dir/vgrid.c.o mg/CMakeFiles/apbs_mg.dir/vmgrid.c.o mg/CMakeFiles/apbs_mg.dir/vopot.c.o mg/CMakeFiles/apbs_mg.dir/vpmg.c.o mg/CMakeFiles/apbs_mg.dir/vpmgp.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src && /usr/bin/cmake -E cmake_symlink_library ../lib/libapbs.so.1 ../lib/libapbs.so.1 ../lib/libapbs.so make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 55%] Built target apbs make[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f src/CMakeFiles/apbs-bin.dir/build.make src/CMakeFiles/apbs-bin.dir/depend /usr/bin/make -f tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build.make tools/mesh/CMakeFiles/uhbd_asc2bin.dir/depend /usr/bin/make -f tools/mesh/CMakeFiles/tensor2dx.dir/build.make tools/mesh/CMakeFiles/tensor2dx.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/uhbd_asc2bin.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/uhbd_asc2bin.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/uhbd_asc2bin.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/uhbd_asc2bin.dir/depend.internal". Scanning dependencies of target uhbd_asc2bin make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/tensor2dx.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/tensor2dx.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/tensor2dx.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/tensor2dx.dir/depend.internal". Scanning dependencies of target tensor2dx make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/CMakeFiles/apbs-bin.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/CMakeFiles/apbs-bin.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/CMakeFiles/apbs-bin.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/CMakeFiles/apbs-bin.dir/depend.internal". Scanning dependencies of target apbs-bin make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f src/CMakeFiles/apbs-bin.dir/build.make src/CMakeFiles/apbs-bin.dir/build /usr/bin/make -f tools/mesh/CMakeFiles/tensor2dx.dir/build.make tools/mesh/CMakeFiles/tensor2dx.dir/build /usr/bin/make -f tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build.make tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 58%] Building C object tools/mesh/CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -o CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:3: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_grid' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:24:5: note: in expansion of macro 'MAT3' 24 | MAT3(grid, MXGRD, MXGRD, MXGRD); | ^~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:3: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:3: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:3: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:3: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 56%] Building C object tools/mesh/CMakeFiles/tensor2dx.dir/tensor2dx.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -o CMakeFiles/tensor2dx.dir/tensor2dx.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' comp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:30:5: warning: ignoring return value of 'scanf' declared with attribute 'warn_unused_result' [-Wunused-result] 30 | scanf("%s", flnm); | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:42:5: warning: ignoring return value of 'scanf' declared with attribute 'warn_unused_result' [-Wunused-result] 42 | scanf("%s", newfile); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:54:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 54 | fscanf(inFile, "%s", title); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:57:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 57 | fscanf(inFile, "%lf", &scale); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:60:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 60 | fscanf(inFile, "%lf", &dum2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:63:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 63 | fscanf(inFile, "%d", &grdflg); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:66:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 66 | fscanf(inFile, "%d", &idum2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:69:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 69 | fscanf(inFile, "%d", &km); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:72:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 72 | fscanf(inFile, "%d", &one); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:75:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 75 | fscanf(inFile, "%d", &km); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:78:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 78 | fscanf(inFile, "%d", &im); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:81:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 81 | fscanf(inFile, "%d", &jm); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:84:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 84 | fscanf(inFile, "%d", &km); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:87:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 87 | fscanf(inFile, "%lf", &h); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:90:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 90 | fscanf(inFile, "%lf", &ox); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:93:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 93 | fscanf(inFile, "%lf", &oy); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:96:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 96 | fscanf(inFile, "%lf", &oz); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:99:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | fscanf(inFile, "%lf", &dum3); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:102:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 102 | fscanf(inFile, "%lf", &dum4); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:105:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 105 | fscanf(inFile, "%lf", &dum5); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:108:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 108 | fscanf(inFile, "%lf", &dum6); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:111:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 111 | fscanf(inFile, "%lf", &dum7); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:114:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 114 | fscanf(inFile, "%lf", &dum8); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:117:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 117 | fscanf(inFile, "%d", &idum3); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:120:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 120 | fscanf(inFile, "%d", &idum4); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:125:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 125 | fscanf(inFile, "%d", &kk); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:128:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 128 | fscanf(inFile, "%d", &im); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:131:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | fscanf(inFile, "%d", &jm); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:138:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 138 | fscanf(inFile, "%lf", RAT3(grid, i, j, k)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:42:12: warning: unused variable 'index' [-Wunused-variable] 42 | int i,j,k,index,icol; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:42:10: warning: unused variable 'k' [-Wunused-variable] 42 | int i,j,k,index,icol; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:42:8: warning: unused variable 'j' [-Wunused-variable] 42 | int i,j,k,index,icol; | ^ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:14: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:14: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:14: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:14: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:97:2: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fscanf(pfile1,"%lf %lf %lf",&origin_xyz[0],&origin_xyz[1],&origin_xyz[2]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:98:2: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 98 | fscanf(pfile1,"%lf %lf %lf",&gspace[0],&gspace[1],&gspace[2]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:137:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 137 | fscanf(pfile2,"%i %i %i",&itmp[0],&itmp[1],&itmp[2]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:138:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 138 | fscanf(pfile2,"%lf %lf %lf",&datapt[0],&tmp[1],&tmp[2]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:139:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 139 | fscanf(pfile2,"%lf %lf %lf",&tmp[0],&datapt[1],&tmp[2]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:140:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 140 | fscanf(pfile2,"%lf %lf %lf",&tmp[0],&tmp[1],&datapt[2]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:155:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 155 | fscanf(pfile2,"%i %i %i",&itmp[0],&itmp[1],&itmp[2]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:156:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 156 | fscanf(pfile2,"%lf %lf %lf",&datapt[0],&tmp[1],&tmp[2]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:157:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 157 | fscanf(pfile2,"%lf %lf %lf",&tmp[0],&datapt[1],&tmp[2]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:158:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 158 | fscanf(pfile2,"%lf %lf %lf",&tmp[0],&tmp[1],&datapt[2]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 57%] Building C object src/CMakeFiles/apbs-bin.dir/main.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -o CMakeFiles/apbs-bin.dir/main.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/main.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 61%] Linking C executable ../bin/uhbd_asc2bin cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/uhbd_asc2bin.dir/link.txt --verbose=1 /usr/bin/gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o -o ../bin/uhbd_asc2bin ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/main.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/main.c:117:11: warning: unused variable 'gm' [-Wunused-variable] 117 | void *gm[NOSH_MAXMOL]; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/main.c:116:11: warning: variable 'fetk' set but not used [-Wunused-but-set-variable] 116 | void *fetk[NOSH_MAXCALC]; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/main.c:96:18: warning: unused variable 'geoflowparm' [-Wunused-variable] 96 | GEOFLOWparm *geoflowparm = VNULL; | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/main.c:92:14: warning: unused variable 'feparm' [-Wunused-variable] 92 | FEMparm *feparm = VNULL; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/main.c:86:17: warning: unused variable 'te' [-Wunused-variable] 86 | clock_t ts, te; | ^~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/main.c:70: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/main.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/main.c:70: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/main.c:70: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/main.c:70: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 60%] Linking C executable ../bin/tensor2dx cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/tensor2dx.dir/link.txt --verbose=1 /usr/bin/gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/tensor2dx.dir/tensor2dx.c.o -o ../bin/tensor2dx ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 62%] Built target uhbd_asc2bin make[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/mgmesh.dir/build.make tools/mesh/CMakeFiles/mgmesh.dir/depend make[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 62%] Built target tensor2dx make[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/mergedx.dir/build.make tools/mesh/CMakeFiles/mergedx.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/mgmesh.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/mgmesh.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/mgmesh.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/mgmesh.dir/depend.internal". Scanning dependencies of target mgmesh make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/mgmesh.dir/build.make tools/mesh/CMakeFiles/mgmesh.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/mergedx.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/mergedx.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/mergedx.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/mergedx.dir/depend.internal". Scanning dependencies of target mergedx make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/mergedx.dir/build.make tools/mesh/CMakeFiles/mergedx.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 63%] Building C object tools/mesh/CMakeFiles/mgmesh.dir/mgmesh.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -o CMakeFiles/mgmesh.dir/mgmesh.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mgmesh.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mgmesh.c:10: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mgmesh.c:10: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mgmesh.c:10: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mgmesh.c:10: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 65%] Linking C executable ../bin/mgmesh cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/mgmesh.dir/link.txt --verbose=1 /usr/bin/gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mgmesh.dir/mgmesh.c.o -o ../bin/mgmesh ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 65%] Built target mgmesh make[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/del2dx.dir/build.make tools/mesh/CMakeFiles/del2dx.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/del2dx.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/del2dx.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/del2dx.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/del2dx.dir/depend.internal". Scanning dependencies of target del2dx make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/del2dx.dir/build.make tools/mesh/CMakeFiles/del2dx.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 64%] Building C object tools/mesh/CMakeFiles/mergedx.dir/mergedx.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -o CMakeFiles/mergedx.dir/mergedx.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx.c:81:13: warning: 'nz' may be used uninitialized in this function [-Wmaybe-uninitialized] 81 | mgrid = Vgrid_ctor(nx, ny, nz, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, VNULL); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx.c:81:13: warning: 'nx' may be used uninitialized in this function [-Wmaybe-uninitialized] /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx.c:81:13: warning: 'ny' may be used uninitialized in this function [-Wmaybe-uninitialized] make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 68%] Linking C executable ../bin/mergedx cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/mergedx.dir/link.txt --verbose=1 /usr/bin/gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mergedx.dir/mergedx.c.o -o ../bin/mergedx ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 68%] Built target mergedx make[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/smooth.dir/build.make tools/mesh/CMakeFiles/smooth.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 67%] Building C object tools/mesh/CMakeFiles/del2dx.dir/del2dx.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -o CMakeFiles/del2dx.dir/del2dx.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c:45:57: warning: variable 'extent' set but not used [-Wunused-but-set-variable] 45 | float val, xmax, scale, oldmid[3], temp, xdata, range, extent, origin[3], delta[3]; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c:45:43: warning: unused variable 'xdata' [-Wunused-variable] 45 | float val, xmax, scale, oldmid[3], temp, xdata, range, extent, origin[3], delta[3]; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c:45:8: warning: unused variable 'val' [-Wunused-variable] 45 | float val, xmax, scale, oldmid[3], temp, xdata, range, extent, origin[3], delta[3]; | ^~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c:16: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c:16: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c:16: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c:16: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c:76:2: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 76 | fread(&igrid, 1, sizeof(int), pfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c:89:2: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 89 | fread(buffer, 1, sizeof(char) * 10, pfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c:97:2: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fread(data, tot_grid, sizeof(float), pfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c:103:2: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 103 | fread(&scale, 1, sizeof(float), pfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c:106:2: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 106 | fread(oldmid, 3, sizeof(float), pfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/smooth.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/smooth.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/smooth.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/smooth.dir/depend.internal". Scanning dependencies of target smooth make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/smooth.dir/build.make tools/mesh/CMakeFiles/smooth.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 69%] Linking C executable ../bin/del2dx cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/del2dx.dir/link.txt --verbose=1 /usr/bin/gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/del2dx.dir/del2dx.c.o -o ../bin/del2dx ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 70%] Built target del2dx make[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/dxmath.dir/build.make tools/mesh/CMakeFiles/dxmath.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/dxmath.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/dxmath.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/dxmath.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/dxmath.dir/depend.internal". Scanning dependencies of target dxmath make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/dxmath.dir/build.make tools/mesh/CMakeFiles/dxmath.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 70%] Building C object tools/mesh/CMakeFiles/smooth.dir/smooth.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -o CMakeFiles/smooth.dir/smooth.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/smooth.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/smooth.c:13: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/smooth.c:13: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/smooth.c:13: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/smooth.c:13: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bsplmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' ine2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/smooth.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/smooth.c:169:15: warning: 'format' may be used uninitialized in this function [-Wmaybe-uninitialized] 169 | } else if (format == VDF_DXBIN) { | ^ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 72%] Linking C executable ../bin/smooth cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/smooth.dir/link.txt --verbose=1 /usr/bin/gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/smooth.dir/smooth.c.o -o ../bin/smooth ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 72%] Built target smooth make[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/mergedx2.dir/build.make tools/mesh/CMakeFiles/mergedx2.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/mergedx2.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/mergedx2.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/mergedx2.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/mergedx2.dir/depend.internal". Scanning dependencies of target mergedx2 make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/mergedx2.dir/build.make tools/mesh/CMakeFiles/mergedx2.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 71%] Building C object tools/mesh/CMakeFiles/dxmath.dir/dxmath.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -o CMakeFiles/dxmath.dir/dxmath.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dxmath.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dxmath.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dxmath.c:41:10: warning: unused variable 'format' [-Wunused-variable] 41 | char format[VMAX_BUFSIZE]; | ^~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dxmath.c:13: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dxmath.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dxmath.c:13: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dxmath.c:13: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dxmath.c:13: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/buildmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 75%] Linking C executable ../bin/dxmath cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/dxmath.dir/link.txt --verbose=1 /usr/bin/gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/dxmath.dir/dxmath.c.o -o ../bin/dxmath ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 75%] Built target dxmath make[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/benchmark.dir/build.make tools/mesh/CMakeFiles/benchmark.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/benchmark.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/benchmark.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/benchmark.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/benchmark.dir/depend.internal". Scanning dependencies of target benchmark make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/benchmark.dir/build.make tools/mesh/CMakeFiles/benchmark.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 76%] Building C object tools/mesh/CMakeFiles/benchmark.dir/benchmark.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -o CMakeFiles/benchmark.dir/benchmark.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:28:12: warning: unused variable 'grid' [-Wunused-variable] 28 | Vgrid *grid; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:18:58: warning: unused variable 'sum' [-Wunused-variable] 18 | double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:18:51: warning: unused variable 'value' [-Wunused-variable] 18 | double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:18:44: warning: unused variable 'pt' [-Wunused-variable] 18 | double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:18:38: warning: variable 'zmin' set but not used [-Wunused-but-set-variable] 18 | double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:18:32: warning: variable 'ymin' set but not used [-Wunused-but-set-variable] 18 | double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:18:26: warning: variable 'xmin' set but not used [-Wunused-but-set-variable] 18 | double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:18:20: warning: variable 'hzed' set but not used [-Wunused-but-set-variable] 18 | double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:18:16: warning: variable 'hx' set but not used [-Wunused-but-set-variable] 18 | double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:18:12: warning: variable 'hy' set but not used [-Wunused-but-set-variable] 18 | double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:17:27: warning: unused variable 'k' [-Wunused-variable] 17 | int nx, ny, nz, i, j, k, itmp; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:17:24: warning: unused variable 'j' [-Wunused-variable] 17 | int nx, ny, nz, i, j, k, itmp; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:17:21: warning: unused variable 'i' [-Wunused-variable] 17 | int nx, ny, nz, i, j, k, itmp; | ^ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'Pmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' BAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 74%] Building C object tools/mesh/CMakeFiles/mergedx2.dir/mergedx2.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -o CMakeFiles/mergedx2.dir/mergedx2.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx2.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx2.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx2.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx2.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx2.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 77%] Linking C executable ../bin/benchmark cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/benchmark.dir/link.txt --verbose=1 /usr/bin/gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/benchmark.dir/benchmark.c.o -o ../bin/benchmark ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 78%] Built target benchmark make[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/dx2mol.dir/build.make tools/mesh/CMakeFiles/dx2mol.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/dx2mol.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/dx2mol.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/dx2mol.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/dx2mol.dir/depend.internal". Scanning dependencies of target dx2mol make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/dx2mol.dir/build.make tools/mesh/CMakeFiles/dx2mol.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 78%] Linking C executable ../bin/mergedx2 cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/mergedx2.dir/link.txt --verbose=1 /usr/bin/gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mergedx2.dir/mergedx2.c.o -o ../bin/mergedx2 ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 80%] Built target mergedx2 make[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/value.dir/build.make tools/mesh/CMakeFiles/value.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/value.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/value.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/value.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/value.dir/depend.internal". Scanning dependencies of target value make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/value.dir/build.make tools/mesh/CMakeFiles/value.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 62%] Building C object src/CMakeFiles/apbs-bin.dir/routines.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -o CMakeFiles/apbs-bin.dir/routines.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'loadDielMaps': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:296:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 296 | for (ii=0; ii<(nx*ny*nz); ii++) | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:298:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 298 | sum = sum*hx*hy*hzed; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:331:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 331 | for (ii=0; ii<(nx*ny*nz); ii++) | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:333:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 333 | sum = sum*hx*hy*hzed; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:420:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 420 | for (ii=0; ii<(nx*ny*nz); ii++) | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:422:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 422 | sum = sum*hx*hy*hzed; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:454:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 454 | for (ii=0; ii<(nx*ny*nz); ii++) | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:456:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 456 | sum = sum*hx*hy*hzed; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'initMG': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:1234:12: warning: variable 'iparm' set but not used [-Wunused-but-set-variable] 1234 | iparm, | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'energyMG': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:1584:13: warning: variable 'mgparm' set but not used [-Wunused-but-set-variable] 1584 | MGparm *mgparm; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'writematMG': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:1803:10: warning: variable 'mxtype' set but not used [-Wunused-but-set-variable] 1803 | char mxtype[3]; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'printApolForce': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:3485:12: warning: variable 'scalar' set but not used [-Wunused-but-set-variable] 3485 | scalar, | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:3484:12: warning: variable 'temp' set but not used [-Wunused-but-set-variable] 3484 | double temp, | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'initAPOL': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4496:12: warning: variable 'sav' set but not used [-Wunused-but-set-variable] 4496 | sav, /**< @todo document */ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4495:12: warning: variable 'sasa' set but not used [-Wunused-but-set-variable] 4495 | double sasa, /**< @todo document */ | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4489:12: warning: unused variable 'ts' [-Wunused-variable] 4489 | time_t ts; /**< Temporary timing variable for debugging (PCE) */ | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'forceAPOL': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4753:13: warning: unused variable 'apos' [-Wunused-variable] 4753 | *apos; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4737:46: warning: unused variable 'ts_sub' [-Wunused-variable] 4737 | time_t ts, ts_main, ts_sub; | ^~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'writematMG': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:1840:30: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 1840 | sprintf(outpath, "%s.%s", writematstem, "mat"); | ^~ ~~~~~ In file included from /usr/include/stdio.h:872, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'writedataFlat': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2105:33: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2105 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na * /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'writedataXML': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2363:33: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2363 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na * /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'writedataMG': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2676:30: warning: '%s' directive writing 5 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2676 | sprintf(outpath, "%s.%s", writestem, "dxbin"); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:872, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 7 and 1030 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2720:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2720 | sprintf(outpath, "%s.%s", writestem, "txt"); | ^~ ~~~~~ In file included from /usr/include/stdio.h:872, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2711:38: warning: '%s' directive writing 5 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2711 | sprintf(outpath, "%s.%s", writestem, "dx.gz"); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:872, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 7 and 1030 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2694:38: warning: '%s' directive writing 4 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2694 | sprintf(outpath, "%s.%s", writestem, "mcsf"); | ^~ ~~~~~~ In file included from /usr/include/stdio.h:872, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 6 and 1029 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2687:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2687 | sprintf(outpath, "%s.%s", writestem, "ucd"); | ^~ ~~~~~ In file included from /usr/include/stdio.h:872, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2701:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2701 | sprintf(outpath, "%s.%s", writestem, "grd"); | ^~ ~~~~~ In file included from /usr/include/stdio.h:872, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2666:38: warning: '%s' directive writing 2 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2666 | sprintf(outpath, "%s.%s", writestem, "dx"); | ^~ ~~~~ In file included from /usr/include/stdio.h:872, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 4 and 1027 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'returnEnergy': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2778:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2778 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na * /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'printEnergy': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2839:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2839 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na * /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'printElecEnergy': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2904:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2904 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na * /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'printApolEnergy': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2970:18: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2970 | gtenergy += (scalar * ((apolparm->gamma*apolparm->sasa) + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2971 | (apolparm->press*apolparm->sav) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2972 | (apolparm->wcaEnergy))); | ~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'initAPOL': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4547:30: warning: 'center[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] 4547 | disp[0] = (x - center[0]); | ~~~~~~^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4548:30: warning: 'center[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] 4548 | disp[1] = (y - center[1]); | ~~~~~~^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4549:30: warning: 'center[2]' may be used uninitialized in this function [-Wmaybe-uninitialized] 4549 | disp[2] = (z - center[2]); | ~~~~~~^~~ make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 80%] Building C object tools/mesh/CMakeFiles/dx2mol.dir/dx2mol.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -o CMakeFiles/dx2mol.dir/dx2mol.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2mol.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2mol.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2mol.c:28:12: warning: unused variable 'avg' [-Wunused-variable] 28 | double avg; | ^~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2mol.c:19: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2mol.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2mol.c:19: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2mol.c:19: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2mol.c:19: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 81%] Building C object tools/mesh/CMakeFiles/value.dir/value.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -o CMakeFiles/value.dir/value.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/value.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/value.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/value.c:37:9: warning: unused variable 'inorm' [-Wunused-variable] 37 | int inorm; | ^~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/value.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/value.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/value.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/value.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/value.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 82%] Linking C executable ../bin/apbs cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/apbs-bin.dir/link.txt --verbose=1 /usr/bin/gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/apbs-bin.dir/main.c.o CMakeFiles/apbs-bin.dir/routines.c.o -o ../bin/apbs -lm -lstdc++ -lmaloc -fopenmp ../lib/libapbs.so.1 make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 84%] Built target apbs-bin make[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/multivalue.dir/build.make tools/mesh/CMakeFiles/multivalue.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 83%] Linking C executable ../bin/dx2mol cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/dx2mol.dir/link.txt --verbose=1 /usr/bin/gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/dx2mol.dir/dx2mol.c.o -o ../bin/dx2mol ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/multivalue.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/multivalue.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/multivalue.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/multivalue.dir/depend.internal". Scanning dependencies of target multivalue make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/multivalue.dir/build.make tools/mesh/CMakeFiles/multivalue.dir/build [ 84%] Linking C executable ../bin/value cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/value.dir/link.txt --verbose=1 /usr/bin/gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/value.dir/value.c.o -o ../bin/value ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 84%] Built target dx2mol make[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/similarity.dir/build.make tools/mesh/CMakeFiles/similarity.dir/depend make[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 84%] Built target value make[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/analysis.dir/build.make tools/mesh/CMakeFiles/analysis.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/similarity.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/similarity.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/similarity.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/similarity.dir/depend.internal". Scanning dependencies of target similarity make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/similarity.dir/build.make tools/mesh/CMakeFiles/similarity.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/analysis.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/analysis.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/analysis.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/analysis.dir/depend.internal". Scanning dependencies of target analysis make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/analysis.dir/build.make tools/mesh/CMakeFiles/analysis.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 55%] Building C object tools/python/CMakeFiles/_apbslib.dir/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python && /usr/bin/gcc -D_apbslib_EXPORTS -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -I/usr/include/python3.9 -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/_apbslib.dir/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c: In function 'getPotentials': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:3230:12: warning: unused variable 'rc' [-Wunused-variable] 3230 | int i, rc, nx, ny, nz; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c: In function 'getForces': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:3284:31: warning: unused variable 'npholder' [-Wunused-variable] 3284 | PyObject *npvalues, *np, *npholder; | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:3284:26: warning: unused variable 'np' [-Wunused-variable] 3284 | PyObject *npvalues, *np, *npholder; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:3284:15: warning: unused variable 'npvalues' [-Wunused-variable] 3284 | PyObject *npvalues, *np, *npholder; | ^~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:2695: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:2695: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:2695: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' parm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:2695: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 85%] Building C object tools/mesh/CMakeFiles/multivalue.dir/multivalue.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -o CMakeFiles/multivalue.dir/multivalue.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/multivalue.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/multivalue.c:46: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/multivalue.c:46: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/multivalue.c:46: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/multivalue.c:46: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 90%] Linking C executable ../bin/multivalue cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/multivalue.dir/link.txt --verbose=1 /usr/bin/gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/multivalue.dir/multivalue.c.o -o ../bin/multivalue ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 88%] Building C object tools/mesh/CMakeFiles/analysis.dir/analysis.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -o CMakeFiles/analysis.dir/analysis.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:14: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:14: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:14: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:14: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:504, from /usr/include/maloc/maloc_base.h:82, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:14: In function 'strncpy', inlined from 'main' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:123:13: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 1024 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:133:13: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 1024 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:292:5: warning: 'minG2pt[2]' may be used uninitialized in this function [-Wmaybe-uninitialized] 292 | Vnm_print(1, "Min gradient-squared value location = (%4.3f, %4.3f, %4.3f)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 | minG2pt[0], minG2pt[1], minG2pt[2]); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:292:5: warning: 'minG2pt[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:292:5: warning: 'minG2pt[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:284:5: warning: 'minSpt[2]' may be used uninitialized in this function [-Wmaybe-uninitialized] 284 | Vnm_print(1, "Min scalar value location = (%4.3f, %4.3f, %4.3f)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 | minSpt[0], minSpt[1], minSpt[2]); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:284:5: warning: 'minSpt[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:284:5: warning: 'minSpt[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:288:5: warning: 'maxG2pt[2]' may be used uninitialized in this function [-Wmaybe-uninitialized] 288 | Vnm_print(1, "Max gradient-squared value location = (%4.3f, %4.3f, %4.3f)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 | maxG2pt[0], maxG2pt[1], maxG2pt[2]); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:280:5: warning: 'maxSpt[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] 280 | Vnm_print(1, "Max scalar value location = (%4.3f, %4.3f, %4.3f)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 | maxSpt[0], maxSpt[1], maxSpt[2]); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:288:5: warning: 'maxG2pt[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] 288 | Vnm_print(1, "Max gradient-squared value location = (%4.3f, %4.3f, %4.3f)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 | maxG2pt[0], maxG2pt[1], maxG2pt[2]); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:288:5: warning: 'maxG2pt[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:280:5: warning: 'maxSpt[2]' may be used uninitialized in this function [-Wmaybe-uninitialized] 280 | Vnm_print(1, "Max scalar value location = (%4.3f, %4.3f, %4.3f)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 | maxSpt[0], maxSpt[1], maxSpt[2]); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:280:5: warning: 'maxSpt[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:290:5: warning: 'minG2' may be used uninitialized in this function [-Wmaybe-uninitialized] 290 | Vnm_print(1, "Min gradient-squared value = %1.12E\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 | minG2); | ~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:286:5: warning: 'maxG2' may be used uninitialized in this function [-Wmaybe-uninitialized] 286 | Vnm_print(1, "Max gradient-squared value = %1.12E\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 | maxG2); | ~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:278:5: warning: 'maxS' may be used uninitialized in this function [-Wmaybe-uninitialized] 278 | Vnm_print(1, "Max scalar value = %1.12E\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 | maxS); | ~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:182:14: warning: 'format' may be used uninitialized in this function [-Wmaybe-uninitialized] 182 | if (!readGrid(&mask, maskPath, format)) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 90%] Built target multivalue make[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/dx2uhbd.dir/build.make tools/mesh/CMakeFiles/dx2uhbd.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/dx2uhbd.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/dx2uhbd.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/dx2uhbd.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/dx2uhbd.dir/depend.internal". Scanning dependencies of target dx2uhbd make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/dx2uhbd.dir/build.make tools/mesh/CMakeFiles/dx2uhbd.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 87%] Building C object tools/mesh/CMakeFiles/similarity.dir/similarity.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -o CMakeFiles/similarity.dir/similarity.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/similarity.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/similarity.c:13: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/similarity.c:13: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/similarity.c:13: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/similarity.c:13: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:504, from /usr/include/maloc/maloc_base.h:82, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/similarity.c:13: In function 'strncpy', inlined from 'main' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/similarity.c:298:13: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 1024 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/similarity.c:305:13: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 1024 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/similarity.c:312:13: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 1024 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/similarity.c:322:13: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 1024 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/similarity.c:329:13: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 1024 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/similarity.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/similarity.c:452:14: warning: 'format' may be used uninitialized in this function [-Wmaybe-uninitialized] 452 | if (!readGrid(&mask2, mask2Path, format)) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 91%] Linking C executable ../bin/analysis cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysis.dir/link.txt --verbose=1 /usr/bin/gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/analysis.dir/analysis.c.o -o ../bin/analysis ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 94%] Built target analysis make[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/manip/CMakeFiles/born.dir/build.make tools/manip/CMakeFiles/born.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/CMakeFiles/born.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/CMakeFiles/born.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/CMakeFiles/born.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/CMakeFiles/born.dir/depend.internal". Scanning dependencies of target born make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/manip/CMakeFiles/born.dir/build.make tools/manip/CMakeFiles/born.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 94%] Linking C executable ../bin/similarity cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/similarity.dir/link.txt --verbose=1 /usr/bin/gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/similarity.dir/similarity.c.o -o ../bin/similarity ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 89%] Linking C shared library ../../lib/_apbslib.so cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/_apbslib.dir/link.txt --verbose=1 /usr/bin/gcc -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,_apbslib.so -o ../../lib/_apbslib.so CMakeFiles/_apbslib.dir/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/nosh.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/mgparm.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/femparm.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/pbamparm.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/pbsamparm.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/bemparm.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/geoflowparm.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/apolparm.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/vacc.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/valist.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/vatom.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/vpbe.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/vcap.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/vclist.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/vstring.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/vparam.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/vgreen.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/buildPd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/mgcsd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/mgsubd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/mikpckd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/mypdec.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/newtond.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/newdrvd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/powerd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/smoothd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/mgfasd.c.o ../../src/mg/CMakeFiles/apbs_mg.dir/vgrid.c.o ../../src/mg/CMakeFiles/apbs_mg.dir/vmgrid.c.o ../../src/mg/CMakeFiles/apbs_mg.dir/vopot.c.o ../../src/mg/CMakeFiles/apbs_mg.dir/vpmg.c.o ../../src/mg/CMakeFiles/apbs_mg.dir/vpmgp.c.o ../../src/CMakeFiles/apbs_routines.dir/routines.c.o -lm -lstdc++ -lmaloc -fopenmp /usr/lib64/libpython3.9.so cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python && /usr/bin/cmake -E copy /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python/apbslib.py /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/../pdb2pqr/pdb2pka cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python && /usr/bin/cmake -E copy /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/lib/_apbslib.so /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/../pdb2pqr/pdb2pka make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 95%] Built target similarity make[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/manip/CMakeFiles/coulomb.dir/build.make tools/manip/CMakeFiles/coulomb.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 92%] Building C object tools/mesh/CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -o CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2uhbd.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2uhbd.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2uhbd.c:25:10: warning: unused variable 'avg' [-Wunused-variable] 25 | double avg; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2uhbd.c:24:19: warning: unused variable 'k' [-Wunused-variable] 24 | size_t u, i, j, k, nx, ny, nz; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2uhbd.c:24:16: warning: unused variable 'j' [-Wunused-variable] 24 | size_t u, i, j, k, nx, ny, nz; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2uhbd.c:24:13: warning: unused variable 'i' [-Wunused-variable] 24 | size_t u, i, j, k, nx, ny, nz; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2uhbd.c:24:10: warning: unused variable 'u' [-Wunused-variable] 24 | size_t u, i, j, k, nx, ny, nz; | ^ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2uhbd.c:17: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2uhbd.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2uhbd.c:17: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2uhbd.c:17: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2uhbd.c:17: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ make[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 95%] Built target _apbslib make[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/CMakeFiles/coulomb.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/CMakeFiles/coulomb.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/CMakeFiles/coulomb.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/CMakeFiles/coulomb.dir/depend.internal". Scanning dependencies of target coulomb make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/manip/CMakeFiles/coulomb.dir/build.make tools/manip/CMakeFiles/coulomb.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 96%] Linking C executable ../bin/dx2uhbd cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/dx2uhbd.dir/link.txt --verbose=1 /usr/bin/gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o -o ../bin/dx2uhbd ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 97%] Built target dx2uhbd make[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 95%] Building C object tools/manip/CMakeFiles/born.dir/born.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -o CMakeFiles/born.dir/born.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/born.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/born.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/born.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/born.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/born.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 97%] Building C object tools/manip/CMakeFiles/coulomb.dir/coulomb.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -o CMakeFiles/coulomb.dir/coulomb.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/coulomb.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/coulomb.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/coulomb.c:20:12: warning: unused variable 'j' [-Wunused-variable] 20 | int i, j; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/coulomb.c:18:34: warning: unused variable 'disp' [-Wunused-variable] 18 | double *pos, energy, zmagic, disp[3], force[3]; | ^~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/coulomb.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/coulomb.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/coulomb.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/coulomb.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/coulomb.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 98%] Linking C executable ../bin/born cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip && /usr/bin/cmake -E cmake_link_script CMakeFiles/born.dir/link.txt --verbose=1 /usr/bin/gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/born.dir/born.c.o -o ../bin/born ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [100%] Built target born make[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [100%] Linking C executable ../bin/coulomb cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip && /usr/bin/cmake -E cmake_link_script CMakeFiles/coulomb.dir/link.txt --verbose=1 /usr/bin/gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/coulomb.dir/coulomb.c.o -o ../bin/coulomb ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [100%] Built target coulomb make[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/CMakeFiles 0 + popd ~/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.qokiZ3 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64 ++ dirname /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64 + cd apbs-pdb2pqr-vAPBS-3.0.0 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64 'INSTALL=/usr/bin/install -p' -C apbs make: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/cmake -S/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs -B/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/CMakeFiles /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f src/mg/CMakeFiles/apbs_mg.dir/build.make src/mg/CMakeFiles/apbs_mg.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/CMakeFiles/apbs_mg.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f src/mg/CMakeFiles/apbs_mg.dir/build.make src/mg/CMakeFiles/apbs_mg.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Nothing to be done for 'src/mg/CMakeFiles/apbs_mg.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 5%] Built target apbs_mg /usr/bin/make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/CMakeFiles/apbs_generic.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Nothing to be done for 'src/generic/CMakeFiles/apbs_generic.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 27%] Built target apbs_generic /usr/bin/make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/CMakeFiles/apbs_pmgc.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Nothing to be done for 'src/pmgc/CMakeFiles/apbs_pmgc.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 48%] Built target apbs_pmgc /usr/bin/make -f src/CMakeFiles/apbs.dir/build.make src/CMakeFiles/apbs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/CMakeFiles/apbs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f src/CMakeFiles/apbs.dir/build.make src/CMakeFiles/apbs.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Nothing to be done for 'src/CMakeFiles/apbs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 49%] Built target apbs /usr/bin/make -f src/CMakeFiles/apbs-bin.dir/build.make src/CMakeFiles/apbs-bin.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/CMakeFiles/apbs-bin.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f src/CMakeFiles/apbs-bin.dir/build.make src/CMakeFiles/apbs-bin.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Nothing to be done for 'src/CMakeFiles/apbs-bin.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 52%] Built target apbs-bin /usr/bin/make -f src/CMakeFiles/apbs_routines.dir/build.make src/CMakeFiles/apbs_routines.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/CMakeFiles/apbs_routines.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f src/CMakeFiles/apbs_routines.dir/build.make src/CMakeFiles/apbs_routines.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Nothing to be done for 'src/CMakeFiles/apbs_routines.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 54%] Built target apbs_routines /usr/bin/make -f tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build.make tools/mesh/CMakeFiles/uhbd_asc2bin.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/uhbd_asc2bin.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build.make tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 56%] Built target uhbd_asc2bin /usr/bin/make -f tools/mesh/CMakeFiles/tensor2dx.dir/build.make tools/mesh/CMakeFiles/tensor2dx.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/tensor2dx.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/tensor2dx.dir/build.make tools/mesh/CMakeFiles/tensor2dx.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/tensor2dx.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 58%] Built target tensor2dx /usr/bin/make -f tools/mesh/CMakeFiles/mgmesh.dir/build.make tools/mesh/CMakeFiles/mgmesh.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/mgmesh.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/mgmesh.dir/build.make tools/mesh/CMakeFiles/mgmesh.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/mgmesh.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 61%] Built target mgmesh /usr/bin/make -f tools/mesh/CMakeFiles/mergedx.dir/build.make tools/mesh/CMakeFiles/mergedx.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/mergedx.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/mergedx.dir/build.make tools/mesh/CMakeFiles/mergedx.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/mergedx.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 63%] Built target mergedx /usr/bin/make -f tools/mesh/CMakeFiles/del2dx.dir/build.make tools/mesh/CMakeFiles/del2dx.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/del2dx.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/del2dx.dir/build.make tools/mesh/CMakeFiles/del2dx.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/del2dx.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 65%] Built target del2dx /usr/bin/make -f tools/mesh/CMakeFiles/smooth.dir/build.make tools/mesh/CMakeFiles/smooth.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/smooth.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/smooth.dir/build.make tools/mesh/CMakeFiles/smooth.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/smooth.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 68%] Built target smooth /usr/bin/make -f tools/mesh/CMakeFiles/dxmath.dir/build.make tools/mesh/CMakeFiles/dxmath.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/dxmath.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/dxmath.dir/build.make tools/mesh/CMakeFiles/dxmath.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/dxmath.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 70%] Built target dxmath /usr/bin/make -f tools/mesh/CMakeFiles/mergedx2.dir/build.make tools/mesh/CMakeFiles/mergedx2.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/mergedx2.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/mergedx2.dir/build.make tools/mesh/CMakeFiles/mergedx2.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/mergedx2.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 72%] Built target mergedx2 /usr/bin/make -f tools/mesh/CMakeFiles/benchmark.dir/build.make tools/mesh/CMakeFiles/benchmark.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/benchmark.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/benchmark.dir/build.make tools/mesh/CMakeFiles/benchmark.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/benchmark.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 75%] Built target benchmark /usr/bin/make -f tools/mesh/CMakeFiles/dx2mol.dir/build.make tools/mesh/CMakeFiles/dx2mol.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/dx2mol.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/dx2mol.dir/build.make tools/mesh/CMakeFiles/dx2mol.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/dx2mol.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 77%] Built target dx2mol /usr/bin/make -f tools/mesh/CMakeFiles/value.dir/build.make tools/mesh/CMakeFiles/value.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/value.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/value.dir/build.make tools/mesh/CMakeFiles/value.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/value.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 80%] Built target value /usr/bin/make -f tools/mesh/CMakeFiles/multivalue.dir/build.make tools/mesh/CMakeFiles/multivalue.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/multivalue.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/multivalue.dir/build.make tools/mesh/CMakeFiles/multivalue.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/multivalue.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 82%] Built target multivalue /usr/bin/make -f tools/mesh/CMakeFiles/similarity.dir/build.make tools/mesh/CMakeFiles/similarity.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/similarity.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/similarity.dir/build.make tools/mesh/CMakeFiles/similarity.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/similarity.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 84%] Built target similarity /usr/bin/make -f tools/mesh/CMakeFiles/analysis.dir/build.make tools/mesh/CMakeFiles/analysis.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/analysis.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/analysis.dir/build.make tools/mesh/CMakeFiles/analysis.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/analysis.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 87%] Built target analysis /usr/bin/make -f tools/mesh/CMakeFiles/dx2uhbd.dir/build.make tools/mesh/CMakeFiles/dx2uhbd.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/CMakeFiles/dx2uhbd.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/dx2uhbd.dir/build.make tools/mesh/CMakeFiles/dx2uhbd.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/dx2uhbd.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 89%] Built target dx2uhbd /usr/bin/make -f tools/manip/CMakeFiles/born.dir/build.make tools/manip/CMakeFiles/born.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/CMakeFiles/born.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/manip/CMakeFiles/born.dir/build.make tools/manip/CMakeFiles/born.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Nothing to be done for 'tools/manip/CMakeFiles/born.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 91%] Built target born /usr/bin/make -f tools/manip/CMakeFiles/coulomb.dir/build.make tools/manip/CMakeFiles/coulomb.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/CMakeFiles/coulomb.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/manip/CMakeFiles/coulomb.dir/build.make tools/manip/CMakeFiles/coulomb.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Nothing to be done for 'tools/manip/CMakeFiles/coulomb.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 94%] Built target coulomb /usr/bin/make -f tools/python/CMakeFiles/apbslib_swig_compilation.dir/build.make tools/python/CMakeFiles/apbslib_swig_compilation.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python/CMakeFiles/apbslib_swig_compilation.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/python/CMakeFiles/apbslib_swig_compilation.dir/build.make tools/python/CMakeFiles/apbslib_swig_compilation.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Nothing to be done for 'tools/python/CMakeFiles/apbslib_swig_compilation.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 95%] Built target apbslib_swig_compilation /usr/bin/make -f tools/python/CMakeFiles/_apbslib.dir/build.make tools/python/CMakeFiles/_apbslib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python/CMakeFiles/_apbslib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f tools/python/CMakeFiles/_apbslib.dir/build.make tools/python/CMakeFiles/_apbslib.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Nothing to be done for 'tools/python/CMakeFiles/_apbslib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [ 97%] Built target _apbslib /usr/bin/make -f contrib/iapbs/src/CMakeFiles/iapbs.dir/build.make contrib/iapbs/src/CMakeFiles/iapbs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/CMakeFiles/iapbs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/make -f contrib/iapbs/src/CMakeFiles/iapbs.dir/build.make contrib/iapbs/src/CMakeFiles/iapbs.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[2]: Nothing to be done for 'contrib/iapbs/src/CMakeFiles/iapbs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' [100%] Built target iapbs make[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/lib64/libapbs.so.1 -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/lib64/libapbs.so -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/apbscfg.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/apbs.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/routines.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/generic/nosh.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/generic/mgparm.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/generic/femparm.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/generic/pbamparm.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/generic/pbsamparm.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/generic/pbeparm.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/generic/bemparm.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/generic/geoflowparm.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/generic/apolparm.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/generic/vacc.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/generic/valist.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/generic/vatom.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/generic/vpbe.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/generic/vcap.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/generic/vclist.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/generic/vstring.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/generic/vparam.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/generic/vgreen.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/generic/vmatrix.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/generic/vhal.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/generic/vunit.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/pmgc/buildAd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/pmgc/buildBd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/pmgc/buildGd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/pmgc/buildPd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/pmgc/cgd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/pmgc/gsd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/pmgc/matvecd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/pmgc/mgcsd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/pmgc/mgdrvd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/pmgc/mgsubd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/pmgc/mikpckd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/pmgc/mlinpckd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/pmgc/mypdec.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/pmgc/newtond.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/pmgc/newdrvd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/pmgc/powerd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/pmgc/smoothd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/pmgc/mgfasd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/mg/vgrid.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/mg/vmgrid.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/mg/vopot.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/mg/vpmg.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/apbs/mg/vpmgp.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/mgmesh -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/smooth -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/dxmath -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/mergedx -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/mergedx2 -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/value -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/multivalue -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/benchmark -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/similarity -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/analysis -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/dx2mol -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/dx2uhbd -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/del2dx -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/tensor2dx -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/uhbd_asc2bin -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/coulomb -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/born -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/lib/libiapbs.a -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/include/iapbs/apbs_driver.h make: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs' + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/coulomb + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/coulomb /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-coulomb + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/coulomb + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/born + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/born /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-born + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/born + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/mgmesh + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/mgmesh /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-mgmesh + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/mgmesh + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/dxmath + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/dxmath /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-dxmath + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/dxmath + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/mergedx2 + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/mergedx2 /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-mergedx2 + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/mergedx2 + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/mergedx + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/mergedx /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-mergedx + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/mergedx + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/value + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/value /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-value + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/value + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/uhbd_asc2bin + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/uhbd_asc2bin /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-uhbd_asc2bin + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/uhbd_asc2bin + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/smooth + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/smooth /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-smooth + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/smooth + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/dx2mol + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/dx2mol /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-dx2mol + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/dx2mol + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/dx2uhbd + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/dx2uhbd /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-dx2uhbd + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/dx2uhbd + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/similarity + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/similarity /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-similarity + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/similarity + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/multivalue + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/multivalue /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-multivalue + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/multivalue + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/benchmark + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/benchmark /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-benchmark + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/benchmark + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/analysis + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/analysis /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-analysis + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/analysis + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/del2dx + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/del2dx /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-del2dx + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/del2dx + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/tensor2dx + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/tensor2dx /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-tensor2dx + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/tensor2dx + mkdir -p /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/lib64/python3.9/site-packages/apbs + install -pm 755 apbs/tools/manip/psize.py /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/lib64/python3.9/site-packages/apbs/ + pathfix.py -pn -i /usr/bin/python3 /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/lib64/python3.9/site-packages/apbs/psize.py /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/lib64/python3.9/site-packages/apbs/psize.py: updating + ln -s /usr/lib64/python3.9/site-packages/apbs/psize.py /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-psize.py + install -pm 755 apbs/lib/_apbslib.so /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/lib64/python3.9/site-packages/apbs/ ++ find /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64 -type f '(' -name '*.a' ')' + for i in `find /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64 -type f \( -name "*.a" \)` + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/lib/libiapbs.a + /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m -i --build-id-seed 3.0.0-1.fc33 --unique-debug-suffix -3.0.0-1.fc33.riscv64 --unique-debug-src-base apbs-3.0.0-1.fc33.riscv64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-analysis explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-benchmark explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-born extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-born extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-benchmark extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-analysis explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-del2dx explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-coulomb extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-coulomb extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-del2dx explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-dx2mol extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-dx2mol explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-dx2uhbd extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-dx2uhbd explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-dxmath extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-dxmath explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-mergedx extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-mergedx explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-mgmesh explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-mergedx2 extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-mgmesh extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-mergedx2 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-multivalue extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-multivalue explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-similarity explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-smooth extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-smooth extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-similarity explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-tensor2dx extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-tensor2dx explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-uhbd_asc2bin extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-uhbd_asc2bin explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-value explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/lib64/libapbs.so.1 extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/bin/apbs-value extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/lib64/libapbs.so.1 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/lib64/python3.9/site-packages/apbs/_apbslib.so extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/lib64/python3.9/site-packages/apbs/_apbslib.so original debug info size: 5444kB, size after compression: 5084kB /usr/lib/rpm/sepdebugcrcfix: Updated 20 CRC32s, 0 CRC32s did match. 5150 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-python-bytecompile /usr/bin/python 1 0 Bytecompiling .py files below /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/lib/debug/usr/lib64/python3.9 using /usr/bin/python3.9 Bytecompiling .py files below /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/lib64/python3.9 using /usr/bin/python3.9 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Processing files: apbs-3.0.0-1.fc33.riscv64 Provides: apbs = 3.0.0-1.fc33 apbs(riscv-64) = 3.0.0-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libapbs.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libmaloc.so.1()(64bit) rtld(GNU_HASH) Processing files: apbs-tools-3.0.0-1.fc33.riscv64 warning: absolute symlink: /usr/bin/apbs-psize.py -> /usr/lib64/python3.9/site-packages/apbs/psize.py Provides: apbs-tools = 3.0.0-1.fc33 apbs-tools(riscv-64) = 3.0.0-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libapbs.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libmaloc.so.1()(64bit) libpthread.so.0()(64bit) rtld(GNU_HASH) Processing files: apbs-libs-3.0.0-1.fc33.riscv64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.IsODD5 + umask 022 + cd /builddir/build/BUILD + cd apbs-pdb2pqr-vAPBS-3.0.0 + DOCDIR=/builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/share/doc/apbs-libs + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/share/doc/apbs-libs + cp -pr apbs/README.md /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/share/doc/apbs-libs + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.S2pzc6 + umask 022 + cd /builddir/build/BUILD + cd apbs-pdb2pqr-vAPBS-3.0.0 + LICENSEDIR=/builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/share/licenses/apbs-libs + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/share/licenses/apbs-libs + cp -pr apbs/LICENSE.md /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/share/licenses/apbs-libs + cp -pr apbs/COPYING /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/share/licenses/apbs-libs + cp -pr apbs/contrib/iapbs/iapbs-COPYING /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/share/licenses/apbs-libs + cp -pr apbs/contrib/iapbs/iapbs-LGPLv2 /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/share/licenses/apbs-libs + RPM_EC=0 ++ jobs -p + exit 0 Provides: apbs-libs = 3.0.0-1.fc33 apbs-libs(riscv-64) = 3.0.0-1.fc33 libapbs.so.1()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/python3 ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libmaloc.so.1()(64bit) libpython3.9.so.1.0()(64bit) python(abi) = 3.9 rtld(GNU_HASH) Processing files: apbs-devel-3.0.0-1.fc33.riscv64 Provides: apbs-devel = 3.0.0-1.fc33 apbs-devel(riscv-64) = 3.0.0-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libapbs.so.1()(64bit) Processing files: apbs-doc-3.0.0-1.fc33.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.jOd7M3 + umask 022 + cd /builddir/build/BUILD + cd apbs-pdb2pqr-vAPBS-3.0.0 + DOCDIR=/builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/share/doc/apbs-doc + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/share/doc/apbs-doc + cp -pr doc/_build/html /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/share/doc/apbs-doc + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.J6IMv4 + umask 022 + cd /builddir/build/BUILD + cd apbs-pdb2pqr-vAPBS-3.0.0 + LICENSEDIR=/builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/share/licenses/apbs-doc + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/share/licenses/apbs-doc + cp -pr doc/apbs/license.rst /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64/usr/share/licenses/apbs-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: apbs-doc = 3.0.0-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: apbs-debugsource-3.0.0-1.fc33.riscv64 Provides: apbs-debugsource = 3.0.0-1.fc33 apbs-debugsource(riscv-64) = 3.0.0-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: apbs-debuginfo-3.0.0-1.fc33.riscv64 Provides: apbs-debuginfo = 3.0.0-1.fc33 apbs-debuginfo(riscv-64) = 3.0.0-1.fc33 debuginfo(build-id) = fd8603160f0e562acb410612965abd18fd809bd9 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: apbs-debugsource(riscv-64) = 3.0.0-1.fc33 Processing files: apbs-tools-debuginfo-3.0.0-1.fc33.riscv64 Provides: apbs-tools-debuginfo = 3.0.0-1.fc33 apbs-tools-debuginfo(riscv-64) = 3.0.0-1.fc33 debuginfo(build-id) = 0e1ff5212ae0968426c5bc918c87aa49eee7fba9 debuginfo(build-id) = 1c6f0b9b9a52ef4ee7527154003d964ac00983ad debuginfo(build-id) = 35cb31d8c433c71cf3d9bd9fea3586b255ef5579 debuginfo(build-id) = 421b89b5f3a6ccf9ef16d5b0b7d12900792cbeeb debuginfo(build-id) = 61fa025c39ae0f27af2c47a8b5b76777b637075f debuginfo(build-id) = 6f9f50d10ab07c0779b0ef21fc4e8edfefec957a debuginfo(build-id) = 850b4fc3bc1cf1e775024df67ecbdb2222a9b459 debuginfo(build-id) = 8859737b0312ead30835d5f69477501cb2644413 debuginfo(build-id) = a93ad4360eb24de2f38d2c84d5084a96aacb083d debuginfo(build-id) = c4126080735b67260c5868b574ebf50c072eceb2 debuginfo(build-id) = ce54668c944653c3aa2accea8bdb2a9dacf73b03 debuginfo(build-id) = d5c3004510ec398106112d09fae38d45ff7615b3 debuginfo(build-id) = eb82c5a2e19e7b18e739cda73d933758517e04cf debuginfo(build-id) = ed58b30a04288099863101a989c09b1cda4db9b6 debuginfo(build-id) = f2732e12f9c037eb8b55ca3727ad4cdd88fd4425 debuginfo(build-id) = f2b59ae69f1688eb5e6ad34ebb884b475cb543f7 debuginfo(build-id) = f7b374beae6b35a6c9c8e573ccaa2bf2e6ed3d5e Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: apbs-debugsource(riscv-64) = 3.0.0-1.fc33 Processing files: apbs-libs-debuginfo-3.0.0-1.fc33.riscv64 Provides: apbs-libs-debuginfo = 3.0.0-1.fc33 apbs-libs-debuginfo(riscv-64) = 3.0.0-1.fc33 debuginfo(build-id) = 328f497063beefdee689a7707b618671d133d431 debuginfo(build-id) = dd2546d0ab98a4e71ab83a537ce4115109caad8e Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: apbs-debugsource(riscv-64) = 3.0.0-1.fc33 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64 Wrote: /builddir/build/RPMS/apbs-libs-3.0.0-1.fc33.riscv64.rpm Wrote: /builddir/build/RPMS/apbs-devel-3.0.0-1.fc33.riscv64.rpm Wrote: /builddir/build/RPMS/apbs-tools-debuginfo-3.0.0-1.fc33.riscv64.rpm Wrote: /builddir/build/RPMS/apbs-libs-debuginfo-3.0.0-1.fc33.riscv64.rpm Wrote: /builddir/build/RPMS/apbs-debuginfo-3.0.0-1.fc33.riscv64.rpm Wrote: /builddir/build/RPMS/apbs-debugsource-3.0.0-1.fc33.riscv64.rpm Wrote: /builddir/build/RPMS/apbs-tools-3.0.0-1.fc33.riscv64.rpm Wrote: /builddir/build/RPMS/apbs-3.0.0-1.fc33.riscv64.rpm Wrote: /builddir/build/RPMS/apbs-doc-3.0.0-1.fc33.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.4VjM12 + umask 022 + cd /builddir/build/BUILD + cd apbs-pdb2pqr-vAPBS-3.0.0 + /usr/bin/rm -rf /builddir/build/BUILDROOT/apbs-3.0.0-1.fc33.riscv64 + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0