Mock Version: 1.4.9 Mock Version: 1.4.9 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/R.spec'], chrootPath='/var/lib/mock/f29-build-25067-13064/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'}shell=Falselogger=timeout=345600uid=995gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/R.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'} and shell False Building target platforms: riscv64 Building for target riscv64 Wrote: /builddir/build/SRPMS/R-3.5.0-6.fc29.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/R.spec'], chrootPath='/var/lib/mock/f29-build-25067-13064/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'}shell=Falselogger=timeout=345600uid=995gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/R.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'} and shell False Building target platforms: riscv64 Building for target riscv64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.UFwuzd + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf R-3.5.0 + /usr/bin/gzip -dc /builddir/build/SOURCES/R-3.5.0.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd R-3.5.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . Patch #1 (R-3.3.0-fix-java_path-in-javareconf.patch): + echo 'Patch #1 (R-3.3.0-fix-java_path-in-javareconf.patch):' + /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .fixpath --fuzz=0 patching file src/scripts/javareconf.in Hunk #1 succeeded at 79 (offset 1 line). + cat + chmod +x /builddir/build/BUILD/R-3.5.0/R-prov + cat + chmod +x /builddir/build/BUILD/R-3.5.0/R-req + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.WqVh2g + umask 022 + cd /builddir/build/BUILD + cd R-3.5.0 + echo 'R_LIBS_SITE=${R_LIBS_SITE-'\''/usr/local/lib/R/site-library:/usr/local/lib/R/library:/usr/lib64/R/library:/usr/share/R/library'\''}' + export R_PDFVIEWER=/usr/bin/xdg-open + R_PDFVIEWER=/usr/bin/xdg-open + export R_PRINTCMD=lpr + R_PRINTCMD=lpr + export R_BROWSER=/usr/bin/xdg-open + R_BROWSER=/usr/bin/xdg-open + case "riscv64" in + export CC=gcc + CC=gcc + export CXX=g++ + CXX=g++ + export F77=gfortran + F77=gfortran + export FC=gfortran + FC=gfortran + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + '[' 1 = 1 ']' BUILDSTDERR: +++ dirname ./configure BUILDSTDERR: ++ find . -name config.guess -o -name config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) BUILDSTDERR: ++ basename ./tools/config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./tools/config.sub BUILDSTDERR: ++ basename ./tools/config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./tools/config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) BUILDSTDERR: ++ basename ./tools/config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./tools/config.guess BUILDSTDERR: ++ basename ./tools/config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./tools/config.guess + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' BUILDSTDERR: ++ find . -name ltmain.sh + for i in $(find . -name ltmain.sh) + /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./tools/ltmain.sh + ./configure --build=riscv64-koji-linux-gnu --host=riscv64-koji-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-system-tre --with-system-valgrind-headers --with-lapack --with-tcl-config=/usr/lib64/tclConfig.sh --with-tk-config=/usr/lib64/tkConfig.sh --enable-BLAS-shlib --enable-R-shlib --enable-prebuilt-html MAKEINFO=texi2any rdocdir=/usr/share/doc/R rincludedir=/usr/include/R rsharedir=/usr/share/R BUILDSTDERR: configure: WARNING: unrecognized options: --disable-dependency-tracking BUILDSTDERR: ./configure: line 25573: cd: /lib64/lp64d/../lib64/lp64d: No such file or directory BUILDSTDERR: ./configure: line 25573: cd: /usr/lib64/lp64d/../lib64/lp64d: No such file or directory BUILDSTDERR: ./configure: line 25601: cd: /lib64/lp64d/../lib64/lp64d: No such file or directory BUILDSTDERR: ./configure: line 25601: cd: /usr/lib64/lp64d/../lib64/lp64d: No such file or directory BUILDSTDERR: ./configure: line 27483: ::: command not found BUILDSTDERR: ./configure: line 46235: cd: /lib64/lp64d/../lib64/lp64d/: No such file or directory BUILDSTDERR: ./configure: line 46235: cd: /usr/lib64/lp64d/../lib64/lp64d/: No such file or directory BUILDSTDERR: configure: WARNING: unrecognized options: --disable-dependency-tracking + cat CONFIGURE.log + grep -A30 'R is now' - + make V=1 make[1]: Entering directory '/builddir/build/BUILD/R-3.5.0/m4' make[1]: Nothing to be done for 'R'. make[1]: Leaving directory '/builddir/build/BUILD/R-3.5.0/m4' make[1]: Entering directory '/builddir/build/BUILD/R-3.5.0/tools' make[1]: Nothing to be done for 'R'. make[1]: Leaving directory '/builddir/build/BUILD/R-3.5.0/tools' make[1]: Entering directory '/builddir/build/BUILD/R-3.5.0/doc' make[2]: Entering directory '/builddir/build/BUILD/R-3.5.0/doc/html' make[2]: Leaving directory '/builddir/build/BUILD/R-3.5.0/doc/html' make[2]: Entering directory '/builddir/build/BUILD/R-3.5.0/doc/manual' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/builddir/build/BUILD/R-3.5.0/doc/manual' make[1]: Leaving directory '/builddir/build/BUILD/R-3.5.0/doc' make[1]: Entering directory '/builddir/build/BUILD/R-3.5.0/etc' make[1]: Leaving directory '/builddir/build/BUILD/R-3.5.0/etc' make[1]: Entering directory '/builddir/build/BUILD/R-3.5.0/share' make[1]: Leaving directory '/builddir/build/BUILD/R-3.5.0/share' make[1]: Entering directory '/builddir/build/BUILD/R-3.5.0/src' make[2]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/scripts' creating src/scripts/R.fe make[3]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/scripts' mkdir -p -- ../../bin make[3]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/scripts' make[2]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/scripts' make[2]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/include' mkdir -p -- ../../include make[3]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/include/R_ext' mkdir -p -- ../../../include/R_ext make[3]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/include/R_ext' make[2]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/include' make[2]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/extra' make[3]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/extra/blas' make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/extra/blas' gfortran -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c blas.f -o blas.o BUILDSTDERR: blas.f:1614:0: BUILDSTDERR: DH22=DH22*GAM BUILDSTDERR: BUILDSTDERR: Warning: 'dh22' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: blas.f:1613:0: BUILDSTDERR: DH21=DH21*GAM BUILDSTDERR: BUILDSTDERR: Warning: 'dh21' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: blas.f:1480:0: BUILDSTDERR: 1 DQ2,DU,DY1,ZERO,GAMSQ,DD1,DFLAG,DH12,DH22,DP1,DQ1, BUILDSTDERR: BUILDSTDERR: Warning: 'dh12' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: blas.f:1590:0: BUILDSTDERR: DH11=DH11*GAM BUILDSTDERR: BUILDSTDERR: Warning: 'dh11' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: blas.f:2409:0: BUILDSTDERR: INTEGER I, INFO, IX, J, JX, K, KK, KX BUILDSTDERR: BUILDSTDERR: Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: blas.f:2618:0: BUILDSTDERR: INTEGER I, INFO, IX, IY, J, JX, JY, K, KK, KX, KY BUILDSTDERR: BUILDSTDERR: Warning: 'ky' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: blas.f:2618:0: Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: blas.f:2618:0: Warning: 'jy' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: blas.f:2618:0: Warning: 'jx' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: blas.f:3451:0: BUILDSTDERR: INTEGER I, INFO, IX, J, JX, KX BUILDSTDERR: BUILDSTDERR: Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: blas.f:3659:0: BUILDSTDERR: INTEGER I, INFO, IX, IY, J, JX, JY, KX, KY BUILDSTDERR: BUILDSTDERR: Warning: 'ky' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: blas.f:3659:0: Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: blas.f:3659:0: Warning: 'jy' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: blas.f:3659:0: Warning: 'jx' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: blas.f:4550:0: BUILDSTDERR: INTEGER I, INFO, IX, J, JX, KPLUS1, KX, L BUILDSTDERR: BUILDSTDERR: Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: blas.f:4896:0: BUILDSTDERR: INTEGER I, INFO, IX, J, JX, KPLUS1, KX, L BUILDSTDERR: BUILDSTDERR: Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: blas.f:5198:0: BUILDSTDERR: INTEGER I, INFO, IX, J, JX, K, KK, KX BUILDSTDERR: BUILDSTDERR: Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: blas.f:5500:0: BUILDSTDERR: INTEGER I, INFO, IX, J, JX, K, KK, KX BUILDSTDERR: BUILDSTDERR: Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: blas.f:6157:0: BUILDSTDERR: INTEGER I, INFO, IX, J, JX, KX BUILDSTDERR: BUILDSTDERR: Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: blas.f:6824:0: BUILDSTDERR: INTEGER I, INFO, IX, J, JX, KX BUILDSTDERR: BUILDSTDERR: Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized] gfortran -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c cmplxblas.f -o cmplxblas.o BUILDSTDERR: cmplxblas.f:4796:26: BUILDSTDERR: RTEMP = RTEMP + DCONJG( A( L, J ) )*A( L, J ) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] BUILDSTDERR: cmplxblas.f:4808:26: BUILDSTDERR: RTEMP = RTEMP + DCONJG( A( L, J ) )*A( L, J ) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] BUILDSTDERR: cmplxblas.f:1130:0: BUILDSTDERR: INTEGER I, INFO, IX, IY, J, JX, JY, KX, KY BUILDSTDERR: BUILDSTDERR: Warning: 'ky' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplxblas.f:1130:0: Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplxblas.f:1130:0: Warning: 'jy' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplxblas.f:1130:0: Warning: 'jx' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplxblas.f:2208:0: BUILDSTDERR: INTEGER I, INFO, IX, J, JX, KX BUILDSTDERR: BUILDSTDERR: Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplxblas.f:2946:0: BUILDSTDERR: INTEGER I, INFO, IX, J, JX, KX BUILDSTDERR: BUILDSTDERR: Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplxblas.f:4386:0: BUILDSTDERR: INTEGER I, INFO, IX, J, JX, KX BUILDSTDERR: BUILDSTDERR: Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplxblas.f:5195:0: BUILDSTDERR: INTEGER I, INFO, IX, J, JX, K, KK, KX BUILDSTDERR: BUILDSTDERR: Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplxblas.f:5423:0: BUILDSTDERR: INTEGER I, INFO, IX, IY, J, JX, JY, K, KK, KX, KY BUILDSTDERR: BUILDSTDERR: Warning: 'ky' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplxblas.f:5423:0: Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplxblas.f:5423:0: Warning: 'jy' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplxblas.f:5423:0: Warning: 'jx' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplxblas.f:6649:0: BUILDSTDERR: INTEGER I, INFO, IX, J, JX, KPLUS1, KX, L BUILDSTDERR: BUILDSTDERR: Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplxblas.f:7030:0: BUILDSTDERR: INTEGER I, INFO, IX, J, JX, KPLUS1, KX, L BUILDSTDERR: BUILDSTDERR: Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplxblas.f:7367:0: BUILDSTDERR: INTEGER I, INFO, IX, J, JX, K, KK, KX BUILDSTDERR: BUILDSTDERR: Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplxblas.f:7708:0: BUILDSTDERR: INTEGER I, INFO, IX, J, JX, K, KK, KX BUILDSTDERR: BUILDSTDERR: Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized] gcc -shared -fopenmp -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o libRblas.so blas.o cmplxblas.o -L -L -lgfortran -lm make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/extra/blas' make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/extra/blas' mkdir -p -- /builddir/build/BUILD/R-3.5.0/lib make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/extra/blas' make[3]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/extra/blas' make[3]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/extra/xdr' making xdr.d from xdr.c making xdr_float.d from xdr_float.c making xdr_mem.d from xdr_mem.c making xdr_stdio.d from xdr_stdio.c make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/extra/xdr' gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fvisibility=hidden -c xdr.c -o xdr.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fvisibility=hidden -c xdr_float.c -o xdr_float.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fvisibility=hidden -c xdr_mem.c -o xdr_mem.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fvisibility=hidden -c xdr_stdio.c -o xdr_stdio.o ar -cr libxdr.a xdr.o xdr_float.o xdr_mem.o xdr_stdio.o ranlib libxdr.a make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/extra/xdr' make[3]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/extra/xdr' make[2]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/extra' make[2]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/appl' making integrate.d from integrate.c making interv.d from interv.c making maxcol.d from maxcol.c making optim.d from optim.c making pretty.d from pretty.c making uncmin.d from uncmin.c make[3]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/appl' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c integrate.c -o integrate.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c interv.c -o interv.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c maxcol.c -o maxcol.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c optim.c -o optim.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pretty.c -o pretty.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c uncmin.c -o uncmin.o gfortran -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c dchdc.f -o dchdc.o gfortran -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c dpbfa.f -o dpbfa.o gfortran -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c dpbsl.f -o dpbsl.o gfortran -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c dpoco.f -o dpoco.o gfortran -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c dpodi.f -o dpodi.o gfortran -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c dpofa.f -o dpofa.o gfortran -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c dposl.f -o dposl.o gfortran -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c dqrdc.f -o dqrdc.o gfortran -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c dqrdc2.f -o dqrdc2.o gfortran -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c dqrls.f -o dqrls.o gfortran -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c dqrsl.f -o dqrsl.o gfortran -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c dqrutl.f -o dqrutl.o gfortran -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c dsvdc.f -o dsvdc.o gfortran -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c dtrco.f -o dtrco.o gfortran -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c dtrsl.f -o dtrsl.o ar -cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o ranlib libappl.a make[3]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/appl' make[2]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/appl' make[2]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/nmath' making mlutils.d from mlutils.c making d1mach.d from d1mach.c making i1mach.d from i1mach.c making fmax2.d from fmax2.c making fmin2.d from fmin2.c making fprec.d from fprec.c making fround.d from fround.c making ftrunc.d from ftrunc.c making sign.d from sign.c making fsign.d from fsign.c making imax2.d from imax2.c making imin2.d from imin2.c making chebyshev.d from chebyshev.c making log1p.d from log1p.c making lgammacor.d from lgammacor.c making gammalims.d from gammalims.c making stirlerr.d from stirlerr.c making bd0.d from bd0.c making gamma.d from gamma.c making lgamma.d from lgamma.c making gamma_cody.d from gamma_cody.c making beta.d from beta.c making lbeta.d from lbeta.c making polygamma.d from polygamma.c making cospi.d from cospi.c making bessel_i.d from bessel_i.c making bessel_j.d from bessel_j.c making bessel_k.d from bessel_k.c making bessel_y.d from bessel_y.c making choose.d from choose.c making snorm.d from snorm.c making sexp.d from sexp.c making dgamma.d from dgamma.c making pgamma.d from pgamma.c making qgamma.d from qgamma.c making rgamma.d from rgamma.c making dbeta.d from dbeta.c making pbeta.d from pbeta.c making qbeta.d from qbeta.c making rbeta.d from rbeta.c making dunif.d from dunif.c making punif.d from punif.c making qunif.d from qunif.c making runif.d from runif.c making dnorm.d from dnorm.c making pnorm.d from pnorm.c making qnorm.d from qnorm.c making rnorm.d from rnorm.c making dlnorm.d from dlnorm.c making plnorm.d from plnorm.c making qlnorm.d from qlnorm.c making rlnorm.d from rlnorm.c making df.d from df.c making pf.d from pf.c making qf.d from qf.c making rf.d from rf.c making dnf.d from dnf.c making dt.d from dt.c making pt.d from pt.c making qt.d from qt.c making rt.d from rt.c making dnt.d from dnt.c making dchisq.d from dchisq.c making pchisq.d from pchisq.c making qchisq.d from qchisq.c making rchisq.d from rchisq.c making rnchisq.d from rnchisq.c making dbinom.d from dbinom.c making pbinom.d from pbinom.c making qbinom.d from qbinom.c making rbinom.d from rbinom.c making rmultinom.d from rmultinom.c making dcauchy.d from dcauchy.c making pcauchy.d from pcauchy.c making qcauchy.d from qcauchy.c making rcauchy.d from rcauchy.c making dexp.d from dexp.c making pexp.d from pexp.c making qexp.d from qexp.c making rexp.d from rexp.c making dgeom.d from dgeom.c making pgeom.d from pgeom.c making qgeom.d from qgeom.c making rgeom.d from rgeom.c making dhyper.d from dhyper.c making phyper.d from phyper.c making qhyper.d from qhyper.c making rhyper.d from rhyper.c making dnbinom.d from dnbinom.c making pnbinom.d from pnbinom.c making qnbinom.d from qnbinom.c making rnbinom.d from rnbinom.c making dpois.d from dpois.c making ppois.d from ppois.c making qpois.d from qpois.c making rpois.d from rpois.c making dweibull.d from dweibull.c making pweibull.d from pweibull.c making qweibull.d from qweibull.c making rweibull.d from rweibull.c making dlogis.d from dlogis.c making plogis.d from plogis.c making qlogis.d from qlogis.c making rlogis.d from rlogis.c making dnchisq.d from dnchisq.c making pnchisq.d from pnchisq.c making qnchisq.d from qnchisq.c making dnbeta.d from dnbeta.c making pnbeta.d from pnbeta.c making qnbeta.d from qnbeta.c making pnf.d from pnf.c making pnt.d from pnt.c making qnf.d from qnf.c making qnt.d from qnt.c making ptukey.d from ptukey.c making qtukey.d from qtukey.c making toms708.d from toms708.c making wilcox.d from wilcox.c making signrank.d from signrank.c make[3]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c mlutils.c -o mlutils.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c d1mach.c -o d1mach.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c i1mach.c -o i1mach.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c fmax2.c -o fmax2.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c fmin2.c -o fmin2.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c fprec.c -o fprec.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c fround.c -o fround.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ftrunc.c -o ftrunc.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c sign.c -o sign.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c fsign.c -o fsign.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c imax2.c -o imax2.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c imin2.c -o imin2.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c chebyshev.c -o chebyshev.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c log1p.c -o log1p.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c lgammacor.c -o lgammacor.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c gammalims.c -o gammalims.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c stirlerr.c -o stirlerr.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c bd0.c -o bd0.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c gamma.c -o gamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c lgamma.c -o lgamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c gamma_cody.c -o gamma_cody.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c beta.c -o beta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c lbeta.c -o lbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c polygamma.c -o polygamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c cospi.c -o cospi.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c bessel_i.c -o bessel_i.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c bessel_j.c -o bessel_j.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c bessel_k.c -o bessel_k.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c bessel_y.c -o bessel_y.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c choose.c -o choose.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c snorm.c -o snorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c sexp.c -o sexp.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dgamma.c -o dgamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pgamma.c -o pgamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qgamma.c -o qgamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rgamma.c -o rgamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dbeta.c -o dbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pbeta.c -o pbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qbeta.c -o qbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rbeta.c -o rbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dunif.c -o dunif.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c punif.c -o punif.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qunif.c -o qunif.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c runif.c -o runif.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dnorm.c -o dnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pnorm.c -o pnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qnorm.c -o qnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rnorm.c -o rnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dlnorm.c -o dlnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c plnorm.c -o plnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qlnorm.c -o qlnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rlnorm.c -o rlnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c df.c -o df.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pf.c -o pf.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qf.c -o qf.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rf.c -o rf.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dnf.c -o dnf.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dt.c -o dt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pt.c -o pt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qt.c -o qt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rt.c -o rt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dnt.c -o dnt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dchisq.c -o dchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pchisq.c -o pchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qchisq.c -o qchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rchisq.c -o rchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rnchisq.c -o rnchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dbinom.c -o dbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pbinom.c -o pbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qbinom.c -o qbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rbinom.c -o rbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rmultinom.c -o rmultinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dcauchy.c -o dcauchy.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pcauchy.c -o pcauchy.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qcauchy.c -o qcauchy.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rcauchy.c -o rcauchy.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dexp.c -o dexp.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pexp.c -o pexp.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qexp.c -o qexp.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rexp.c -o rexp.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dgeom.c -o dgeom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pgeom.c -o pgeom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qgeom.c -o qgeom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rgeom.c -o rgeom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dhyper.c -o dhyper.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c phyper.c -o phyper.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qhyper.c -o qhyper.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rhyper.c -o rhyper.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dnbinom.c -o dnbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pnbinom.c -o pnbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qnbinom.c -o qnbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rnbinom.c -o rnbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dpois.c -o dpois.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ppois.c -o ppois.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qpois.c -o qpois.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rpois.c -o rpois.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dweibull.c -o dweibull.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pweibull.c -o pweibull.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qweibull.c -o qweibull.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rweibull.c -o rweibull.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dlogis.c -o dlogis.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c plogis.c -o plogis.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qlogis.c -o qlogis.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rlogis.c -o rlogis.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dnchisq.c -o dnchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pnchisq.c -o pnchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qnchisq.c -o qnchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dnbeta.c -o dnbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pnbeta.c -o pnbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qnbeta.c -o qnbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pnf.c -o pnf.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pnt.c -o pnt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qnf.c -o qnf.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qnt.c -o qnt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ptukey.c -o ptukey.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qtukey.c -o qtukey.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c toms708.c -o toms708.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c wilcox.c -o wilcox.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c signrank.c -o signrank.o ar -cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o ranlib libnmath.a make[3]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/nmath' make[2]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/nmath' make[2]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/unix' config.status: creating src/unix/Makefile making Rembedded.d from Rembedded.c making dynload.d from dynload.c making system.d from system.c making sys-unix.d from sys-unix.c making sys-std.d from sys-std.c making X11.d from X11.c make[3]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/unix' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c Rembedded.c -o Rembedded.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dynload.c -o dynload.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c system.c -o system.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c sys-unix.c -o sys-unix.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c sys-std.c -o sys-std.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c X11.c -o X11.o ar -cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o ranlib libunix.a make[3]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/unix' make[3]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/unix' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -DR_HOME='"/builddir/build/BUILD/R-3.5.0"' \ -o Rscript ./Rscript.c make[3]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/unix' make[2]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/unix' make[2]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/main' config.status: creating src/main/Makefile making CommandLineArgs.d from CommandLineArgs.c making Rdynload.d from Rdynload.c making Renviron.d from Renviron.c making RNG.d from RNG.c making agrep.d from agrep.c making altrep.d from altrep.c making apply.d from apply.c making arithmetic.d from arithmetic.c making array.d from array.c making attrib.d from attrib.c making bind.d from bind.c making builtin.d from builtin.c making character.d from character.c making coerce.d from coerce.c making colors.d from colors.c making complex.d from complex.c making connections.d from connections.c making context.d from context.c making cum.d from cum.c making dcf.d from dcf.c making datetime.d from datetime.c making debug.d from debug.c making deparse.d from deparse.c making devices.d from devices.c making dotcode.d from dotcode.c making dounzip.d from dounzip.c making dstruct.d from dstruct.c making duplicate.d from duplicate.c making edit.d from edit.c making engine.d from engine.c making envir.d from envir.c making errors.d from errors.c making eval.d from eval.c making format.d from format.c making gevents.d from gevents.c making gram.d from gram.c making gram-ex.d from gram-ex.c making graphics.d from graphics.c making grep.d from grep.c making identical.d from identical.c making inlined.d from inlined.c making inspect.d from inspect.c making internet.d from internet.c making iosupport.d from iosupport.c making lapack.d from lapack.c making list.d from list.c making localecharset.d from localecharset.c making logic.d from logic.c making main.d from main.c making mapply.d from mapply.c making match.d from match.c making memory.d from memory.c making names.d from names.c making objects.d from objects.c making options.d from options.c making paste.d from paste.c making platform.d from platform.c making plot.d from plot.c making plot3d.d from plot3d.c making plotmath.d from plotmath.c making print.d from print.c making printarray.d from printarray.c making printvector.d from printvector.c making printutils.d from printutils.c making qsort.d from qsort.c making radixsort.d from radixsort.c making random.d from random.c making raw.d from raw.c making registration.d from registration.c making relop.d from relop.c making rlocale.d from rlocale.c making saveload.d from saveload.c making scan.d from scan.c making seq.d from seq.c making serialize.d from serialize.c making sort.d from sort.c making source.d from source.c making split.d from split.c making sprintf.d from sprintf.c making startup.d from startup.c making subassign.d from subassign.c making subscript.d from subscript.c making subset.d from subset.c making summary.d from summary.c making sysutils.d from sysutils.c making times.d from times.c making unique.d from unique.c making util.d from util.c making version.d from version.c making g_alab_her.d from g_alab_her.c making g_cntrlify.d from g_cntrlify.c making g_fontdb.d from g_fontdb.c making g_her_glyph.d from g_her_glyph.c making Rmain.d from Rmain.c making alloca.d from alloca.c making mkdtemp.d from mkdtemp.c making strdup.d from strdup.c making strncasecmp.d from strncasecmp.c make[3]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c CommandLineArgs.c -o CommandLineArgs.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c Rdynload.c -o Rdynload.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c Renviron.c -o Renviron.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c RNG.c -o RNG.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c agrep.c -o agrep.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c altrep.c -o altrep.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c apply.c -o apply.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c arithmetic.c -o arithmetic.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c array.c -o array.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c attrib.c -o attrib.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c bind.c -o bind.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c builtin.c -o builtin.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c character.c -o character.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c coerce.c -o coerce.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c colors.c -o colors.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c complex.c -o complex.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c connections.c -o connections.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c context.c -o context.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c cum.c -o cum.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dcf.c -o dcf.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c datetime.c -o datetime.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c debug.c -o debug.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c deparse.c -o deparse.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c devices.c -o devices.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dotcode.c -o dotcode.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dounzip.c -o dounzip.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dstruct.c -o dstruct.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c duplicate.c -o duplicate.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c edit.c -o edit.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c engine.c -o engine.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c envir.c -o envir.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c errors.c -o errors.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c eval.c -o eval.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c format.c -o format.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c gevents.c -o gevents.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c gram.c -o gram.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c gram-ex.c -o gram-ex.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c graphics.c -o graphics.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c grep.c -o grep.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c identical.c -o identical.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c inlined.c -o inlined.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c inspect.c -o inspect.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c internet.c -o internet.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c iosupport.c -o iosupport.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c lapack.c -o lapack.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c list.c -o list.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c localecharset.c -o localecharset.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c logic.c -o logic.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c main.c -o main.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c mapply.c -o mapply.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c match.c -o match.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c memory.c -o memory.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c names.c -o names.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c objects.c -o objects.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c options.c -o options.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c paste.c -o paste.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c platform.c -o platform.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c plot.c -o plot.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c plot3d.c -o plot3d.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c plotmath.c -o plotmath.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c print.c -o print.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c printarray.c -o printarray.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c printvector.c -o printvector.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c printutils.c -o printutils.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qsort.c -o qsort.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c radixsort.c -o radixsort.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c random.c -o random.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c raw.c -o raw.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c registration.c -o registration.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c relop.c -o relop.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rlocale.c -o rlocale.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c saveload.c -o saveload.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c scan.c -o scan.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c seq.c -o seq.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c serialize.c -o serialize.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c sort.c -o sort.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c source.c -o source.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c split.c -o split.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c sprintf.c -o sprintf.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c startup.c -o startup.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c subassign.c -o subassign.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c subscript.c -o subscript.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c subset.c -o subset.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c summary.c -o summary.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c sysutils.c -o sysutils.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c times.c -o times.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c unique.c -o unique.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util.c -o util.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c version.c -o version.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c g_alab_her.c -o g_alab_her.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c g_cntrlify.c -o g_cntrlify.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c g_fontdb.c -o g_fontdb.o gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c g_her_glyph.c -o g_her_glyph.o gfortran -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c xxxpr.f -o xxxpr.o gcc -shared -fopenmp -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o altrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o radixsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/xdr/libxdr.a -L"../../lib" -lRblas -L -L -lgfortran -lm -lreadline -ltre -lpcre -llzma -lbz2 -lz -lrt -ldl -lm -licuuc -licui18n make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/main' mkdir -p -- /builddir/build/BUILD/R-3.5.0/bin/exec make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/main' make[3]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/main' make[3]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c Rmain.c -o Rmain.o gcc -Wl,--export-dynamic -fopenmp -L"../../lib" -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o R.bin Rmain.o -lR -lRblas make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/main' make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/main' make[3]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/main' make[2]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/main' make[2]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/modules' make[3]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/modules/internet' making Rhttpd.d from Rhttpd.c making Rsock.d from Rsock.c making internet.d from internet.c making libcurl.d from libcurl.c making nanoftp.d from nanoftp.c making nanohttp.d from nanohttp.c making sock.d from sock.c making sockconn.d from sockconn.c make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/modules/internet' gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fvisibility=hidden -c Rsock.c -o Rsock.o gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fvisibility=hidden -c internet.c -o internet.o gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fvisibility=hidden -c libcurl.c -o libcurl.o gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fvisibility=hidden -c nanoftp.c -o nanoftp.o gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fvisibility=hidden -c nanohttp.c -o nanohttp.o gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fvisibility=hidden -c sock.c -o sock.o gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fvisibility=hidden -c sockconn.c -o sockconn.o gcc -shared -L"../../../lib" -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o nanoftp.o nanohttp.o sock.o sockconn.o -lcurl -lR make[5]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/modules/internet' mkdir -p -- /builddir/build/BUILD/R-3.5.0/modules make[5]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/modules/internet' make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/modules/internet' make[3]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/modules/internet' make[3]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/modules/lapack' making Lapack.d from Lapack.c make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/modules/lapack' gfortran -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c dlamch.f -o dlamch.o gfortran -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c dlapack.f -o dlapack.o BUILDSTDERR: dlapack.f:6871:19: BUILDSTDERR: K = SCALE( I ) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] BUILDSTDERR: dlapack.f:6885:19: BUILDSTDERR: K = SCALE( I ) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] BUILDSTDERR: dlapack.f:9161:21: BUILDSTDERR: HSWORK = WORK( 1 ) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] BUILDSTDERR: dlapack.f:9776:21: BUILDSTDERR: HSWORK = WORK( 1 ) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] BUILDSTDERR: dlapack.f:16788:28: BUILDSTDERR: LWORK_DGEQRF=DUM(1) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] BUILDSTDERR: dlapack.f:16792:28: BUILDSTDERR: LWORK_DORMQR=DUM(1) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] BUILDSTDERR: dlapack.f:16807:28: BUILDSTDERR: LWORK_DGEBRD=DUM(1) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] BUILDSTDERR: dlapack.f:16811:28: BUILDSTDERR: LWORK_DORMBR=DUM(1) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] BUILDSTDERR: dlapack.f:98487:18: BUILDSTDERR: LWKOPT = WORK( 1 ) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] BUILDSTDERR: dlapack.f:16815:28: BUILDSTDERR: LWORK_DORGBR=DUM(1) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] BUILDSTDERR: dlapack.f:16839:31: BUILDSTDERR: LWORK_DGELQF=DUM(1) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] BUILDSTDERR: dlapack.f:16843:31: BUILDSTDERR: LWORK_DGEBRD=DUM(1) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] BUILDSTDERR: dlapack.f:16847:31: BUILDSTDERR: LWORK_DORMBR=DUM(1) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] BUILDSTDERR: dlapack.f:16851:31: BUILDSTDERR: LWORK_DORGBR=DUM(1) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] BUILDSTDERR: dlapack.f:16855:31: BUILDSTDERR: LWORK_DORMLQ=DUM(1) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] BUILDSTDERR: dlapack.f:16875:31: BUILDSTDERR: LWORK_DGEBRD=DUM(1) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] BUILDSTDERR: dlapack.f:16879:31: BUILDSTDERR: LWORK_DORMBR=DUM(1) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] BUILDSTDERR: dlapack.f:16883:31: BUILDSTDERR: LWORK_DORGBR=DUM(1) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] BUILDSTDERR: dlapack.f:36428:13: BUILDSTDERR: LOPT = WORK( 1 ) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] BUILDSTDERR: dlapack.f:35370:13: BUILDSTDERR: LOPT = WORK( M+NP+1 ) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] BUILDSTDERR: dlapack.f:36726:13: BUILDSTDERR: LOPT = WORK( 1 ) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] BUILDSTDERR: dlapack.f:36074:13: BUILDSTDERR: LOPT = WORK( P+MN+1 ) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] BUILDSTDERR: dlapack.f:124156:14: BUILDSTDERR: LWMIN = MAX( DBLE( LWMIN ), DBLE( WORK( 1 ) ) ) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] BUILDSTDERR: dlapack.f:124157:15: BUILDSTDERR: LIWMIN = MAX( DBLE( LIWMIN ), DBLE( IWORK( 1 ) ) ) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] BUILDSTDERR: dlapack.f:136875:13: BUILDSTDERR: LOPT = MAX( DBLE( LOPT ), DBLE( WORK( 1 ) ) ) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] BUILDSTDERR: dlapack.f:136876:14: BUILDSTDERR: LIOPT = MAX( DBLE( LIOPT ), DBLE( IWORK( 1 ) ) ) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] BUILDSTDERR: dlapack.f:138054:21: BUILDSTDERR: LWKOPT = WORK(1) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] BUILDSTDERR: dlapack.f:77843:34: BUILDSTDERR: SUBROUTINE DLARRV( N, VL, VU, D, L, PIVMIN, BUILDSTDERR: 1 BUILDSTDERR: Warning: Unused dummy argument 'vu' at (1) [-Wunused-dummy-argument] BUILDSTDERR: dlapack.f:74326:54: BUILDSTDERR: SUBROUTINE DLARRC( JOBT, N, VL, VU, D, E, PIVMIN, BUILDSTDERR: 1 BUILDSTDERR: Warning: Unused dummy argument 'pivmin' at (1) [-Wunused-dummy-argument] BUILDSTDERR: dlapack.f:46267:45: BUILDSTDERR: $ RELTOL, PIVMIN, D, E, E2, NVAL, AB, C, MOUT, BUILDSTDERR: 1 BUILDSTDERR: Warning: Unused dummy argument 'e' at (1) [-Wunused-dummy-argument] BUILDSTDERR: dlapack.f:58693:55: BUILDSTDERR: INTEGER FUNCTION DLANEG( N, D, LLD, SIGMA, PIVMIN, R ) BUILDSTDERR: 1 BUILDSTDERR: Warning: Unused dummy argument 'pivmin' at (1) [-Wunused-dummy-argument] BUILDSTDERR: SRC/iparam2stage.F:612:68: BUILDSTDERR: Warning: Unused dummy argument 'lwork' at (1) [-Wunused-dummy-argument] BUILDSTDERR: SRC/iparam2stage.F:612:51: BUILDSTDERR: Warning: Unused dummy argument 'n' at (1) [-Wunused-dummy-argument] BUILDSTDERR: SRC/iparam2stage.F:612:48: BUILDSTDERR: Warning: Unused dummy argument 'opts' at (1) [-Wunused-dummy-argument] BUILDSTDERR: dlapack.f:128949:23: BUILDSTDERR: $ ABSTOL, M, W, Z, LDZ, ISUPPZ, WORK, LWORK, IWORK, BUILDSTDERR: 1 BUILDSTDERR: Warning: Unused dummy argument 'abstol' at (1) [-Wunused-dummy-argument] BUILDSTDERR: dlapack.f:95122:0: BUILDSTDERR: X( J ) = X( J ) / TJJS - SUMJ BUILDSTDERR: BUILDSTDERR: Warning: 'tjjs' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:93997:0: BUILDSTDERR: X( J ) = X( J ) / TJJS - SUMJ BUILDSTDERR: BUILDSTDERR: Warning: 'tjjs' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:92881:0: BUILDSTDERR: X( J ) = X( J ) / TJJS - SUMJ BUILDSTDERR: BUILDSTDERR: Warning: 'tjjs' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:126561:0: BUILDSTDERR: IPIV( K ) = KP BUILDSTDERR: BUILDSTDERR: Warning: 'kp' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:126255:0: BUILDSTDERR: ELSE IF( ABS( AP( KPC+IMAX-1 ) ).GE.ALPHA*ROWMAX ) THEN BUILDSTDERR: BUILDSTDERR: Warning: 'imax' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:155012:0: BUILDSTDERR: $ AP( JCLAST ), AP( JC+1 ), 1 ) BUILDSTDERR: BUILDSTDERR: Warning: 'jclast' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:79873:0: BUILDSTDERR: ISEED( 4 ) = IT4 BUILDSTDERR: BUILDSTDERR: Warning: 'it4' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:79872:0: BUILDSTDERR: ISEED( 3 ) = IT3 BUILDSTDERR: BUILDSTDERR: Warning: 'it3' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:79871:0: BUILDSTDERR: ISEED( 2 ) = IT2 BUILDSTDERR: BUILDSTDERR: Warning: 'it2' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:79870:0: BUILDSTDERR: ISEED( 1 ) = IT1 BUILDSTDERR: BUILDSTDERR: Warning: 'it1' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:129396:0: BUILDSTDERR: IF( NRM.LT.DTPCRT ) BUILDSTDERR: BUILDSTDERR: Warning: 'dtpcrt' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:129376:0: BUILDSTDERR: IF( ABS( XJ-XJM ).GT.ORTOL ) BUILDSTDERR: BUILDSTDERR: Warning: 'xjm' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:129362:0: BUILDSTDERR: $ ABS( WORK( INDRV1+JMAX ) ) BUILDSTDERR: BUILDSTDERR: Warning: 'onenrm' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:129376:0: BUILDSTDERR: IF( ABS( XJ-XJM ).GT.ORTOL ) BUILDSTDERR: BUILDSTDERR: Warning: 'ortol' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:129187:0: BUILDSTDERR: INTEGER B1, BLKSIZ, BN, GPIND, I, IINFO, INDRV1, BUILDSTDERR: BUILDSTDERR: Warning: 'gpind' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:49708:0: BUILDSTDERR: $ TAU = TAU*SCLINV BUILDSTDERR: BUILDSTDERR: Warning: 'sclinv' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:30048:0: BUILDSTDERR: A( N, N ) = SMIN BUILDSTDERR: BUILDSTDERR: Warning: 'smin' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:30030:0: BUILDSTDERR: $ CALL DSWAP( N, A( 1, JPV ), 1, A( 1, I ), 1 ) BUILDSTDERR: BUILDSTDERR: Warning: 'jpv' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:30024:0: BUILDSTDERR: $ CALL DSWAP( N, A( IPV, 1 ), LDA, A( I, 1 ), LDA ) BUILDSTDERR: BUILDSTDERR: Warning: 'ipv' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:91209:0: BUILDSTDERR: IF( JPSV.NE.I ) BUILDSTDERR: BUILDSTDERR: Warning: 'jpsv' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:91203:0: BUILDSTDERR: IF( IPSV.NE.I ) THEN BUILDSTDERR: BUILDSTDERR: Warning: 'ipsv' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:147008:0: BUILDSTDERR: IF( ILBACK ) THEN BUILDSTDERR: BUILDSTDERR: Warning: 'ilback' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:88702:0: BUILDSTDERR: TAU = S BUILDSTDERR: BUILDSTDERR: Warning: 's' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:139541:0: BUILDSTDERR: $ CALL DSWAP( N-KP, A( KP+1, KK ), 1, A( KP+1, KP ), 1 ) BUILDSTDERR: BUILDSTDERR: Warning: 'imax' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:57295:0: BUILDSTDERR: $ DIFRJ ) / ( POLES( I, 2 )+DJ ) BUILDSTDERR: BUILDSTDERR: Warning: 'difrj' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:85755:0: BUILDSTDERR: $ / ( DSIGMA( I )+DJ ) BUILDSTDERR: BUILDSTDERR: Warning: 'difrj' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:62441:0: BUILDSTDERR: DOUBLE PRECISION SCALE, SUM, VALUE BUILDSTDERR: BUILDSTDERR: Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:62069:0: BUILDSTDERR: DOUBLE PRECISION SCALE, SUM, VALUE BUILDSTDERR: BUILDSTDERR: Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:61724:0: BUILDSTDERR: DOUBLE PRECISION SCALE, SUM, VALUE BUILDSTDERR: BUILDSTDERR: Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:61464:0: BUILDSTDERR: DOUBLE PRECISION ABSA, SCALE, SUM, VALUE BUILDSTDERR: BUILDSTDERR: Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:61256:0: BUILDSTDERR: DOUBLE PRECISION ANORM, SCALE, SUM BUILDSTDERR: BUILDSTDERR: Warning: 'anorm' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:61009:0: BUILDSTDERR: DOUBLE PRECISION ABSA, SCALE, SUM, VALUE BUILDSTDERR: BUILDSTDERR: Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:59803:0: BUILDSTDERR: DOUBLE PRECISION ABSA, SCALE, SUM, VALUE BUILDSTDERR: BUILDSTDERR: Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:55512:0: BUILDSTDERR: A( K+NB, NB ) = EI BUILDSTDERR: BUILDSTDERR: Warning: 'ei' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:50392:0: BUILDSTDERR: INTEGER I, IMAX, J, JLAM, JMAX, JP, K2, N1, N1P1, N2 BUILDSTDERR: BUILDSTDERR: Warning: 'jlam' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:47548:0: BUILDSTDERR: $ N2, NJ, PJ BUILDSTDERR: BUILDSTDERR: Warning: 'pj' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:55184:0: BUILDSTDERR: IF( I2.GT.I ) BUILDSTDERR: BUILDSTDERR: Warning: 'i2' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:85161:0: BUILDSTDERR: INTEGER I, IDXI, IDXJ, IDXJP, J, JP, JPREV, K2, M, N, BUILDSTDERR: BUILDSTDERR: Warning: 'jprev' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:82313:0: BUILDSTDERR: INTEGER CT, I, IDXI, IDXJ, IDXJP, J, JP, JPREV, K2, M, BUILDSTDERR: BUILDSTDERR: Warning: 'jprev' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:59577:0: BUILDSTDERR: DOUBLE PRECISION SCALE, SUM, VALUE BUILDSTDERR: BUILDSTDERR: Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:43147:0: BUILDSTDERR: IF( ILZ ) THEN BUILDSTDERR: BUILDSTDERR: Warning: 'ilz' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:42638:0: BUILDSTDERR: IF( ILQ ) THEN BUILDSTDERR: BUILDSTDERR: Warning: 'ilq' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:42516:0: BUILDSTDERR: IF( .NOT.ILSCHR ) THEN BUILDSTDERR: BUILDSTDERR: Warning: 'ilschr' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:59367:0: BUILDSTDERR: DOUBLE PRECISION ANORM, SCALE, SUM, TEMP BUILDSTDERR: BUILDSTDERR: Warning: 'anorm' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:59164:0: BUILDSTDERR: DOUBLE PRECISION SCALE, SUM, VALUE, TEMP BUILDSTDERR: BUILDSTDERR: Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:159919:0: BUILDSTDERR: WORK( 1 ) = LWMIN BUILDSTDERR: BUILDSTDERR: Warning: 'lwmin' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:159920:0: BUILDSTDERR: IWORK( 1 ) = LIWMIN BUILDSTDERR: BUILDSTDERR: Warning: 'liwmin' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:58950:0: BUILDSTDERR: DOUBLE PRECISION SCALE, SUM, VALUE, TEMP BUILDSTDERR: BUILDSTDERR: Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: SRC/iparam2stage.F:770:0: BUILDSTDERR: Warning: 'ns' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: SRC/iparam2stage.F:761:0: BUILDSTDERR: Warning: 'nh' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:128102:0: BUILDSTDERR: ELSE IF( W( JE ).GE.WUL .AND. IDISCU.GT.0 ) THEN BUILDSTDERR: BUILDSTDERR: Warning: 'wul' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:128100:0: BUILDSTDERR: IF( W( JE ).LE.WLU .AND. IDISCL.GT.0 ) THEN BUILDSTDERR: BUILDSTDERR: Warning: 'wlu' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:46794:0: BUILDSTDERR: $ IGIVPT, INDXQ, IPERM, IPRMPT, IQ, IQPTR, IWREM, BUILDSTDERR: BUILDSTDERR: Warning: 'iwrem' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:46921:0: BUILDSTDERR: $ INFO ) BUILDSTDERR: BUILDSTDERR: Warning: 'iqptr' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:46921:0: Warning: 'iq' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:46794:0: BUILDSTDERR: $ IGIVPT, INDXQ, IPERM, IPRMPT, IQ, IQPTR, IWREM, BUILDSTDERR: BUILDSTDERR: Warning: 'iprmpt' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:46794:0: Warning: 'iperm' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:46794:0: Warning: 'igivpt' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:46793:0: BUILDSTDERR: INTEGER CURLVL, CURPRB, CURR, I, IGIVCL, IGIVNM, BUILDSTDERR: BUILDSTDERR: Warning: 'igivcl' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:102785:0: BUILDSTDERR: IF( LWORK.LT.NW*NB+TSIZE ) THEN BUILDSTDERR: BUILDSTDERR: Warning: 'nb' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:99539:0: BUILDSTDERR: IWS = LDWORK*NB BUILDSTDERR: BUILDSTDERR: Warning: 'nb' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:135615:0: BUILDSTDERR: WORK( 1 ) = LWKOPT BUILDSTDERR: BUILDSTDERR: Warning: 'lwkopt' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:75191:0: BUILDSTDERR: IF( W( JE ).GE.WUL .AND. IDISCU.GT.0 ) THEN BUILDSTDERR: BUILDSTDERR: Warning: 'wul' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:75174:0: BUILDSTDERR: IF( W( JE ).LE.WLU .AND. IDISCL.GT.0 ) THEN BUILDSTDERR: BUILDSTDERR: Warning: 'wlu' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:75712:0: BUILDSTDERR: $ ((IRANGE.EQ.VALRNG).AND.(D(1).GT.VL).AND.(D(1).LE.VU)).OR. BUILDSTDERR: BUILDSTDERR: Warning: 'irange' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:76205:0: BUILDSTDERR: WBEGIN = WEND + 1 BUILDSTDERR: BUILDSTDERR: Warning: 'wend' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:75953:0: BUILDSTDERR: IF(MB.EQ.1) THEN BUILDSTDERR: BUILDSTDERR: Warning: 'mb' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:104042:0: BUILDSTDERR: IF( LWORK.LT.NW*NB+TSIZE ) THEN BUILDSTDERR: BUILDSTDERR: Warning: 'nb' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:22115:0: BUILDSTDERR: IWS = LDWORK*NB BUILDSTDERR: BUILDSTDERR: Warning: 'nb' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:152216:0: BUILDSTDERR: SCALE = SCALE2 BUILDSTDERR: BUILDSTDERR: Warning: 'scale2' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:150508:0: BUILDSTDERR: DIF( KS ) = COND BUILDSTDERR: BUILDSTDERR: Warning: 'cond' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:1544:0: BUILDSTDERR: $ WORK( WSTART ), IWORK, INFO ) BUILDSTDERR: BUILDSTDERR: Warning: 'z' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:1544:0: Warning: 'poles' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:1544:0: Warning: 'ivt' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:1544:0: Warning: 'is' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:1544:0: Warning: 'ic' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:1544:0: Warning: 'givnum' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:1544:0: Warning: 'givcol' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:1544:0: Warning: 'difr' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:1544:0: Warning: 'difl' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:104412:0: BUILDSTDERR: IF( LWORK.LT.NW*NB+TSIZE ) THEN BUILDSTDERR: BUILDSTDERR: Warning: 'nb' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:163493:0: BUILDSTDERR: IWS = LDWORK*NB BUILDSTDERR: BUILDSTDERR: Warning: 'nb' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:13098:0: BUILDSTDERR: DO 40 I = ILO, IHI - 1 - NX, NB BUILDSTDERR: BUILDSTDERR: Warning: 'nx' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:5390:0: BUILDSTDERR: ROWCND = MAX( RCMIN, SMLNUM ) / MIN( RCMAX, BIGNUM ) BUILDSTDERR: BUILDSTDERR: Warning: 'smlnum' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:5390:0: Warning: 'bignum' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:9704:0: BUILDSTDERR: $ MAXWRK, MINWRK BUILDSTDERR: BUILDSTDERR: Warning: 'maxwrk' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:17068:0: BUILDSTDERR: ELSE IF( N.GE.MNTHR .AND. LWORK.GE.4*M+M*M+ BUILDSTDERR: BUILDSTDERR: Warning: 'mnthr' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:18898:0: BUILDSTDERR: IWS = LDWORK*NB BUILDSTDERR: BUILDSTDERR: Warning: 'nb' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:24345:0: BUILDSTDERR: $ NRVT, WRKBL BUILDSTDERR: BUILDSTDERR: Warning: 'wrkbl' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:26179:0: BUILDSTDERR: IF( N.GE.MNTHR ) THEN BUILDSTDERR: BUILDSTDERR: Warning: 'mnthr' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:24342:0: BUILDSTDERR: INTEGER BDSPAC, BLK, CHUNK, I, IE, IERR, IR, ISCL, BUILDSTDERR: BUILDSTDERR: Warning: 'bdspac' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:29665:0: BUILDSTDERR: ROWCND = MAX( RCMIN, SMLNUM ) / MIN( RCMAX, BIGNUM ) BUILDSTDERR: BUILDSTDERR: Warning: 'smlnum' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:29665:0: Warning: 'bignum' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:55813:0: BUILDSTDERR: A( K+NB, NB ) = EI BUILDSTDERR: BUILDSTDERR: Warning: 'ei' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:60141:0: BUILDSTDERR: DOUBLE PRECISION SCALE, S, VALUE, AA, TEMP BUILDSTDERR: BUILDSTDERR: Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:97738:0: BUILDSTDERR: $ WORK(IORBDB), LORBDBWORK, CHILDINFO ) BUILDSTDERR: BUILDSTDERR: Warning: 'itauq2' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:97738:0: Warning: 'itauq1' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:97738:0: Warning: 'itaup2' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:97738:0: Warning: 'itaup1' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:97795:0: BUILDSTDERR: $ WORK(IORGQR), LORGQRWORK, INFO ) BUILDSTDERR: BUILDSTDERR: Warning: 'iorgqr' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:97772:0: BUILDSTDERR: $ WORK(IORGLQ), LORGLQWORK, INFO ) BUILDSTDERR: BUILDSTDERR: Warning: 'iorglq' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:97738:0: BUILDSTDERR: $ WORK(IORBDB), LORBDBWORK, CHILDINFO ) BUILDSTDERR: BUILDSTDERR: Warning: 'iorbdb' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:97812:0: BUILDSTDERR: $ WORK(IB22E), WORK(IBBCSD), LBBCSDWORK, INFO ) BUILDSTDERR: BUILDSTDERR: Warning: 'ibbcsd' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:97812:0: Warning: 'ib22e' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:97812:0: Warning: 'ib22d' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:97812:0: Warning: 'ib21e' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:97812:0: Warning: 'ib21d' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:97812:0: Warning: 'ib12e' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:97812:0: Warning: 'ib12d' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:97812:0: Warning: 'ib11e' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:97812:0: Warning: 'ib11d' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:100327:0: BUILDSTDERR: IWS = LDWORK*NB BUILDSTDERR: BUILDSTDERR: Warning: 'nb' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:106741:0: BUILDSTDERR: SCOND = MAX( SMIN, SMLNUM ) / MIN( SMAX, BIGNUM ) BUILDSTDERR: BUILDSTDERR: Warning: 'smlnum' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:106741:0: Warning: 'bignum' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:110628:0: BUILDSTDERR: SCOND = MAX( SMIN, SMLNUM ) / MIN( SMAX, BIGNUM ) BUILDSTDERR: BUILDSTDERR: Warning: 'smlnum' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:110628:0: Warning: 'bignum' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:113309:0: BUILDSTDERR: SCOND = MAX( SMIN, SMLNUM ) / MIN( SMAX, BIGNUM ) BUILDSTDERR: BUILDSTDERR: Warning: 'smlnum' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: dlapack.f:113309:0: Warning: 'bignum' may be used uninitialized in this function [-Wmaybe-uninitialized] gfortran -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c cmplx.f -o cmplx.o BUILDSTDERR: cmplx.f:1780:19: BUILDSTDERR: K = SCALE( I ) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] BUILDSTDERR: cmplx.f:1794:19: BUILDSTDERR: K = SCALE( I ) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] BUILDSTDERR: cmplx.f:2456:21: BUILDSTDERR: D( I ) = ALPHA BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] BUILDSTDERR: cmplx.f:2475:24: BUILDSTDERR: E( I ) = ALPHA BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] BUILDSTDERR: cmplx.f:2500:21: BUILDSTDERR: D( I ) = ALPHA BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] BUILDSTDERR: cmplx.f:2519:24: BUILDSTDERR: E( I ) = ALPHA BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] BUILDSTDERR: cmplx.f:21690:21: BUILDSTDERR: D( I ) = ALPHA BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] BUILDSTDERR: cmplx.f:21730:24: BUILDSTDERR: E( I ) = ALPHA BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] BUILDSTDERR: cmplx.f:21774:21: BUILDSTDERR: D( I ) = ALPHA BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] BUILDSTDERR: cmplx.f:21808:24: BUILDSTDERR: E( I ) = ALPHA BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] BUILDSTDERR: cmplx.f:3759:21: BUILDSTDERR: HSWORK = WORK( 1 ) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from COMPLEX(8) to INTEGER(4) at (1) [-Wconversion] BUILDSTDERR: cmplx.f:50903:18: BUILDSTDERR: LWKOPT = WORK( 1 ) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from COMPLEX(8) to INTEGER(4) at (1) [-Wconversion] BUILDSTDERR: cmplx.f:18862:18: BUILDSTDERR: W( 1 ) = A( 1, 1 ) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] BUILDSTDERR: cmplx.f:38115:26: BUILDSTDERR: E( I-1 ) = ALPHA BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] BUILDSTDERR: cmplx.f:38169:24: BUILDSTDERR: E( I ) = ALPHA BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] BUILDSTDERR: cmplx.f:19996:24: BUILDSTDERR: D( J ) = A( J, J ) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] BUILDSTDERR: cmplx.f:19582:21: BUILDSTDERR: E( I ) = ALPHA BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] BUILDSTDERR: cmplx.f:19610:23: BUILDSTDERR: D( I+1 ) = A( I+1, I+1 ) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] BUILDSTDERR: cmplx.f:19613:18: BUILDSTDERR: D( 1 ) = A( 1, 1 ) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] BUILDSTDERR: cmplx.f:19626:21: BUILDSTDERR: E( I ) = ALPHA BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] BUILDSTDERR: cmplx.f:19655:21: BUILDSTDERR: D( I ) = A( I, I ) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] BUILDSTDERR: cmplx.f:19658:18: BUILDSTDERR: D( N ) = A( N, N ) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] BUILDSTDERR: cmplx.f:20028:24: BUILDSTDERR: D( J ) = A( J, J ) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] BUILDSTDERR: cmplx.f:19253:18: BUILDSTDERR: W( 1 ) = A( 1, 1 ) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] BUILDSTDERR: cmplx.f:39333:18: BUILDSTDERR: AII = A( I, I ) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] BUILDSTDERR: cmplx.f:39352:18: BUILDSTDERR: AII = A( I, I ) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] BUILDSTDERR: cmplx.f:39774:18: BUILDSTDERR: AJJ = DBLE( A( J, J ) ) - ZDOTC( J-1, A( 1, J ), 1, BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] BUILDSTDERR: cmplx.f:39801:18: BUILDSTDERR: AJJ = DBLE( A( J, J ) ) - ZDOTC( J-1, A( J, 1 ), LDA, BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] BUILDSTDERR: cmplx.f:42206:0: BUILDSTDERR: INTEGER I, INFO, IX, J, JX, KX BUILDSTDERR: BUILDSTDERR: Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplx.f:42834:0: BUILDSTDERR: $ CALL ZSWAP( N-KP, A( KP+1, KK ), 1, A( KP+1, KP ), 1 ) BUILDSTDERR: BUILDSTDERR: Warning: 'imax' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplx.f:23865:0: BUILDSTDERR: INTEGER I, IMAX, J, JLAM, JMAX, JP, K2, N1, N1P1, N2 BUILDSTDERR: BUILDSTDERR: Warning: 'jlam' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplx.f:28016:0: BUILDSTDERR: DOUBLE PRECISION SCALE, SUM, VALUE BUILDSTDERR: BUILDSTDERR: Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplx.f:27532:0: BUILDSTDERR: DOUBLE PRECISION ABSA, SCALE, SUM, VALUE BUILDSTDERR: BUILDSTDERR: Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplx.f:44370:0: BUILDSTDERR: IF( ILBACK ) THEN BUILDSTDERR: BUILDSTDERR: Warning: 'ilback' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplx.f:44246:0: BUILDSTDERR: IF( ILALL ) THEN BUILDSTDERR: BUILDSTDERR: Warning: 'ilall' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplx.f:27310:0: BUILDSTDERR: DOUBLE PRECISION SCALE, SUM, VALUE, TEMP BUILDSTDERR: BUILDSTDERR: Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplx.f:15026:0: BUILDSTDERR: A( N, N ) = DCMPLX( SMIN, ZERO ) BUILDSTDERR: BUILDSTDERR: Warning: 'smin' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplx.f:15008:0: BUILDSTDERR: $ CALL ZSWAP( N, A( 1, JPV ), 1, A( 1, I ), 1 ) BUILDSTDERR: BUILDSTDERR: Warning: 'jpv' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplx.f:15002:0: BUILDSTDERR: $ CALL ZSWAP( N, A( IPV, 1 ), LDA, A( I, 1 ), LDA ) BUILDSTDERR: BUILDSTDERR: Warning: 'ipv' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplx.f:27775:0: BUILDSTDERR: DOUBLE PRECISION SCALE, SUM, VALUE BUILDSTDERR: BUILDSTDERR: Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplx.f:20898:0: BUILDSTDERR: IF( ILZ ) BUILDSTDERR: BUILDSTDERR: Warning: 'ilz' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplx.f:20840:0: BUILDSTDERR: IF( ILQ ) THEN BUILDSTDERR: BUILDSTDERR: Warning: 'ilq' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplx.f:20732:0: BUILDSTDERR: IF( .NOT.ILSCHR ) THEN BUILDSTDERR: BUILDSTDERR: Warning: 'ilschr' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplx.f:25696:0: BUILDSTDERR: $ DIFRJ ) / ( POLES( I, 2 )+DJ ) BUILDSTDERR: BUILDSTDERR: Warning: 'difrj' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplx.f:24636:0: BUILDSTDERR: $ CALL ZSCAL( I2-I, DCONJG( TEMP ), H( I, I+1 ), LDH ) BUILDSTDERR: BUILDSTDERR: Warning: 'i2' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplx.f:24973:0: BUILDSTDERR: A( K+NB, NB ) = EI BUILDSTDERR: BUILDSTDERR: Warning: 'IMAGPART_EXPR ' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplx.f:24973:0: Warning: 'REALPART_EXPR ' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplx.f:46945:0: BUILDSTDERR: SCALE = SCALE2 BUILDSTDERR: BUILDSTDERR: Warning: 'scale2' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplx.f:49028:0: BUILDSTDERR: WORK( 1 ) = LWMIN BUILDSTDERR: BUILDSTDERR: Warning: 'lwmin' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplx.f:55232:0: BUILDSTDERR: IF( LWORK.LT.NW*NB+TSIZE ) THEN BUILDSTDERR: BUILDSTDERR: Warning: 'nb' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplx.f:51959:0: BUILDSTDERR: IWS = LDWORK*NB BUILDSTDERR: BUILDSTDERR: Warning: 'nb' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplx.f:4925:0: BUILDSTDERR: DO 40 I = ILO, IHI - 1 - NX, NB BUILDSTDERR: BUILDSTDERR: Warning: 'nx' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplx.f:6475:0: BUILDSTDERR: ELSE IF( N.GE.MNTHR .AND. LWORK.GE.4*M+M*M+ BUILDSTDERR: BUILDSTDERR: Warning: 'mnthr' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplx.f:10741:0: BUILDSTDERR: $ NRVT, WRKBL BUILDSTDERR: BUILDSTDERR: Warning: 'wrkbl' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplx.f:12670:0: BUILDSTDERR: IF( N.GE.MNTHR ) THEN BUILDSTDERR: BUILDSTDERR: Warning: 'mnthr' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplx.f:14642:0: BUILDSTDERR: ROWCND = MAX( RCMIN, SMLNUM ) / MIN( RCMAX, BIGNUM ) BUILDSTDERR: BUILDSTDERR: Warning: 'smlnum' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplx.f:14642:0: Warning: 'bignum' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: cmplx.f:52750:0: BUILDSTDERR: IWS = LDWORK*NB BUILDSTDERR: BUILDSTDERR: Warning: 'nb' may be used uninitialized in this function [-Wmaybe-uninitialized] gcc -shared -fopenmp -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o libRlapack.so dlamch.o dlapack.o cmplx.o -L"../../../lib" -lRblas -L -L -lgfortran -lm make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/modules/lapack' make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/modules/lapack' gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c Lapack.c -o Lapack.o gcc -shared -L"../../../lib" -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o lapack.so Lapack.o -lR -L"../../../lib" -lRlapack -L"../../../lib" -lRblas -L -L -lgfortran -lm make[5]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/modules/lapack' /builddir/build/BUILD/R-3.5.0/lib/libRlapack.so is unchanged make[5]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/modules/lapack' make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/modules/lapack' make[3]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/modules/lapack' make[3]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/modules/X11' making devX11.d from devX11.c making rotated.d from rotated.c making rbitmap.d from rbitmap.c make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/modules/X11' gcc -I/usr/include/libpng16 -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I/usr/include/harfbuzz -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c devX11.c -o devX11.o gcc -I/usr/include/libpng16 -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I/usr/include/harfbuzz -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rotated.c -o rotated.o gcc -I/usr/include/libpng16 -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I/usr/include/harfbuzz -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rbitmap.c -o rbitmap.o gcc -shared -L"../../../lib" -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o R_X11.so devX11.o rotated.o rbitmap.o -ltiff -ljpeg -lpng16 -lz -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng16 -lz -lcairo -lX11 -lXext -lX11 -lXt -lXmu -lR -lm gcc -I/usr/include/libpng16 -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I/usr/include/harfbuzz -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dataentry.c -o dataentry.o gcc -shared -L"../../../lib" -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o R_de.so dataentry.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng16 -lz -lcairo -lX11 -lXext -lX11 -lXt -lXmu -lR -lm make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/modules/X11' make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/modules/X11' make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/modules/X11' make[3]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/modules/X11' make[2]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/modules' make[2]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library' mkdir -p -- ../../library make[3]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/profile' building system startup profile mkdir -p -- ../../../library/base/R make[3]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/profile' make[3]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/translations' building package 'translations' mkdir -p -- ../../../library/translations make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/translations' make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/translations' make[3]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/translations' make[3]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/base' building package 'base' make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/base' mkdir -p -- ../../../library/base/demo make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/base' make[3]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/base' make[3]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/tools' building package 'tools' mkdir -p -- ../../../library/tools make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/tools' mkdir -p -- ../../../library/tools/R make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/tools' make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/tools' make[5]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/tools/src' making text.d from text.c making init.d from init.c making Rmd5.d from Rmd5.c making md5.d from md5.c making signals.d from signals.c making install.d from install.c making getfmts.d from getfmts.c making http.d from http.c making gramLatex.d from gramLatex.c making gramRd.d from gramRd.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c text.c -o text.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c Rmd5.c -o Rmd5.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c md5.c -o md5.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c signals.c -o signals.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c install.c -o install.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c getfmts.c -o getfmts.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c http.c -o http.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c gramLatex.c -o gramLatex.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c gramRd.c -o gramRd.o gcc -shared -L../../../../lib -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/tools/src' mkdir -p -- ../../../../library/tools/libs make[6]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/tools/src' make[5]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/tools/src' make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/tools' make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/tools' installing 'sysdata.rda' make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/tools' make[3]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/tools' make[3]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/compiler' building package 'compiler' mkdir -p -- ../../../library/compiler make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/compiler' mkdir -p -- ../../../library/compiler/R make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/compiler' make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/compiler' byte-compiling package 'compiler' make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/compiler' make[3]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/compiler' make[3]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/base' byte-compiling package 'base' make[3]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/base' make[3]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/tools' byte-compiling package 'tools' make[3]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/tools' make[3]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/utils' building package 'utils' mkdir -p -- ../../../library/utils mkdir -p -- ../../../library/utils/doc make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/utils' mkdir -p -- ../../../library/utils/R mkdir -p -- ../../../library/utils/Sweave mkdir -p -- ../../../library/utils/misc make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/utils' make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/utils' make[5]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/utils/src' making init.d from init.c making io.d from io.c making size.d from size.c making sock.d from sock.c making stubs.d from stubs.c making utils.d from utils.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c io.c -o io.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c size.c -o size.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c sock.c -o sock.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c stubs.c -o stubs.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c utils.c -o utils.o gcc -shared -L../../../../lib -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o utils.so init.o io.o size.o sock.o stubs.o utils.o -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/utils/src' mkdir -p -- ../../../../library/utils/libs make[6]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/utils/src' make[5]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/utils/src' make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/utils' make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/utils' installing 'sysdata.rda' make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/utils' make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/utils' byte-compiling package 'utils' make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/utils' make[3]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/utils' make[3]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/grDevices' building package 'grDevices' mkdir -p -- ../../../library/grDevices make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/grDevices' mkdir -p -- ../../../library/grDevices/R mkdir -p -- ../../../library/grDevices/afm mkdir -p -- ../../../library/grDevices/enc mkdir -p -- ../../../library/grDevices/icc make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/grDevices' make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/grDevices' make[5]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/grDevices/src' making axis_scales.d from axis_scales.c making chull.d from chull.c making devices.d from devices.c making init.d from init.c making stubs.d from stubs.c making colors.d from colors.c making devCairo.d from devCairo.c making devPicTeX.d from devPicTeX.c making devPS.d from devPS.c making devQuartz.d from devQuartz.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c axis_scales.c -o axis_scales.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c chull.c -o chull.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c devices.c -o devices.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c stubs.c -o stubs.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c colors.c -o colors.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c devCairo.c -o devCairo.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c devPicTeX.c -o devPicTeX.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c devPS.c -o devPS.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c devQuartz.c -o devQuartz.o gcc -shared -L../../../../lib -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o devCairo.o devPicTeX.o devPS.o devQuartz.o -lz -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/grDevices/src' mkdir -p -- ../../../../library/grDevices/libs make[7]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/grDevices/src/cairo' making cairoBM.d from cairoBM.c make[8]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/grDevices/src/cairo' make[9]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/grDevices/src/cairo' gcc -I. -I../../../../../src/include -I../../../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/uuid -I/usr/include/harfbuzz -I../../../../../src/modules/X11 -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c cairoBM.c -o cairoBM.o gcc -shared -L"../../../../../lib" -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -ltiff -ljpeg -lpng16 -lz -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng16 -lz -lcairo -L"../../../../../lib" -lR -lm make[9]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/grDevices/src/cairo' make[8]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/grDevices/src/cairo' make[7]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/grDevices/src/cairo' make[6]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/grDevices/src' make[5]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/grDevices/src' make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/grDevices' make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/grDevices' byte-compiling package 'grDevices' make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/grDevices' make[3]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/grDevices' make[3]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/graphics' building package 'graphics' mkdir -p -- ../../../library/graphics make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/graphics' mkdir -p -- ../../../library/graphics/R make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/graphics' make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/graphics' make[5]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/graphics/src' making init.d from init.c making base.d from base.c making graphics.d from graphics.c making par.d from par.c making plot.d from plot.c making plot3d.d from plot3d.c making stem.d from stem.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c base.c -o base.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c graphics.c -o graphics.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c par.c -o par.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c plot.c -o plot.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c plot3d.c -o plot3d.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c stem.c -o stem.o gcc -shared -L../../../../lib -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/graphics/src' mkdir -p -- ../../../../library/graphics/libs make[6]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/graphics/src' make[5]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/graphics/src' make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/graphics' make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/graphics' byte-compiling package 'graphics' make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/graphics' make[3]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/graphics' make[3]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/stats' building package 'stats' mkdir -p -- ../../../library/stats make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/stats' mkdir -p -- ../../../library/stats/R make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/stats' make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/stats' make[5]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/stats/src' making init.d from init.c making kmeans.d from kmeans.c making ansari.d from ansari.c making bandwidths.d from bandwidths.c making chisqsim.d from chisqsim.c making d2x2xk.d from d2x2xk.c making fexact.d from fexact.c making kendall.d from kendall.c making ks.d from ks.c making line.d from line.c making smooth.d from smooth.c making prho.d from prho.c making swilk.d from swilk.c making ksmooth.d from ksmooth.c making loessc.d from loessc.c making monoSpl.d from monoSpl.c making isoreg.d from isoreg.c making Srunmed.d from Srunmed.c making dblcen.d from dblcen.c making distance.d from distance.c making hclust-utils.d from hclust-utils.c making nls.d from nls.c making rWishart.d from rWishart.c making HoltWinters.d from HoltWinters.c making PPsum.d from PPsum.c making arima.d from arima.c making burg.d from burg.c making filter.d from filter.c making mAR.d from mAR.c making pacf.d from pacf.c making starma.d from starma.c making port.d from port.c making family.d from family.c making sbart.d from sbart.c making approx.d from approx.c making loglin.d from loglin.c making lowess.d from lowess.c making massdist.d from massdist.c making splines.d from splines.c making lm.d from lm.c making complete_cases.d from complete_cases.c making cov.d from cov.c making deriv.d from deriv.c making fft.d from fft.c making fourier.d from fourier.c making model.d from model.c making optim.d from optim.c making optimize.d from optimize.c making integrate.d from integrate.c making random.d from random.c making distn.d from distn.c making zeroin.d from zeroin.c making rcont.d from rcont.c making influence.d from influence.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c kmeans.c -o kmeans.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ansari.c -o ansari.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c bandwidths.c -o bandwidths.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c chisqsim.c -o chisqsim.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c d2x2xk.c -o d2x2xk.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c fexact.c -o fexact.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c kendall.c -o kendall.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ks.c -o ks.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c line.c -o line.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c smooth.c -o smooth.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c prho.c -o prho.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c swilk.c -o swilk.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ksmooth.c -o ksmooth.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c loessc.c -o loessc.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c monoSpl.c -o monoSpl.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c isoreg.c -o isoreg.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c Srunmed.c -o Srunmed.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dblcen.c -o dblcen.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c distance.c -o distance.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c hclust-utils.c -o hclust-utils.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c nls.c -o nls.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rWishart.c -o rWishart.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c HoltWinters.c -o HoltWinters.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c PPsum.c -o PPsum.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c arima.c -o arima.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c burg.c -o burg.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c filter.c -o filter.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c mAR.c -o mAR.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pacf.c -o pacf.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c starma.c -o starma.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c port.c -o port.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c family.c -o family.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c sbart.c -o sbart.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c approx.c -o approx.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c loglin.c -o loglin.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c lowess.c -o lowess.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c massdist.c -o massdist.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c splines.c -o splines.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c lm.c -o lm.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c complete_cases.c -o complete_cases.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c cov.c -o cov.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c deriv.c -o deriv.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c fft.c -o fft.o BUILDSTDERR: fft.c: In function 'fft_work': BUILDSTDERR: fft.c:148:9: warning: array subscript -1 is below array bounds of 'int[20]' [-Warray-bounds] BUILDSTDERR: nfac--;/*the global one!*/ BUILDSTDERR: ~~~~^~ BUILDSTDERR: fft.c:148:9: warning: array subscript -1 is below array bounds of 'int[20]' [-Warray-bounds] BUILDSTDERR: fft.c:148:9: warning: array subscript -1 is below array bounds of 'int[20]' [-Warray-bounds] BUILDSTDERR: fft.c:148:9: warning: array subscript -1 is below array bounds of 'int[20]' [-Warray-bounds] BUILDSTDERR: fft.c:148:9: warning: array subscript -1 is below array bounds of 'int[20]' [-Warray-bounds] BUILDSTDERR: fft.c:148:9: warning: array subscript -1 is below array bounds of 'int[20]' [-Warray-bounds] BUILDSTDERR: fft.c:148:9: warning: array subscript -1 is below array bounds of 'int[20]' [-Warray-bounds] BUILDSTDERR: fft.c:148:9: warning: array subscript -1 is below array bounds of 'int[20]' [-Warray-bounds] BUILDSTDERR: fft.c:148:9: warning: array subscript -1 is below array bounds of 'int[20]' [-Warray-bounds] BUILDSTDERR: fft.c:148:9: warning: array subscript -1 is below array bounds of 'int[20]' [-Warray-bounds] gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c fourier.c -o fourier.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c model.c -o model.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c optim.c -o optim.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c optimize.c -o optimize.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c integrate.c -o integrate.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c random.c -o random.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c distn.c -o distn.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c zeroin.c -o zeroin.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rcont.c -o rcont.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c influence.c -o influence.o gfortran -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c bsplvd.f -o bsplvd.o gfortran -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c bvalue.f -o bvalue.o gfortran -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c bvalus.f -o bvalus.o gfortran -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c loessf.f -o loessf.o BUILDSTDERR: loessf.f:59:14: BUILDSTDERR: j=DBLE(j)/2.D0 BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] BUILDSTDERR: loessf.f:1893:14: BUILDSTDERR: m=DBLE(l+u)/2.D0 BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] BUILDSTDERR: loessf.f:1398:20: BUILDSTDERR: i=phi(pi(ii)) BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] BUILDSTDERR: loessf.f:927:12: BUILDSTDERR: lg=DBLE(lg)/2.D0 BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] BUILDSTDERR: loessf.f:522:22: BUILDSTDERR: if(deg.eq.2) dk=dble((d+2)*(d+1))/2.d0 BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] BUILDSTDERR: loessf.f:1204:13: BUILDSTDERR: ifloor=x BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] BUILDSTDERR: loessf.f:834:22: BUILDSTDERR: if(deg.eq.2) dk=dble((d+2)*(d+1))/2.d0 BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] BUILDSTDERR: loessf.f:1582:18: BUILDSTDERR: i1=dble((d+2)*(d+1))/2.d0 BUILDSTDERR: 1 BUILDSTDERR: Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] BUILDSTDERR: loessf.f:472:25: BUILDSTDERR: subroutine ehg133(n,d,vc,nvmax,nc,ncmax,a,c,hi,lo,v,vval,xi,m,z,s) BUILDSTDERR: 1 BUILDSTDERR: Warning: Unused dummy argument 'n' at (1) [-Wunused-dummy-argument] BUILDSTDERR: loessf.f:472:39: BUILDSTDERR: subroutine ehg133(n,d,vc,nvmax,nc,ncmax,a,c,hi,lo,v,vval,xi,m,z,s) BUILDSTDERR: 1 BUILDSTDERR: Warning: Unused dummy argument 'nc' at (1) [-Wunused-dummy-argument] BUILDSTDERR: loessf.f:827:31: BUILDSTDERR: subroutine ehg197(deg,tau,d,f,dk,trl) BUILDSTDERR: 1 BUILDSTDERR: Warning: Unused dummy argument 'tau' at (1) [-Wunused-dummy-argument] BUILDSTDERR: loessf.f:1984:31: BUILDSTDERR: subroutine ehg137(z,kappa,leaf,nleaf,d,nv,nvmax,ncmax,a,xi,lo,hi) BUILDSTDERR: 1 BUILDSTDERR: Warning: Unused dummy argument 'kappa' at (1) [-Wunused-dummy-argument] BUILDSTDERR: loessf.f:1984:47: BUILDSTDERR: subroutine ehg137(z,kappa,leaf,nleaf,d,nv,nvmax,ncmax,a,xi,lo,hi) BUILDSTDERR: 1 BUILDSTDERR: Warning: Unused dummy argument 'nv' at (1) [-Wunused-dummy-argument] BUILDSTDERR: loessf.f:1984:53: BUILDSTDERR: subroutine ehg137(z,kappa,leaf,nleaf,d,nv,nvmax,ncmax,a,xi,lo,hi) BUILDSTDERR: 1 BUILDSTDERR: Warning: Unused dummy argument 'nvmax' at (1) [-Wunused-dummy-argument] BUILDSTDERR: loessf.f:1497:50: BUILDSTDERR: subroutine lowesb(xx,yy,ww,diagl,infl,iv,liv,lv,wv) BUILDSTDERR: 1 BUILDSTDERR: Warning: Unused dummy argument 'liv' at (1) [-Wunused-dummy-argument] BUILDSTDERR: loessf.f:1497:53: BUILDSTDERR: subroutine lowesb(xx,yy,ww,diagl,infl,iv,liv,lv,wv) BUILDSTDERR: 1 BUILDSTDERR: Warning: Unused dummy argument 'lv' at (1) [-Wunused-dummy-argument] BUILDSTDERR: loessf.f:1648:30: BUILDSTDERR: subroutine lowese(iv,liv,lv,wv,m,z,s) BUILDSTDERR: 1 BUILDSTDERR: Warning: Unused dummy argument 'liv' at (1) [-Wunused-dummy-argument] BUILDSTDERR: loessf.f:1648:33: BUILDSTDERR: subroutine lowese(iv,liv,lv,wv,m,z,s) BUILDSTDERR: 1 BUILDSTDERR: Warning: Unused dummy argument 'lv' at (1) [-Wunused-dummy-argument] BUILDSTDERR: loessf.f:1667:39: BUILDSTDERR: subroutine lowesf(xx,yy,ww,iv,liv,lv,wv,m,z,l,ihat,s) BUILDSTDERR: 1 BUILDSTDERR: Warning: Unused dummy argument 'liv' at (1) [-Wunused-dummy-argument] BUILDSTDERR: loessf.f:1667:42: BUILDSTDERR: subroutine lowesf(xx,yy,ww,iv,liv,lv,wv,m,z,l,ihat,s) BUILDSTDERR: 1 BUILDSTDERR: Warning: Unused dummy argument 'lv' at (1) [-Wunused-dummy-argument] BUILDSTDERR: loessf.f:1699:30: BUILDSTDERR: subroutine lowesl(iv,liv,lv,wv,m,z,l) BUILDSTDERR: 1 BUILDSTDERR: Warning: Unused dummy argument 'liv' at (1) [-Wunused-dummy-argument] BUILDSTDERR: loessf.f:1699:33: BUILDSTDERR: subroutine lowesl(iv,liv,lv,wv,m,z,l) BUILDSTDERR: 1 BUILDSTDERR: Warning: Unused dummy argument 'lv' at (1) [-Wunused-dummy-argument] BUILDSTDERR: loessf.f:1721:33: BUILDSTDERR: subroutine lowesr(yy,iv,liv,lv,wv) BUILDSTDERR: 1 BUILDSTDERR: Warning: Unused dummy argument 'liv' at (1) [-Wunused-dummy-argument] BUILDSTDERR: loessf.f:1721:36: BUILDSTDERR: subroutine lowesr(yy,iv,liv,lv,wv) BUILDSTDERR: 1 BUILDSTDERR: Warning: Unused dummy argument 'lv' at (1) [-Wunused-dummy-argument] gfortran -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c ppr.f -o ppr.o gfortran -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c qsbart.f -o qsbart.o gfortran -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c sgram.f -o sgram.o gfortran -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c sinerp.f -o sinerp.o gfortran -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c sslvrg.f -o sslvrg.o gfortran -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c stxwx.f -o stxwx.o gfortran -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c hclust.f -o hclust.o gfortran -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c kmns.f -o kmns.o gfortran -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c eureka.f -o eureka.o gfortran -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c stl.f -o stl.o gfortran -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c portsrc.f -o portsrc.o BUILDSTDERR: portsrc.f:2291:15: BUILDSTDERR: DO 30 IR = 1, M BUILDSTDERR: 2 BUILDSTDERR: IPNTR(IR+1) = IPNTR(IR) + IWA(IR) BUILDSTDERR: 1 BUILDSTDERR: Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) BUILDSTDERR: portsrc.f:2299:21: BUILDSTDERR: portsrc.f:2297:72: BUILDSTDERR: DO 60 JCOL = 1, N BUILDSTDERR: 2 BUILDSTDERR: portsrc.f:2299:21: BUILDSTDERR: JPU = JPNTR(JCOL+1) - 1 BUILDSTDERR: 1 BUILDSTDERR: Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) BUILDSTDERR: portsrc.f:2690:15: BUILDSTDERR: DO 30 J = 1, N BUILDSTDERR: 2 BUILDSTDERR: JPNTR(J+1) = JPNTR(J) + IWA(J) BUILDSTDERR: 1 BUILDSTDERR: Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) BUILDSTDERR: portsrc.f:5780:21: BUILDSTDERR: portsrc.f:5773:72: BUILDSTDERR: DO 80 JCOL = 2, N BUILDSTDERR: 2 BUILDSTDERR: portsrc.f:5780:21: BUILDSTDERR: JPL = JPNTR(JCOL) BUILDSTDERR: 1 BUILDSTDERR: Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) BUILDSTDERR: portsrc.f:5781:21: BUILDSTDERR: portsrc.f:5773:72: BUILDSTDERR: DO 80 JCOL = 2, N BUILDSTDERR: 2 BUILDSTDERR: portsrc.f:5781:21: BUILDSTDERR: JPU = JPNTR(JCOL+1) - 1 BUILDSTDERR: 1 BUILDSTDERR: Warning: Array reference at (1) out of bounds (3 > 1) in loop beginning at (2) BUILDSTDERR: portsrc.f:6390:34: BUILDSTDERR: DO 20 IR = 1, M BUILDSTDERR: 2 BUILDSTDERR: MAXLST = MAXLST + (IPNTR(IR+1) - IPNTR(IR))**2 BUILDSTDERR: 1 BUILDSTDERR: Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) BUILDSTDERR: portsrc.f:11119:21: BUILDSTDERR: portsrc.f:11117:72: BUILDSTDERR: DO 70 J = 1, N BUILDSTDERR: 2 BUILDSTDERR: portsrc.f:11119:21: BUILDSTDERR: JPU = JPNTR(J+1) - 1 BUILDSTDERR: 1 BUILDSTDERR: Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) BUILDSTDERR: portsrc.f:11147:36: BUILDSTDERR: DO 80 I = 1, M BUILDSTDERR: 2 BUILDSTDERR: MINGRP = MAX0(MINGRP,IPNTR(I+1)-IPNTR(I)) BUILDSTDERR: 1 BUILDSTDERR: Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) BUILDSTDERR: portsrc.f:6413:0: BUILDSTDERR: LIST(JCOL) = NUMORD BUILDSTDERR: BUILDSTDERR: Warning: 'jcol' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: portsrc.f:5328:0: BUILDSTDERR: IF (ALPHAK .LE. ZERO .OR. ALPHAK .LT. LK .OR. ALPHAK .GE. UK) BUILDSTDERR: BUILDSTDERR: Warning: 'alphak' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: portsrc.f:5463:0: BUILDSTDERR: IF (ALPHAK .GE. TWOPSI*PSIFAC) GO TO 310 BUILDSTDERR: BUILDSTDERR: Warning: 'psifac' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: portsrc.f:10090:0: BUILDSTDERR: V(PREDUC) = HALF * (DABS(ALPHAK)*DST*DST + GTSTA) BUILDSTDERR: BUILDSTDERR: Warning: 'gtsta' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: portsrc.f:10008:0: BUILDSTDERR: IF (-V(DST0) .GE. ALPHAK .OR. ALPHAK .LT. LK .OR. ALPHAK .GE. UK) BUILDSTDERR: BUILDSTDERR: Warning: 'alphak' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: portsrc.f:10003:0: BUILDSTDERR: LK = DMAX1(LK, PHI*W(PHIPIN)) BUILDSTDERR: BUILDSTDERR: Warning: 'phi' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: portsrc.f:10144:0: BUILDSTDERR: IF (KA .GE. KAMIN) GO TO 340 BUILDSTDERR: BUILDSTDERR: Warning: 'kamin' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: portsrc.f:11900:0: BUILDSTDERR: V(NREDUC) = NRED BUILDSTDERR: BUILDSTDERR: Warning: 'nred' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: portsrc.f:11903:0: BUILDSTDERR: V(DST0) = DNWTST BUILDSTDERR: BUILDSTDERR: Warning: 'dnwtst' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: portsrc.f:2390:0: BUILDSTDERR: V(NREDUC) = NRED BUILDSTDERR: BUILDSTDERR: Warning: 'nred' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: portsrc.f:2389:0: BUILDSTDERR: 60 V(DST0) = DS0 BUILDSTDERR: BUILDSTDERR: Warning: 'ds0' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: portsrc.f:7892:0: BUILDSTDERR: V(NREDUC) = NRED BUILDSTDERR: BUILDSTDERR: Warning: 'nred' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: portsrc.f:7891:0: BUILDSTDERR: 90 V(DST0) = DS0 BUILDSTDERR: BUILDSTDERR: Warning: 'ds0' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: portsrc.f:8370:0: BUILDSTDERR: 210 IV(FDH) = HES BUILDSTDERR: BUILDSTDERR: Warning: 'hes' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: portsrc.f:3456:0: BUILDSTDERR: IF (LIV .LT. MIV2) GO TO 300 BUILDSTDERR: BUILDSTDERR: Warning: 'miv2' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: portsrc.f:11737:0: BUILDSTDERR: 270 CALL DITSUM(D, V(G1), IV, LIV, LV, P, V, X) BUILDSTDERR: BUILDSTDERR: Warning: 'g1' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: portsrc.f:440:0: BUILDSTDERR: 300 CALL DITSUM(D, V(G1), IV, LIV, LV, P, V, X) BUILDSTDERR: BUILDSTDERR: Warning: 'g1' may be used uninitialized in this function [-Wmaybe-uninitialized] gfortran -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c lminfl.f -o lminfl.o gcc -shared -L../../../../lib -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -L../../../../lib -lRlapack -L../../../../lib -lRblas -L -L -lgfortran -lm -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/stats/src' mkdir -p -- ../../../../library/stats/libs make[6]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/stats/src' make[5]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/stats/src' make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/stats' make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/stats' byte-compiling package 'stats' make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/stats' make[3]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/stats' make[3]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/datasets' building package 'datasets' mkdir -p -- ../../../library/datasets make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/datasets' make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/datasets' mkdir -p -- ../../../library/datasets/data make[3]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/datasets' make[3]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/methods' building package 'methods' mkdir -p -- ../../../library/methods make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/methods' mkdir -p -- ../../../library/methods/R make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/methods' make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/methods' make[5]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/methods/src' making do_substitute_direct.d from do_substitute_direct.c making init.d from init.c making methods_list_dispatch.d from methods_list_dispatch.c making slot.d from slot.c making class_support.d from class_support.c making tests.d from tests.c making utils.d from utils.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c do_substitute_direct.c -o do_substitute_direct.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c methods_list_dispatch.c -o methods_list_dispatch.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c slot.c -o slot.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c class_support.c -o class_support.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c tests.c -o tests.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c utils.c -o utils.o gcc -shared -L../../../../lib -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/methods/src' mkdir -p -- ../../../../library/methods/libs make[6]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/methods/src' make[5]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/methods/src' make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/methods' make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/methods' byte-compiling 'methods' initializing class and method definitions ... done make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/methods' make[3]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/methods' make[3]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/grid' building package 'grid' mkdir -p -- ../../../library/grid mkdir -p -- ../../../library/grid/doc make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/grid' mkdir -p -- ../../../library/grid/R make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/grid' make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/grid' make[5]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/grid/src' making gpar.d from gpar.c making grid.d from grid.c making just.d from just.c making layout.d from layout.c making matrix.d from matrix.c making register.d from register.c making state.d from state.c making unit.d from unit.c making util.d from util.c making viewport.d from viewport.c gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c gpar.c -o gpar.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c grid.c -o grid.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c just.c -o just.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c layout.c -o layout.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c matrix.c -o matrix.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c register.c -o register.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c state.c -o state.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c unit.c -o unit.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util.c -o util.o gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c viewport.c -o viewport.o gcc -shared -L../../../../lib -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o grid.so gpar.o grid.o just.o layout.o matrix.o register.o state.o unit.o util.o viewport.o -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/grid/src' mkdir -p -- ../../../../library/grid/libs make[6]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/grid/src' make[5]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/grid/src' make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/grid' make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/grid' byte-compiling package 'grid' make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/grid' make[3]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/grid' make[3]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/splines' building package 'splines' mkdir -p -- ../../../library/splines make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/splines' mkdir -p -- ../../../library/splines/R make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/splines' make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/splines' make[5]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/splines/src' making splines.d from splines.c gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c splines.c -o splines.o gcc -shared -L../../../../lib -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o splines.so splines.o -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/splines/src' mkdir -p -- ../../../../library/splines/libs make[6]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/splines/src' make[5]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/splines/src' make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/splines' make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/splines' byte-compiling package 'splines' make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/splines' make[3]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/splines' make[3]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/stats4' building package 'stats4' mkdir -p -- ../../../library/stats4 make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/stats4' mkdir -p -- ../../../library/stats4/R make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/stats4' make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/stats4' byte-compiling package 'stats4' make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/stats4' make[3]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/stats4' make[3]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/tcltk' building package 'tcltk' mkdir -p -- ../../../library/tcltk/R make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/tcltk' mkdir -p -- ../../../library/tcltk/exec make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/tcltk' make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/tcltk/src' making init.d from init.c making tcltk.d from tcltk.c making tcltk_unix.d from tcltk_unix.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include -I/usr/include -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include -I/usr/include -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c tcltk.c -o tcltk.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include -I/usr/include -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c tcltk_unix.c -o tcltk_unix.o gcc -shared -L../../../../lib -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/lib64 -ltcl8.6 -L/usr/lib64 -ltk8.6 -lX11 -lm -L../../../../lib -lR make[5]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/tcltk/src' mkdir -p -- ../../../../library/tcltk/libs make[5]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/tcltk/src' make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/tcltk/src' make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/tcltk' byte-compiling package 'tcltk' make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/tcltk' make[3]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/tcltk' make[3]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/parallel' building package 'parallel' mkdir -p -- ../../../library/parallel mkdir -p -- ../../../library/parallel/doc make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/parallel' mkdir -p -- ../../../library/parallel/R make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/parallel' make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/parallel' make[5]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/parallel/src' making init.d from init.c making rngstream.d from rngstream.c making fork.d from fork.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rngstream.c -o rngstream.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c fork.c -o fork.o gcc -shared -L../../../../lib -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR make[6]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/parallel/src' mkdir -p -- ../../../../library/parallel/libs make[6]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/parallel/src' make[5]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/parallel/src' make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/parallel' make[4]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/parallel' byte-compiling package 'parallel' make[4]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/parallel' make[3]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/parallel' make[3]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/base' make[3]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/base' installing parsed NAMESPACE files make[2]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library' make[1]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src' make[1]: Entering directory '/builddir/build/BUILD/R-3.5.0/tests' make[1]: Nothing to be done for 'R'. make[1]: Leaving directory '/builddir/build/BUILD/R-3.5.0/tests' you should 'make docs' now ... make[1]: Entering directory '/builddir/build/BUILD/R-3.5.0/doc' creating doc/NEWS creating doc/NEWS.pdf make[2]: Entering directory '/builddir/build/BUILD/R-3.5.0/doc/manual' creating doc/manual/R-FAQ.html creating doc/manual/version.texi creating doc/manual/R-admin.html creating doc/manual/R-data.html creating doc/manual/R-exts.html creating doc/manual/R-intro.html creating doc/manual/R-ints.html creating doc/manual/R-lang.html make[3]: Entering directory '/builddir/build/BUILD/R-3.5.0/doc/html' make[3]: Leaving directory '/builddir/build/BUILD/R-3.5.0/doc/html' make[2]: Leaving directory '/builddir/build/BUILD/R-3.5.0/doc/manual' make[1]: Leaving directory '/builddir/build/BUILD/R-3.5.0/doc' make[1]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library' make[2]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library' installing parsed Rd make[3]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library' base stats utils methods graphics grDevices datasets grid tools tcltk splines stats4 compiler parallel make[3]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library' make[2]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library' make[2]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library' building/updating package metadata ... make[2]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library' make[2]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library' writing package indices make[3]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library' make[3]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library' make[2]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library' make[2]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library' building all R object docs converting help for package 'base' Arithmetic html Rd warning: /builddir/build/BUILD/R-3.5.0/src/library/base/man/Arithmetic.Rd:158: file link 'Ops' in package 'base' does not exist and so has been treated as a topic AsIs html Bessel html CallExternal html Colon html Comparison html Rd warning: /builddir/build/BUILD/R-3.5.0/src/library/base/man/Comparison.Rd:101: file link 'Ops' in package 'base' does not exist and so has been treated as a topic Constants html Control html Cstack_info html DateTimeClasses html Dates html Defunct html Deprecated html Encoding html EnvVar html Extract html Extract.data.frame html Extract.factor html Extremes html Foreign-internal html Foreign html Hyperbolic html ISOdatetime html Internal html InternalMethods html La_library html La_version html Last.value html Log html Logic html Rd warning: /builddir/build/BUILD/R-3.5.0/src/library/base/man/Logic.Rd:110: file link 'Ops' in package 'base' does not exist and so has been treated as a topic LongVectors html MathFun html Memory-limits html Memory html NA html NULL html NumericConstants html Ops.Date html Paren html Platform html Primitive html Quotes html Random-user html Random html RdUtils html Recall html Reserved html Rhome html Round html Special html Startup html Syntax html Sys.getenv html Sys.getpid html Sys.glob html Sys.info html Sys.localeconv html Sys.readlink html Sys.setFileTime html Sys.setenv html Sys.sleep html Sys.time html Sys.which html Trig html UseMethod html Vectorize html Version html abbreviate html agrep html all html all.equal html allnames html any html aperm html append html apply html args html array html as.Date html as.POSIXlt html Rd warning: 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html dcf html debug html Rd warning: /builddir/build/BUILD/R-3.5.0/src/library/base/man/debug.Rd:73: file link 'isRematched' in package 'methods' does not exist and so has been treated as a topic delayedAssign html deparse html deparseOpts html det html detach html dev html diag html diff html difftime html dim html dimnames html do.call html dontCheck html dots html double html dput html drop html droplevels html dump html duplicated html dynload html eapply html eigen html encodeString html environment html eval html exists html expand.grid html expression html extSoftVersion html factor html file.access html file.choose html file.info html file.path html file.show html files html files2 html find.package html findInterval html force html forceAndCall html formals html format html format.info html format.pval html formatDL html formatc html function html funprog html gc html gc.time html gctorture html get html getCallingDLL html getDLLRegisteredRoutines html getLoadedDLLs html getNativeSymbolInfo html gettext html getwd html gl html grep html grepRaw html groupGeneric html grouping html gzcon html hexmode html iconv html icuSetCollate html identical html identity html ifelse html integer html interaction html interactive html invisible html is.finite html is.function html is.language html is.object html is.recursive html is.single html is.unsorted html isR html isS4 html isSymmetric html jitter html kappa html kronecker html l10n_info html labels html lapply html lazyload html length html lengths html levels html libPaths html libcurlVersion html library html library.dynam html license html list html list.files html list2env html load html locales html logical html lower.tri html ls html make.names html make.unique html mapply html margin.table html mat.or.vec html match html match.arg html match.call html match.fun html matmult html matrix html maxCol html mean html memCompress html memory.profile html merge html message html missing html mode html name html names html nargs html nchar html nlevels html noquote html norm html normalizePath html notyet html nrow html ns-dblcolon html ns-hooks html ns-internal html ns-load html ns-reflect html ns-topenv html numeric html numeric_version html octmode html on.exit html options html order html outer html parse html paste html path.expand html pcre_config html pmatch html polyroot html pos.to.env html pretty html print html Rd warning: /builddir/build/BUILD/R-3.5.0/src/library/base/man/print.Rd:86: file link '.print.via.format' in package 'tools' does not exist and so has been treated as a topic print.dataframe html print.default html prmatrix html proc.time html prod html prop.table html pushBack html qr html qraux html quit html range html rank html rapply html raw html rawConnection html rawConversion html readBin html readChar html readLines html readRDS html readRenviron html readline html reg.finalizer html regex html regmatches html rep html replace html rev html rle html rm html round.POSIXt html row html row.names html rowsum html sQuote html sample html save html scale html scan html search html seek html seq.Date html seq.POSIXt html seq html sequence html serialize html setTimeLimit html sets html shQuote html showConnections html sign html sink html slice.index html slotOp html socketSelect html solve html sort html source html split html sprintf html srcfile html standardGeneric html startsWith html stop html stopifnot html strptime html strrep html strsplit html strtoi html strtrim html structure html strwrap html subset html substitute html substr html sum html summary html svd html sweep html switch html sys.parent html sys.source html system html system.file html system.time html system2 html t html table html tabulate html tapply html taskCallback html taskCallbackManager html taskCallbackNames html tempfile html textconnections html tilde html timezones html toString html trace html traceback html tracemem html transform html trimws html try html typeof html unique html unlink html unlist html unname html userhooks html utf8Conversion html validUTF8 html vector html warning html warnings html weekday.POSIXt html which html which.min html with html withVisible html write html writeLines html xtfrm html zMachine html zScript html zapsmall html zpackages html zutils html Signals html converting help for package 'tools' CRANtools html HTMLheader html HTMLlinks html QC html Rcmd html Rd2HTML html Rd2txt_options html RdTextFilter html Rdiff html Rdindex html Rdutils html SweaveTeXFilter html add_datalist html assertCondition html bibstyle html buildVignette html buildVignettes html charsets html checkFF html checkMD5sums html checkPoFiles html checkRd html checkRdaFiles html checkTnF html checkVignettes html check_packages_in_dir html Rd warning: /builddir/build/BUILD/R-3.5.0/src/library/tools/man/check_packages_in_dir.Rd:121: file link 'parLapply' in package 'parallel' does not exist and so has been treated as a topic codoc html compactPDF html delimMatch html dependsOnPkgs html encoded html fileutils html find_gs_cmd html getVignetteInfo html loadRdMacros html makeLazyLoading html make_translations_pkg html makevars html md5sum html package_dependencies html package_native_routine_registration_skeleton html parseLatex html parse_Rd html print.via.format html pskill html psnice html read.00Index html showNonASCII html startDynamicHelp html testInstalledPackage html texi2dvi html toHTML html toRd html toTitleCase html tools-defunct html tools-deprecated html tools-package html undoc html update_pkg_po html vignetteDepends html vignetteEngine html writePACKAGES html xgettext html converting help for package 'utils' BATCH html INSTALL html PkgUtils html Question html REMOVE html RHOME html RShowDoc html RSiteSearch html Rprof html Rprofmem html Rscript html Rtangle html RweaveLatex html SHLIB html Sweave html SweaveSyntConv html SweaveUtils html URLencode html View html adist html alarm html apropos html aregexec html askYesNo html aspell-utils html aspell html available.packages html bibentry html browseEnv html browseURL html browseVignettes html bug.report html capture.output html changedFiles html chooseBioCmirror html chooseCRANmirror html citEntry html citation html cite html close.socket html combn html compareVersion html contrib.url html count.fields html create.post html data html dataentry html debugcall html debugger html demo html download.file html download.packages html edit html edit.data.frame html example html file.edit html filetest html findLineNum html fix html flush.console html format html getAnywhere html getFromNamespace html getParseData html getS3method html glob2rx html globalVariables html hasName html head html help html help.request html help.search html help.start html hsearch-utils html install.packages html installed.packages html isS3method html isS3stdGen html localeToCharset html ls_str html maintainer html make.packages.html html make.socket html menu html methods html mirrorAdmin html modifyList html news html object.size html package.skeleton html packageDescription html packageName html packageStatus html page html person html process.events html prompt html promptData html promptPackage html rcompgen html read.DIF html read.fortran html read.fwf html read.socket html read.table html recover html relist html remove.packages html removeSource html roman html rtags html savehistory html select.list html sessionInfo html setRepositories html sourceutils html stack html str html strcapture html summaryRprof html tar html toLatex html txtProgressBar html type.convert html untar html unzip html update.packages html url.show html utils-defunct html utils-deprecated html utils-package html vignette html warnErrList html write.table html zip html COMPILE html LINK html memory.size html nsl html converting help for package 'grDevices' Devices html Hershey html Japanese html Type1Font html adjustcolor html as.graphicsAnnot html as.raster html axisTicks html boxplot.stats html cairo html check.options html chull html cm html col2rgb html colorRamp html colors html contourLines html convertColor html densCols html dev html dev.capabilities html dev.capture html dev.flush html dev.interactive html dev.size html dev2 html dev2bitmap html devAskNewPage html embedFonts html extendrange html getGraphicsEvent html grDevices-package html grSoftVersion html gray html gray.colors html hcl html hsv html make.rgb html n2mfrow html nclass html palette html palettes html pdf html pdf.options html pictex html plotmath html postscript html postscriptFonts html pretty.Date html ps.options html recordGraphics html recordplot html rgb html rgb2hsv html trans3d html xfig html xy.coords html xyTable html xyz.coords html png html quartz html quartzFonts html savePlot html x11 html x11Fonts html converting help for package 'graphics' abline html arrows html assocplot html axTicks html axis.POSIXct html axis html barplot html box html boxplot html boxplot.matrix html bxp html cdplot html clip html contour html convertXY html coplot html curve html dotchart html filled.contour html fourfoldplot html frame html graphics-defunct html graphics-package html grid html hist.POSIXt html hist html identify html image html layout html legend html lines html locator html matplot html mosaicplot html mtext html pairs html panel.smooth html par html persp html pie html plot html plot.dataframe html plot.default html plot.design html plot.factor html plot.formula html plot.raster html plot.table html plot.window html plot.xy html plothistogram html points html polygon html polypath html rasterImage html rect html rug html screen html segments html smoothScatter html spineplot html stars html stem html stripchart html strwidth html sunflowerplot html symbols html text html title html units html xspline html zAxis html converting help for package 'stats' AIC html ARMAacf html ARMAtoMA html Beta html Binomial html Cauchy html Chisquare html Distributions html Exponential html Fdist html GammaDist html Geometric html HoltWinters html Hypergeometric html IQR html KalmanLike html Logistic html Lognormal html Multinom html NLSstAsymptotic html NLSstClosestX html NLSstLfAsymptote html NLSstRtAsymptote html NegBinomial html Normal html Poisson html SSD html SSasymp html SSasympOff html SSasympOrig html SSbiexp html SSfol html SSfpl html SSgompertz html SSlogis html SSmicmen html SSweibull html SignRank html StructTS html TDist html Tukey html TukeyHSD html Uniform html Weibull html Wilcoxon html acf html acf2AR html add1 html addmargins html aggregate html alias html anova html anova.glm html anova.lm html anova.mlm html ansari.test html aov html approxfun html ar html ar.ols html arima html arima.sim html arima0 html as.hclust html asOneSidedFormula html ave html bandwidth html bartlett.test html binom.test html biplot html biplot.princomp html birthday html box.test html cancor html case.names html checkMFClasses html chisq.test html cmdscale html coef html complete.cases html confint html constrOptim html contrast html contrasts html convolve html cophenetic html cor html cor.test html cov.wt html cpgram html cutree html decompose html delete.response html dendrapply html dendrogram html density html deriv html deviance html df.residual html diffinv html dist html dummy.coef html ecdf html eff.aovlist html effects html embed html expand.model.frame html extractAIC html factanal html factor.scope html family html fft html filter html fisher.test html fitted.values html fivenum html fligner.test html formula html formula.nls html friedman.test html ftable html ftable.formula html getInitial html glm html glm.control html glm.summaries html hclust html heatmap html identify.hclust html influence.measures html integrate html interaction.plot html is.empty html isoreg html kernapply html kernel html kmeans html kruskal.test html ks.test html ksmooth html lag html lag.plot html line html listof html lm html lm.influence html lm.summaries html lmfit html loadings html loess html loess.control html logLik html loglin html lowess html ls.diag html ls.print html lsfit html mad html mahalanobis html make.link html makepredictcall html manova html mantelhaen.test html mauchly.test html mcnemar.test html median html medpolish html model.extract html model.frame html model.matrix html model.tables html monthplot html mood.test html na.action html na.contiguous html na.fail html nafns html naprint html nextn html nlm html nlminb html nls html nls.control html nobs html numericDeriv html offset html oneway.test html optim html optimize html order.dendrogram html p.adjust html pairwise.prop.test html pairwise.t.test html pairwise.table html pairwise.wilcox.test html plot.HoltWinters html plot.acf html plot.density html plot.isoreg html plot.lm html plot.ppr html plot.profile.nls html plot.spec html plot.stepfun html plot.ts html poisson.test html poly html power html power.anova.test html power.prop.test html power.t.test html pp.test html ppoints html ppr html prcomp html predict.HoltWinters html predict html predict.arima html predict.glm html predict.lm html predict.loess html predict.nls html predict.smooth.spline html preplot html princomp html print.power.htest html print.ts html printCoefmat html profile html profile.nls html proj html prop.test html prop.trend.test html qqnorm html quade.test html quantile html r2dtable html rWishart html read.ftable html rect.hclust html relevel html reorder.dendrogram html reorder.factor html replications html reshape html residuals html runmed html scatter.smooth html screeplot html sd html se.contrast html selfStart html setNames html shapiro.test html sigma html simulate html smooth html smooth.spline html smoothEnds html sortedXyData html spec.ar html spec.pgram html spec.taper html spectrum html splinefun html start html stat.anova html stats-defunct html stats-deprecated html stats-package html step html stepfun html stl html stlmethods html summary.aov html summary.glm html summary.lm html summary.manova html summary.nls html summary.princomp html supsmu html symnum html t.test html termplot html terms html terms.formula html terms.object html time html toeplitz html ts-methods html ts html ts.plot html ts.union html tsSmooth html tsdiag html tsp html uniroot html update html update.formula html var.test html varimax html vcov html weighted.mean html weighted.residuals html weights html wilcox.test html window html xtabs html zC html converting help for package 'datasets' AirPassengers html BJsales html BOD html ChickWeight html DNase html EuStockMarkets html Formaldehyde html HairEyeColor html Harman23.cor html Harman74.cor html Indometh html InsectSprays html JohnsonJohnson html LakeHuron html LifeCycleSavings html Loblolly html Nile html Orange html OrchardSprays html PlantGrowth html Puromycin html Theoph html Titanic html ToothGrowth html UCBAdmissions html UKDriverDeaths html UKLungDeaths html UKgas html USAccDeaths html USArrests html USJudgeRatings html USPersonalExpenditure html VADeaths html WWWusage html WorldPhones html ability.cov html airmiles html airquality html anscombe html attenu html attitude html austres html beavers html cars html chickwts html co2 html crimtab html datasets-package html discoveries html esoph html euro html eurodist html faithful html freeny html infert html iris html islands html lh html longley html lynx html morley html mtcars html nhtemp html nottem html npk html occupationalStatus html precip html presidents html pressure html quakes html randu html rivers html rock html sleep html stackloss html state html sunspot.month html sunspot.year html sunspots html swiss html treering html trees html uspop html volcano html warpbreaks html women html zCO2 html converting help for package 'methods' BasicClasses html Classes html Classes_Details html Documentation html EmptyMethodsList-class html EnvironmentClass html GenericFunctions html Introduction html LanguageClasses html LinearMethodsList-class html MethodDefinition-class html MethodSupport html MethodWithNext-class html Methods html MethodsList-class html MethodsList html Methods_Details html Methods_for_Nongenerics html Methods_for_S3 html NextMethod html ObjectsWithPackage-class html RClassUtils html RMethodUtils html S3Part html S4groupGeneric html SClassExtension-class html StructureClasses html TraceClasses html as html callGeneric html canCoerce html cbind2 html className html classRepresentation-class html classesToAM html dotsMethods html evalSource html findClass html findMethods html fixPrevious html genericFunction-class html getClass html getMethod html getPackageName html hasArg html implicitGeneric html inheritedSlotNames html initialize-methods html is html isSealedMethod html languageEl html localRefClass html method.skeleton html methodUtilities html methods-defunct html methods-deprecated html methods-package html new html nonStructure-class html promptClass html promptMethods html refClass html removeMethod html representation html selectSuperClasses html setAs html setClass html setClassUnion html setGeneric html setGroupGeneric html setIs html setLoadActions html setMethod html setOldClass html setSClass html show html showMethods html signature-class html slot html stdRefClass html substituteDirect html testInheritedMethods html validObject html zBasicFunsList html converting help for package 'grid' Grid html absolute.size html arrow html calcStringMetric html current.viewport html dataViewport html depth html drawDetails html editDetails html explode html gEdit html gPath html getNames html gpar html grid-defunct html grid-internal html grid-package html grid.DLapply html grid.add html grid.bezier html grid.cap html grid.circle html grid.clip html grid.convert html grid.copy html grid.curve html grid.delay html grid.display.list html grid.draw html grid.edit html grid.force html grid.frame html grid.function html grid.get html grid.grab html grid.grep html grid.grill html grid.grob html grid.layout html grid.lines html grid.locator html grid.ls html grid.move.to html grid.newpage html grid.null html grid.pack html grid.path html grid.place html grid.plot.and.legend html grid.points html grid.polygon html grid.pretty html grid.raster html grid.record html grid.rect html grid.refresh html grid.remove html grid.reorder html grid.roundrect html grid.segments html grid.set html grid.show.layout html grid.show.viewport html grid.text html grid.xaxis html grid.xspline html grid.yaxis html grobName html grobWidth html grobX html legendGrob html makeContent html plotViewport html resolveRasterSize html showGrob html showViewport html stringWidth html unit html unit.c html unit.length html unit.pmin html unit.rep html valid.just html validDetails html viewport html viewports html vpPath html widthDetails html xDetails html xsplinePoints html converting help for package 'splines' asVector html backSpline html bs html interpSpline html ns html periodicSpline html polySpline html predict.bSpline html predict.bs html splineDesign html splineKnots html splineOrder html splines-package html xyVector html converting help for package 'stats4' coef-methods html confint-methods html logLik-methods html mle-class html mle html plot-methods html profile-methods html profile.mle-class html show-methods html stats4-package html summary-methods html summary.mle-class html update-methods html vcov-methods html converting help for package 'tcltk' TclInterface html TkCommands html TkWidgetcmds html TkWidgets html tclServiceMode html tcltk-defunct html tcltk-package html tkProgressBar html tkStartGUI html tk_choose.dir html tk_choose.files html tk_messageBox html tk_select.list html tkpager html converting help for package 'compiler' compile html converting help for package 'parallel' RngStream html clusterApply html detectCores html makeCluster html parallel-package html splitIndices html children html mcaffinity html mcfork html mclapply html mcparallel html pvec html make[2]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library' make[1]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library' make[1]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/Recommended' make[2]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library/Recommended' begin installing recommended package MASS * installing *source* package 'MASS' ... ** package 'MASS' successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory '/tmp/Rtmp5WMpmY/R.INSTALL45214777d19/MASS/src' gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c MASS.c -o MASS.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c lqs.c -o lqs.o gcc -shared -L/builddir/build/BUILD/R-3.5.0/lib -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o MASS.so MASS.o lqs.o -L/builddir/build/BUILD/R-3.5.0/lib -lR make[3]: Leaving directory '/tmp/Rtmp5WMpmY/R.INSTALL45214777d19/MASS/src' installing to /builddir/build/BUILD/R-3.5.0/library/MASS/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'MASS' finding HTML links ... done Aids2 html Animals html Boston html Cars93 html Cushings html DDT html GAGurine html Insurance html MASS-internal html Melanoma html Null html OME html Pima.tr html Rabbit html Rubber html SP500 html Sitka html Sitka89 html Skye html Traffic html UScereal html UScrime html VA html abbey html accdeaths html addterm html anorexia html anova.negbin html area html bacteria html bandwidth.nrd html bcv html beav1 html beav2 html biopsy html birthwt html boxcox html cabbages html caith html cats html cement html chem html con2tr html confint html contr.sdif html coop html corresp html cov.rob html cov.trob html cpus html crabs html deaths html denumerate html dose.p html drivers html dropterm html eagles html epil html eqscplot html farms html fgl html fitdistr html forbes html fractions html galaxies html gamma.dispersion html gamma.shape.glm html gehan html genotype html geyser html gilgais html ginv html glm.convert html glm.nb html glmmPQL html hills html hist.scott html housing html huber html hubers html immer html isoMDS html kde2d html lda html ldahist html leuk html lm.gls html lm.ridge html loglm html loglm1 html logtrans html lqs html mammals html mca html mcycle html menarche html michelson html minn38 html motors html muscle html mvrnorm html negative.binomial html newcomb html nlschools html npk html npr1 html oats html painters html pairs.lda html parcoord html petrol html phones html plot.lda html plot.mca html plot.profile html polr html predict.glmmPQL html predict.lda html predict.lqs html predict.mca html predict.qda html profile.glm html qda html quine html rational html renumerate html rlm html rms.curv html rnegbin html road html rotifer html sammon html ships html shoes html shrimp html shuttle html snails html stdres html steam html stepAIC html stormer html studres html summary.loglm html summary.negbin html summary.rlm html survey html synth.tr html theta.md html topo html truehist html ucv html waders html whiteside html width.SJ html write.matrix html wtloss html ** building package indices ** testing if installed package can be loaded * DONE (MASS) Making 'packages.html' ... done begin installing recommended package lattice * installing *source* package 'lattice' ... ** package 'lattice' successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory '/tmp/RtmpAxkkoK/R.INSTALL46f5df8a08a/lattice/src' gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c threeDplot.c -o threeDplot.o gcc -shared -L/builddir/build/BUILD/R-3.5.0/lib -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o lattice.so init.o threeDplot.o -L/builddir/build/BUILD/R-3.5.0/lib -lR make[3]: Leaving directory '/tmp/RtmpAxkkoK/R.INSTALL46f5df8a08a/lattice/src' installing to /builddir/build/BUILD/R-3.5.0/library/lattice/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'lattice' finding HTML links ... done Lattice html Rows html USMortality html axis.default html banking html barchart.table html barley html cloud html draw.colorkey html draw.key html environmental html ethanol html histogram html interaction html lattice.options html latticeParseFormula html level.colors html levelplot html llines html lset html make.groups html melanoma html oneway html packet.panel.default html panel.axis html panel.barchart html panel.bwplot html panel.cloud html panel.densityplot html panel.dotplot html panel.functions html panel.histogram html panel.levelplot html panel.loess html panel.number html panel.pairs html panel.parallel html panel.qqmath html panel.qqmathline html panel.smoothScatter html panel.spline html panel.stripplot html panel.superpose html panel.violin html panel.xyplot html prepanel.default html prepanel.functions html print.trellis html qq html qqmath html rfs html shingles html simpleKey html simpleTheme html singer html splom html strip.default html tmd html trellis.device html trellis.object html trellis.par.get html update.trellis html utilities.3d html xyplot html xyplot.ts html ** building package indices ** testing if installed package can be loaded * DONE (lattice) Making 'packages.html' ... done begin installing recommended package Matrix * installing *source* package 'Matrix' ... ** package 'Matrix' successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory '/tmp/RtmpMzZb3b/R.INSTALL48b6938c2f7/Matrix/src' gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c CHMfactor.c -o CHMfactor.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c Csparse.c -o Csparse.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c TMatrix_as.c -o TMatrix_as.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c Tsparse.c -o Tsparse.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c Mutils.c -o Mutils.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c chm_common.c -o chm_common.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c cs.c -o cs.o cs.c: In function 'cs_qr': cs.c:1408:18: warning: variable 'm' set but not used [-Wunused-but-set-variable] csi i, k, p, m, n, vnz, p1, top, m2, len, col, rnz, *s, *leftmost, *Ap, *Ai, ^ gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c cs_utils.c -o cs_utils.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dense.c -o dense.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dgCMatrix.c -o dgCMatrix.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dgTMatrix.c -o dgTMatrix.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dgeMatrix.c -o dgeMatrix.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dpoMatrix.c -o dpoMatrix.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dppMatrix.c -o dppMatrix.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dsCMatrix.c -o dsCMatrix.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dsyMatrix.c -o dsyMatrix.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dspMatrix.c -o dspMatrix.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dtCMatrix.c -o dtCMatrix.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dtTMatrix.c -o dtTMatrix.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dtrMatrix.c -o dtrMatrix.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dtpMatrix.c -o dtpMatrix.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c factorizations.c -o factorizations.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ldense.c -o ldense.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c lgCMatrix.c -o lgCMatrix.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c sparseQR.c -o sparseQR.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c abIndex.c -o abIndex.o make[4]: Entering directory '/tmp/RtmpMzZb3b/R.INSTALL48b6938c2f7/Matrix/src/CHOLMOD' ( cd Lib ; make clean ) make[5]: Entering directory '/tmp/RtmpMzZb3b/R.INSTALL48b6938c2f7/Matrix/src/CHOLMOD/Lib' make[5]: Leaving directory '/tmp/RtmpMzZb3b/R.INSTALL48b6938c2f7/Matrix/src/CHOLMOD/Lib' make[4]: Leaving directory '/tmp/RtmpMzZb3b/R.INSTALL48b6938c2f7/Matrix/src/CHOLMOD' make[4]: Entering directory '/tmp/RtmpMzZb3b/R.INSTALL48b6938c2f7/Matrix/src/COLAMD' ( cd Source ; make clean ) make[5]: Entering directory '/tmp/RtmpMzZb3b/R.INSTALL48b6938c2f7/Matrix/src/COLAMD/Source' make[5]: Leaving directory '/tmp/RtmpMzZb3b/R.INSTALL48b6938c2f7/Matrix/src/COLAMD/Source' make[4]: Leaving directory '/tmp/RtmpMzZb3b/R.INSTALL48b6938c2f7/Matrix/src/COLAMD' make[4]: Entering directory '/tmp/RtmpMzZb3b/R.INSTALL48b6938c2f7/Matrix/src/AMD' ( cd Source ; make clean ) make[5]: Entering directory '/tmp/RtmpMzZb3b/R.INSTALL48b6938c2f7/Matrix/src/AMD/Source' make[5]: Leaving directory '/tmp/RtmpMzZb3b/R.INSTALL48b6938c2f7/Matrix/src/AMD/Source' make[4]: Leaving directory '/tmp/RtmpMzZb3b/R.INSTALL48b6938c2f7/Matrix/src/AMD' make[4]: Entering directory '/tmp/RtmpMzZb3b/R.INSTALL48b6938c2f7/Matrix/src/SuiteSparse_config' make[4]: Leaving directory '/tmp/RtmpMzZb3b/R.INSTALL48b6938c2f7/Matrix/src/SuiteSparse_config' make[4]: Entering directory '/tmp/RtmpMzZb3b/R.INSTALL48b6938c2f7/Matrix/src/CHOLMOD' ( cd Lib ; make -f "/builddir/build/BUILD/R-3.5.0/etc/Makeconf" -f Makefile ) make[5]: Entering directory '/tmp/RtmpMzZb3b/R.INSTALL48b6938c2f7/Matrix/src/CHOLMOD/Lib' gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../Core/cholmod_aat.c -o cholmod_aat.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../Core/cholmod_add.c -o cholmod_add.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../Core/cholmod_band.c -o cholmod_band.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../Core/cholmod_change_factor.c -o cholmod_change_factor.o In file included from ../Core/cholmod_change_factor.c:116: ../Core/t_cholmod_change_factor.c: In function 'r_change_simplicial_numeric': ../Core/t_cholmod_change_factor.c:40:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] double *Lx, *Lz ; ^~ In file included from ../Core/cholmod_change_factor.c:118: ../Core/t_cholmod_change_factor.c: In function 'c_change_simplicial_numeric': ../Core/t_cholmod_change_factor.c:40:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] double *Lx, *Lz ; ^~ ../Core/cholmod_change_factor.c: In function 'simplicial_symbolic_to_super_symbolic': ../Core/cholmod_change_factor.c:265:17: warning: variable 'xsize' set but not used [-Wunused-but-set-variable] Int nsuper, xsize, ssize ; ^~~~~ ../Core/cholmod_change_factor.c: In function 'change_simplicial_numeric': ../Core/cholmod_change_factor.c:680:15: warning: variable 'Li' set but not used [-Wunused-but-set-variable] Int *Lp, *Li, *Lnz ; ^~ ../Core/cholmod_change_factor.c:680:10: warning: variable 'Lp' set but not used [-Wunused-but-set-variable] Int *Lp, *Li, *Lnz ; ^~ ../Core/cholmod_change_factor.c:679:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] double *Lx, *Lz ; ^~ ../Core/cholmod_change_factor.c:679:13: warning: variable 'Lx' set but not used [-Wunused-but-set-variable] double *Lx, *Lz ; ^~ ../Core/cholmod_change_factor.c: In function 'll_super_to_simplicial_numeric': ../Core/cholmod_change_factor.c:827:9: warning: variable 'n' set but not used [-Wunused-but-set-variable] Int n, lnz, s, nsuper, psi, psend, nsrow, nscol, k1, k2, erows ; ^ ../Core/cholmod_change_factor.c:826:21: warning: variable 'Lpx' set but not used [-Wunused-but-set-variable] Int *Ls, *Lpi, *Lpx, *Super, *Li ; ^~~ ../Core/cholmod_change_factor.c:826:10: warning: variable 'Ls' set but not used [-Wunused-but-set-variable] Int *Ls, *Lpi, *Lpx, *Super, *Li ; ^~ gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../Core/cholmod_common.c -o cholmod_common.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../Core/cholmod_complex.c -o cholmod_complex.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../Core/cholmod_copy.c -o cholmod_copy.o ../Core/cholmod_copy.c: In function 'cholmod_copy': ../Core/cholmod_copy.c:278:25: warning: variable 'lo' set but not used [-Wunused-but-set-variable] Int nrow, ncol, up, lo, values, diag, astype ; ^~ ../Core/cholmod_copy.c:278:21: warning: variable 'up' set but not used [-Wunused-but-set-variable] Int nrow, ncol, up, lo, values, diag, astype ; ^~ gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../Core/cholmod_dense.c -o cholmod_dense.o In file included from ../Core/cholmod_dense.c:48: ../Core/t_cholmod_dense.c: In function 'p_cholmod_sparse_to_dense': ../Core/t_cholmod_dense.c:30:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Ax, *Xx, *Az, *Xz ; ^~ ../Core/t_cholmod_dense.c:30:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Xx, *Az, *Xz ; ^~ ../Core/t_cholmod_dense.c:30:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable] double *Ax, *Xx, *Az, *Xz ; ^~ In file included from ../Core/cholmod_dense.c:50: ../Core/t_cholmod_dense.c: In function 'r_cholmod_sparse_to_dense': ../Core/t_cholmod_dense.c:30:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Ax, *Xx, *Az, *Xz ; ^~ ../Core/t_cholmod_dense.c:30:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Xx, *Az, *Xz ; ^~ ../Core/t_cholmod_dense.c: In function 'r_cholmod_dense_to_sparse': ../Core/t_cholmod_dense.c:136:28: warning: variable 'Cz' set but not used [-Wunused-but-set-variable] double *Xx, *Cx, *Xz, *Cz ; ^~ ../Core/t_cholmod_dense.c:136:23: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Xx, *Cx, *Xz, *Cz ; ^~ ../Core/t_cholmod_dense.c: In function 'r_cholmod_copy_dense2': ../Core/t_cholmod_dense.c:229:28: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] double *Xx, *Xz, *Yx, *Yz ; ^~ ../Core/t_cholmod_dense.c:229:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Xx, *Xz, *Yx, *Yz ; ^~ In file included from ../Core/cholmod_dense.c:52: ../Core/t_cholmod_dense.c: In function 'c_cholmod_sparse_to_dense': ../Core/t_cholmod_dense.c:30:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Ax, *Xx, *Az, *Xz ; ^~ ../Core/t_cholmod_dense.c:30:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Xx, *Az, *Xz ; ^~ ../Core/t_cholmod_dense.c: In function 'c_cholmod_dense_to_sparse': ../Core/t_cholmod_dense.c:136:28: warning: variable 'Cz' set but not used [-Wunused-but-set-variable] double *Xx, *Cx, *Xz, *Cz ; ^~ ../Core/t_cholmod_dense.c:136:23: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Xx, *Cx, *Xz, *Cz ; ^~ ../Core/t_cholmod_dense.c: In function 'c_cholmod_copy_dense2': ../Core/t_cholmod_dense.c:229:28: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] double *Xx, *Xz, *Yx, *Yz ; ^~ ../Core/t_cholmod_dense.c:229:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Xx, *Xz, *Yx, *Yz ; ^~ ../Core/cholmod_dense.c: In function 'cholmod_eye': ../Core/cholmod_dense.c:303:15: warning: variable 'nz' set but not used [-Wunused-but-set-variable] Int i, n, nz ; ^~ ../Core/cholmod_dense.c:302:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Xx, *Xz ; ^~ gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../Core/cholmod_error.c -o cholmod_error.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../Core/cholmod_factor.c -o cholmod_factor.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../Core/cholmod_memory.c -o cholmod_memory.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../Core/cholmod_sparse.c -o cholmod_sparse.o ../Core/cholmod_sparse.c: In function 'cholmod_copy_sparse': ../Core/cholmod_sparse.c:488:35: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] Int p, pend, j, ncol, packed, nzmax, nz, xtype ; ^~~~~ gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../Core/cholmod_transpose.c -o cholmod_transpose.o In file included from ../Core/cholmod_transpose.c:124: ../Core/t_cholmod_transpose.c: In function 'p_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^~~~~~~ ../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^~~~~~~ ../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^~~~ ../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^~~ ../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^~ ../Core/t_cholmod_transpose.c:45:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ ../Core/t_cholmod_transpose.c:45:23: warning: variable 'Fx' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ ../Core/t_cholmod_transpose.c:45:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ ../Core/t_cholmod_transpose.c:45:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ ../Core/t_cholmod_transpose.c: In function 'p_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; ^~ ../Core/t_cholmod_transpose.c:142:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ ../Core/t_cholmod_transpose.c:142:23: warning: variable 'Fx' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ ../Core/t_cholmod_transpose.c:142:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ ../Core/t_cholmod_transpose.c:142:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ In file included from ../Core/cholmod_transpose.c:126: ../Core/t_cholmod_transpose.c: In function 'r_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^~~~~~~ ../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^~~~~~~ ../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^~~~ ../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^~~ ../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^~ ../Core/t_cholmod_transpose.c:45:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ ../Core/t_cholmod_transpose.c:45:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ ../Core/t_cholmod_transpose.c: In function 'r_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; ^~ ../Core/t_cholmod_transpose.c:142:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ ../Core/t_cholmod_transpose.c:142:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ In file included from ../Core/cholmod_transpose.c:128: ../Core/t_cholmod_transpose.c: In function 'c_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^~~~~~~ ../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^~~~~~~ ../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^~~~ ../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^~~ ../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^~ ../Core/t_cholmod_transpose.c:45:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ ../Core/t_cholmod_transpose.c:45:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ ../Core/t_cholmod_transpose.c: In function 'c_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; ^~ ../Core/t_cholmod_transpose.c:142:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ ../Core/t_cholmod_transpose.c:142:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ In file included from ../Core/cholmod_transpose.c:131: ../Core/t_cholmod_transpose.c: In function 'ct_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^~~~~~~ ../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^~~~~~~ ../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^~~~ ../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^~~ ../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^~ ../Core/t_cholmod_transpose.c:45:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ ../Core/t_cholmod_transpose.c:45:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ ../Core/t_cholmod_transpose.c: In function 'ct_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; ^~ ../Core/t_cholmod_transpose.c:142:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ ../Core/t_cholmod_transpose.c:142:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ In file included from ../Core/cholmod_transpose.c:133: ../Core/t_cholmod_transpose.c: In function 'z_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^~~~~~~ ../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^~~~~~~ ../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^~~~ ../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^~~ ../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^~ ../Core/t_cholmod_transpose.c: In function 'z_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; ^~ In file included from ../Core/cholmod_transpose.c:136: ../Core/t_cholmod_transpose.c: In function 'zt_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^~~~~~~ ../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^~~~~~~ ../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^~~~ ../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^~~ ../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^~ ../Core/t_cholmod_transpose.c: In function 'zt_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; ^~ gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../Core/cholmod_triplet.c -o cholmod_triplet.o In file included from ../Core/cholmod_triplet.c:108: ../Core/t_cholmod_triplet.c: In function 'p_cholmod_triplet_to_sparse': ../Core/t_cholmod_triplet.c:31:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable] double *Rx, *Rz, *Tx, *Tz ; ^~ ../Core/t_cholmod_triplet.c:31:23: warning: variable 'Tx' set but not used [-Wunused-but-set-variable] double *Rx, *Rz, *Tx, *Tz ; ^~ ../Core/t_cholmod_triplet.c:31:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable] double *Rx, *Rz, *Tx, *Tz ; ^~ ../Core/t_cholmod_triplet.c:31:13: warning: variable 'Rx' set but not used [-Wunused-but-set-variable] double *Rx, *Rz, *Tx, *Tz ; ^~ In file included from ../Core/cholmod_triplet.c:110: ../Core/t_cholmod_triplet.c: In function 'r_cholmod_triplet_to_sparse': ../Core/t_cholmod_triplet.c:31:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable] double *Rx, *Rz, *Tx, *Tz ; ^~ ../Core/t_cholmod_triplet.c:31:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable] double *Rx, *Rz, *Tx, *Tz ; ^~ In file included from ../Core/cholmod_triplet.c:112: ../Core/t_cholmod_triplet.c: In function 'c_cholmod_triplet_to_sparse': ../Core/t_cholmod_triplet.c:31:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable] double *Rx, *Rz, *Tx, *Tz ; ^~ ../Core/t_cholmod_triplet.c:31:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable] double *Rx, *Rz, *Tx, *Tz ; ^~ ../Core/cholmod_triplet.c: In function 'cholmod_triplet_to_sparse': ../Core/cholmod_triplet.c:345:44: warning: variable 'ok' set but not used [-Wunused-but-set-variable] Int i, j, p, k, stype, nrow, ncol, nz, ok ; ^~ ../Core/cholmod_triplet.c:344:20: warning: variable 'Ri' set but not used [-Wunused-but-set-variable] Int *Wj, *Rp, *Ri, *Rnz, *Ti, *Tj ; ^~ gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../Core/cholmod_version.c -o cholmod_version.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../Check/cholmod_check.c -o cholmod_check.o ../Check/cholmod_check.c: In function 'check_common': ../Check/cholmod_check.c:207:61: warning: variable 'init_print' set but not used [-Wunused-but-set-variable] Int i, nrow, nmethods, ordering, xworksize, amd_backup, init_print ; ^~~~~~~~~~ ../Check/cholmod_check.c: In function 'check_dense': ../Check/cholmod_check.c:961:37: warning: variable 'nz' set but not used [-Wunused-but-set-variable] Int i, j, d, nrow, ncol, nzmax, nz, init_print, count, xtype ; ^~ ../Check/cholmod_check.c: In function 'check_factor': ../Check/cholmod_check.c:1508:2: warning: variable 'ps2' set but not used [-Wunused-but-set-variable] ps2, psxend, ssize, xsize, maxcsize, maxesize, nsrow2, jj, ii, xtype ; ^~~ ../Check/cholmod_check.c:1506:9: warning: variable 'precise' set but not used [-Wunused-but-set-variable] count, precise, init_print, ilast, lnz, head, tail, jprev, plast, ^~~~~~~ ../Check/cholmod_check.c:1505:38: warning: variable 'ordering' set but not used [-Wunused-but-set-variable] Int n, nzmax, j, p, pend, i, nz, ordering, space, is_monotonic, minor, ^~~~~~~~ ../Check/cholmod_check.c: In function 'check_factor.constprop': ../Check/cholmod_check.c:1507:55: warning: 'psx' may be used uninitialized in this function [-Wmaybe-uninitialized] jnext, examine_super, nsuper, s, k1, k2, psi, psend, psx, nsrow, nscol, ^~~ gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../Check/cholmod_read.c -o cholmod_read.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../Check/cholmod_write.c -o cholmod_write.o ../Check/cholmod_write.c: In function 'cholmod_write_sparse': ../Check/cholmod_write.c:365:33: warning: variable 'symmetry' set but not used [-Wunused-but-set-variable] Int nrow, ncol, is_complex, symmetry, i, j, q, iz, p, nz, is_binary, stype, ^~~~~~~~ gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../Cholesky/cholmod_amd.c -o cholmod_amd.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../Cholesky/cholmod_analyze.c -o cholmod_analyze.o ../Cholesky/cholmod_analyze.c: In function 'cholmod_analyze_p2': ../Cholesky/cholmod_analyze.c:422:69: warning: variable 'ncol' set but not used [-Wunused-but-set-variable] Int k, n, ordering, method, nmethods, status, default_strategy, ncol, uncol, ^~~~ ../Cholesky/cholmod_analyze.c:419:45: warning: variable 'CParent' set but not used [-Wunused-but-set-variable] Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent, ^~~~~~~ ../Cholesky/cholmod_analyze.c:419:35: warning: variable 'Cmember' set but not used [-Wunused-but-set-variable] Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent, ^~~~~~~ gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../Cholesky/cholmod_colamd.c -o cholmod_colamd.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../Cholesky/cholmod_etree.c -o cholmod_etree.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../Cholesky/cholmod_factorize.c -o cholmod_factorize.o ../Cholesky/cholmod_factorize.c: In function 'cholmod_factorize_p': ../Cholesky/cholmod_factorize.c:114:37: warning: variable 'n' set but not used [-Wunused-but-set-variable] Int nrow, ncol, stype, convert, n, nsuper, grow2, status ; ^ gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../Cholesky/cholmod_postorder.c -o cholmod_postorder.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../Cholesky/cholmod_rcond.c -o cholmod_rcond.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../Cholesky/cholmod_resymbol.c -o cholmod_resymbol.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_rowcolcounts.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../Cholesky/cholmod_rowfac.c -o cholmod_rowfac.o In file included from ../Cholesky/cholmod_rowfac.c:164: ../Cholesky/t_cholmod_rowfac.c: In function 'r_cholmod_rowfac': ../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; ^~~~~ ../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^~ ../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^~ ../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^~ ../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^~ In file included from ../Cholesky/cholmod_rowfac.c:166: ../Cholesky/t_cholmod_rowfac.c: In function 'c_cholmod_rowfac': ../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; ^~~~~ ../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^~ ../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^~ ../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^~ ../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^~ In file included from ../Cholesky/cholmod_rowfac.c:168: ../Cholesky/t_cholmod_rowfac.c: In function 'z_cholmod_rowfac': ../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; ^~~~~ In file included from ../Cholesky/cholmod_rowfac.c:172: ../Cholesky/t_cholmod_rowfac.c: In function 'r_cholmod_rowfac_mask': ../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; ^~~~~ ../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^~ ../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^~ ../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^~ ../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^~ In file included from ../Cholesky/cholmod_rowfac.c:174: ../Cholesky/t_cholmod_rowfac.c: In function 'c_cholmod_rowfac_mask': ../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; ^~~~~ ../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^~ ../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^~ ../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^~ ../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^~ In file included from ../Cholesky/cholmod_rowfac.c:176: ../Cholesky/t_cholmod_rowfac.c: In function 'z_cholmod_rowfac_mask': ../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; ^~~~~ gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../Cholesky/cholmod_solve.c -o cholmod_solve.o In file included from ../Cholesky/cholmod_solve.c:66: ../Cholesky/t_cholmod_solve.c: In function 'r_ldl_dsolve': ../Cholesky/t_cholmod_solve.c:64:23: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] double *Lx, *Yx, *Yz ; ^~ In file included from ../Cholesky/cholmod_solve.c:69: ../Cholesky/t_cholmod_solve.c: In function 'c_ldl_dsolve': ../Cholesky/t_cholmod_solve.c:64:23: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] double *Lx, *Yx, *Yz ; ^~ ../Cholesky/cholmod_solve.c: In function 'iperm': ../Cholesky/cholmod_solve.c:337:13: warning: variable 'nk' set but not used [-Wunused-but-set-variable] Int k2, nk, p, k, j, nrow, ncol, d, dj, j2 ; ^~ gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../Cholesky/cholmod_spsolve.c -o cholmod_spsolve.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../MatrixOps/cholmod_drop.c -o cholmod_drop.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../MatrixOps/cholmod_horzcat.c -o cholmod_horzcat.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../MatrixOps/cholmod_norm.c -o cholmod_norm.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../MatrixOps/cholmod_scale.c -o cholmod_scale.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../MatrixOps/cholmod_sdmult.c -o cholmod_sdmult.o In file included from ../MatrixOps/cholmod_sdmult.c:46: ../MatrixOps/t_cholmod_sdmult.c: In function 'r_cholmod_sdmult': ../MatrixOps/t_cholmod_sdmult.c:55:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] Int packed, nrow, ncol, j, k, p, pend, kcol, i ; ^~~~ ../MatrixOps/t_cholmod_sdmult.c:52:47: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; ^~ ../MatrixOps/t_cholmod_sdmult.c:52:38: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; ^~ ../MatrixOps/t_cholmod_sdmult.c:52:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; ^~ ../MatrixOps/t_cholmod_sdmult.c:52:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; ^~ In file included from ../MatrixOps/cholmod_sdmult.c:48: ../MatrixOps/t_cholmod_sdmult.c: In function 'c_cholmod_sdmult': ../MatrixOps/t_cholmod_sdmult.c:55:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] Int packed, nrow, ncol, j, k, p, pend, kcol, i ; ^~~~ ../MatrixOps/t_cholmod_sdmult.c:52:47: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; ^~ ../MatrixOps/t_cholmod_sdmult.c:52:38: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; ^~ ../MatrixOps/t_cholmod_sdmult.c:52:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; ^~ ../MatrixOps/t_cholmod_sdmult.c:52:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; ^~ In file included from ../MatrixOps/cholmod_sdmult.c:50: ../MatrixOps/t_cholmod_sdmult.c: In function 'z_cholmod_sdmult': ../MatrixOps/t_cholmod_sdmult.c:55:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] Int packed, nrow, ncol, j, k, p, pend, kcol, i ; ^~~~ gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../MatrixOps/cholmod_ssmult.c -o cholmod_ssmult.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../MatrixOps/cholmod_submatrix.c -o cholmod_submatrix.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../MatrixOps/cholmod_vertcat.c -o cholmod_vertcat.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../MatrixOps/cholmod_symmetry.c -o cholmod_symmetry.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../Modify/cholmod_rowadd.c -o cholmod_rowadd.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../Modify/cholmod_rowdel.c -o cholmod_rowdel.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../Modify/cholmod_updown.c -o cholmod_updown.o ../Modify/cholmod_updown.c: In function 'cholmod_updown_mask': ../Modify/cholmod_updown.c:410:33: warning: variable 'ps1' set but not used [-Wunused-but-set-variable] *Set_ps1 [32], *Set_ps2 [32], *ps1, *ps2 ; ^~~ gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../Supernodal/cholmod_super_numeric.c -o cholmod_super_numeric.o In file included from ../Supernodal/cholmod_super_numeric.c:78: ../Supernodal/t_cholmod_super_numeric.c: In function 'r_cholmod_super_numeric': ../Supernodal/t_cholmod_super_numeric.c:111:33: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Lx, *Ax, *Fx, *Az, *Fz, *C ; ^~ ../Supernodal/t_cholmod_super_numeric.c:111:28: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Lx, *Ax, *Fx, *Az, *Fz, *C ; ^~ In file included from ../Supernodal/cholmod_super_numeric.c:80: ../Supernodal/t_cholmod_super_numeric.c: In function 'c_cholmod_super_numeric': ../Supernodal/t_cholmod_super_numeric.c:111:33: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Lx, *Ax, *Fx, *Az, *Fz, *C ; ^~ ../Supernodal/t_cholmod_super_numeric.c:111:28: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Lx, *Ax, *Fx, *Az, *Fz, *C ; ^~ gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../Supernodal/cholmod_super_solve.c -o cholmod_super_solve.o In file included from ../Supernodal/cholmod_super_solve.c:28: ../Supernodal/t_cholmod_super_solve.c: In function 'r_cholmod_super_lsolve': ../Supernodal/t_cholmod_super_solve.c:33:10: warning: variable 'n' set but not used [-Wunused-but-set-variable] nsrow2, n, ps2, j, i, d, nrhs ; ^ ../Supernodal/t_cholmod_super_solve.c: In function 'r_cholmod_super_ltsolve': ../Supernodal/t_cholmod_super_solve.c:241:10: warning: variable 'n' set but not used [-Wunused-but-set-variable] nsrow2, n, ps2, j, i, d, nrhs ; ^ In file included from ../Supernodal/cholmod_super_solve.c:30: ../Supernodal/t_cholmod_super_solve.c: In function 'c_cholmod_super_lsolve': ../Supernodal/t_cholmod_super_solve.c:33:10: warning: variable 'n' set but not used [-Wunused-but-set-variable] nsrow2, n, ps2, j, i, d, nrhs ; ^ ../Supernodal/t_cholmod_super_solve.c: In function 'c_cholmod_super_ltsolve': ../Supernodal/t_cholmod_super_solve.c:241:10: warning: variable 'n' set but not used [-Wunused-but-set-variable] nsrow2, n, ps2, j, i, d, nrhs ; ^ gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_super_symbolic.o ../Supernodal/cholmod_super_symbolic.c: In function 'cholmod_super_symbolic2': ../Supernodal/cholmod_super_symbolic.c:455:7: warning: variable 'totsize' set but not used [-Wunused-but-set-variable] Int totsize ; ^~~~~~~ gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Core/cholmod_aat.c -o cholmod_l_aat.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Core/cholmod_add.c -o cholmod_l_add.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Core/cholmod_band.c -o cholmod_l_band.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Core/cholmod_change_factor.c -o cholmod_l_change_factor.o In file included from ../Core/cholmod_change_factor.c:116: ../Core/t_cholmod_change_factor.c: In function 'r_change_simplicial_numeric': ../Core/t_cholmod_change_factor.c:40:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] double *Lx, *Lz ; ^~ In file included from ../Core/cholmod_change_factor.c:118: ../Core/t_cholmod_change_factor.c: In function 'c_change_simplicial_numeric': ../Core/t_cholmod_change_factor.c:40:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] double *Lx, *Lz ; ^~ ../Core/cholmod_change_factor.c: In function 'simplicial_symbolic_to_super_symbolic': ../Core/cholmod_change_factor.c:265:17: warning: variable 'xsize' set but not used [-Wunused-but-set-variable] Int nsuper, xsize, ssize ; ^~~~~ ../Core/cholmod_change_factor.c: In function 'change_simplicial_numeric': ../Core/cholmod_change_factor.c:680:15: warning: variable 'Li' set but not used [-Wunused-but-set-variable] Int *Lp, *Li, *Lnz ; ^~ ../Core/cholmod_change_factor.c:680:10: warning: variable 'Lp' set but not used [-Wunused-but-set-variable] Int *Lp, *Li, *Lnz ; ^~ ../Core/cholmod_change_factor.c:679:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] double *Lx, *Lz ; ^~ ../Core/cholmod_change_factor.c:679:13: warning: variable 'Lx' set but not used [-Wunused-but-set-variable] double *Lx, *Lz ; ^~ ../Core/cholmod_change_factor.c: In function 'll_super_to_simplicial_numeric': ../Core/cholmod_change_factor.c:827:9: warning: variable 'n' set but not used [-Wunused-but-set-variable] Int n, lnz, s, nsuper, psi, psend, nsrow, nscol, k1, k2, erows ; ^ ../Core/cholmod_change_factor.c:826:21: warning: variable 'Lpx' set but not used [-Wunused-but-set-variable] Int *Ls, *Lpi, *Lpx, *Super, *Li ; ^~~ ../Core/cholmod_change_factor.c:826:10: warning: variable 'Ls' set but not used [-Wunused-but-set-variable] Int *Ls, *Lpi, *Lpx, *Super, *Li ; ^~ gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Core/cholmod_common.c -o cholmod_l_common.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Core/cholmod_complex.c -o cholmod_l_complex.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Core/cholmod_copy.c -o cholmod_l_copy.o ../Core/cholmod_copy.c: In function 'cholmod_l_copy': ../Core/cholmod_copy.c:278:25: warning: variable 'lo' set but not used [-Wunused-but-set-variable] Int nrow, ncol, up, lo, values, diag, astype ; ^~ ../Core/cholmod_copy.c:278:21: warning: variable 'up' set but not used [-Wunused-but-set-variable] Int nrow, ncol, up, lo, values, diag, astype ; ^~ gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Core/cholmod_dense.c -o cholmod_l_dense.o In file included from ../Core/cholmod_dense.c:48: ../Core/t_cholmod_dense.c: In function 'p_cholmod_sparse_to_dense': ../Core/t_cholmod_dense.c:30:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Ax, *Xx, *Az, *Xz ; ^~ ../Core/t_cholmod_dense.c:30:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Xx, *Az, *Xz ; ^~ ../Core/t_cholmod_dense.c:30:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable] double *Ax, *Xx, *Az, *Xz ; ^~ In file included from ../Core/cholmod_dense.c:50: ../Core/t_cholmod_dense.c: In function 'r_cholmod_sparse_to_dense': ../Core/t_cholmod_dense.c:30:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Ax, *Xx, *Az, *Xz ; ^~ ../Core/t_cholmod_dense.c:30:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Xx, *Az, *Xz ; ^~ ../Core/t_cholmod_dense.c: In function 'r_cholmod_dense_to_sparse': ../Core/t_cholmod_dense.c:136:28: warning: variable 'Cz' set but not used [-Wunused-but-set-variable] double *Xx, *Cx, *Xz, *Cz ; ^~ ../Core/t_cholmod_dense.c:136:23: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Xx, *Cx, *Xz, *Cz ; ^~ ../Core/t_cholmod_dense.c: In function 'r_cholmod_copy_dense2': ../Core/t_cholmod_dense.c:229:28: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] double *Xx, *Xz, *Yx, *Yz ; ^~ ../Core/t_cholmod_dense.c:229:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Xx, *Xz, *Yx, *Yz ; ^~ In file included from ../Core/cholmod_dense.c:52: ../Core/t_cholmod_dense.c: In function 'c_cholmod_sparse_to_dense': ../Core/t_cholmod_dense.c:30:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Ax, *Xx, *Az, *Xz ; ^~ ../Core/t_cholmod_dense.c:30:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Xx, *Az, *Xz ; ^~ ../Core/t_cholmod_dense.c: In function 'c_cholmod_dense_to_sparse': ../Core/t_cholmod_dense.c:136:28: warning: variable 'Cz' set but not used [-Wunused-but-set-variable] double *Xx, *Cx, *Xz, *Cz ; ^~ ../Core/t_cholmod_dense.c:136:23: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Xx, *Cx, *Xz, *Cz ; ^~ ../Core/t_cholmod_dense.c: In function 'c_cholmod_copy_dense2': ../Core/t_cholmod_dense.c:229:28: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] double *Xx, *Xz, *Yx, *Yz ; ^~ ../Core/t_cholmod_dense.c:229:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Xx, *Xz, *Yx, *Yz ; ^~ ../Core/cholmod_dense.c: In function 'cholmod_l_eye': ../Core/cholmod_dense.c:303:15: warning: variable 'nz' set but not used [-Wunused-but-set-variable] Int i, n, nz ; ^~ ../Core/cholmod_dense.c:302:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Xx, *Xz ; ^~ gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Core/cholmod_error.c -o cholmod_l_error.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Core/cholmod_factor.c -o cholmod_l_factor.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Core/cholmod_memory.c -o cholmod_l_memory.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Core/cholmod_sparse.c -o cholmod_l_sparse.o ../Core/cholmod_sparse.c: In function 'cholmod_l_copy_sparse': ../Core/cholmod_sparse.c:488:35: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] Int p, pend, j, ncol, packed, nzmax, nz, xtype ; ^~~~~ gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Core/cholmod_transpose.c -o cholmod_l_transpose.o In file included from ../Core/cholmod_transpose.c:124: ../Core/t_cholmod_transpose.c: In function 'p_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^~~~~~~ ../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^~~~~~~ ../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^~~~ ../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^~~ ../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^~ ../Core/t_cholmod_transpose.c:45:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ ../Core/t_cholmod_transpose.c:45:23: warning: variable 'Fx' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ ../Core/t_cholmod_transpose.c:45:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ ../Core/t_cholmod_transpose.c:45:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ ../Core/t_cholmod_transpose.c: In function 'p_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; ^~ ../Core/t_cholmod_transpose.c:142:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ ../Core/t_cholmod_transpose.c:142:23: warning: variable 'Fx' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ ../Core/t_cholmod_transpose.c:142:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ ../Core/t_cholmod_transpose.c:142:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ In file included from ../Core/cholmod_transpose.c:126: ../Core/t_cholmod_transpose.c: In function 'r_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^~~~~~~ ../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^~~~~~~ ../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^~~~ ../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^~~ ../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^~ ../Core/t_cholmod_transpose.c:45:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ ../Core/t_cholmod_transpose.c:45:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ ../Core/t_cholmod_transpose.c: In function 'r_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; ^~ ../Core/t_cholmod_transpose.c:142:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ ../Core/t_cholmod_transpose.c:142:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ In file included from ../Core/cholmod_transpose.c:128: ../Core/t_cholmod_transpose.c: In function 'c_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^~~~~~~ ../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^~~~~~~ ../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^~~~ ../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^~~ ../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^~ ../Core/t_cholmod_transpose.c:45:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ ../Core/t_cholmod_transpose.c:45:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ ../Core/t_cholmod_transpose.c: In function 'c_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; ^~ ../Core/t_cholmod_transpose.c:142:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ ../Core/t_cholmod_transpose.c:142:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ In file included from ../Core/cholmod_transpose.c:131: ../Core/t_cholmod_transpose.c: In function 'ct_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^~~~~~~ ../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^~~~~~~ ../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^~~~ ../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^~~ ../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^~ ../Core/t_cholmod_transpose.c:45:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ ../Core/t_cholmod_transpose.c:45:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ ../Core/t_cholmod_transpose.c: In function 'ct_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; ^~ ../Core/t_cholmod_transpose.c:142:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ ../Core/t_cholmod_transpose.c:142:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Fx, *Fz ; ^~ In file included from ../Core/cholmod_transpose.c:133: ../Core/t_cholmod_transpose.c: In function 'z_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^~~~~~~ ../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^~~~~~~ ../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^~~~ ../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^~~ ../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^~ ../Core/t_cholmod_transpose.c: In function 'z_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; ^~ In file included from ../Core/cholmod_transpose.c:136: ../Core/t_cholmod_transpose.c: In function 'zt_cholmod_transpose_unsym': ../Core/t_cholmod_transpose.c:47:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^~~~~~~ ../Core/t_cholmod_transpose.c:47:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^~~~~~~ ../Core/t_cholmod_transpose.c:47:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; ^~~~ ../Core/t_cholmod_transpose.c:46:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^~~ ../Core/t_cholmod_transpose.c:46:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; ^~ ../Core/t_cholmod_transpose.c: In function 'zt_cholmod_transpose_sym': ../Core/t_cholmod_transpose.c:143:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable] Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; ^~ gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Core/cholmod_triplet.c -o cholmod_l_triplet.o In file included from ../Core/cholmod_triplet.c:108: ../Core/t_cholmod_triplet.c: In function 'p_cholmod_triplet_to_sparse': ../Core/t_cholmod_triplet.c:31:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable] double *Rx, *Rz, *Tx, *Tz ; ^~ ../Core/t_cholmod_triplet.c:31:23: warning: variable 'Tx' set but not used [-Wunused-but-set-variable] double *Rx, *Rz, *Tx, *Tz ; ^~ ../Core/t_cholmod_triplet.c:31:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable] double *Rx, *Rz, *Tx, *Tz ; ^~ ../Core/t_cholmod_triplet.c:31:13: warning: variable 'Rx' set but not used [-Wunused-but-set-variable] double *Rx, *Rz, *Tx, *Tz ; ^~ In file included from ../Core/cholmod_triplet.c:110: ../Core/t_cholmod_triplet.c: In function 'r_cholmod_triplet_to_sparse': ../Core/t_cholmod_triplet.c:31:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable] double *Rx, *Rz, *Tx, *Tz ; ^~ ../Core/t_cholmod_triplet.c:31:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable] double *Rx, *Rz, *Tx, *Tz ; ^~ In file included from ../Core/cholmod_triplet.c:112: ../Core/t_cholmod_triplet.c: In function 'c_cholmod_triplet_to_sparse': ../Core/t_cholmod_triplet.c:31:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable] double *Rx, *Rz, *Tx, *Tz ; ^~ ../Core/t_cholmod_triplet.c:31:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable] double *Rx, *Rz, *Tx, *Tz ; ^~ ../Core/cholmod_triplet.c: In function 'cholmod_l_triplet_to_sparse': ../Core/cholmod_triplet.c:345:44: warning: variable 'ok' set but not used [-Wunused-but-set-variable] Int i, j, p, k, stype, nrow, ncol, nz, ok ; ^~ ../Core/cholmod_triplet.c:344:20: warning: variable 'Ri' set but not used [-Wunused-but-set-variable] Int *Wj, *Rp, *Ri, *Rnz, *Ti, *Tj ; ^~ gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Core/cholmod_version.c -o cholmod_l_version.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Check/cholmod_check.c -o cholmod_l_check.o ../Check/cholmod_check.c: In function 'check_common': ../Check/cholmod_check.c:207:61: warning: variable 'init_print' set but not used [-Wunused-but-set-variable] Int i, nrow, nmethods, ordering, xworksize, amd_backup, init_print ; ^~~~~~~~~~ ../Check/cholmod_check.c: In function 'check_dense': ../Check/cholmod_check.c:961:37: warning: variable 'nz' set but not used [-Wunused-but-set-variable] Int i, j, d, nrow, ncol, nzmax, nz, init_print, count, xtype ; ^~ ../Check/cholmod_check.c: In function 'check_factor': ../Check/cholmod_check.c:1508:2: warning: variable 'ps2' set but not used [-Wunused-but-set-variable] ps2, psxend, ssize, xsize, maxcsize, maxesize, nsrow2, jj, ii, xtype ; ^~~ ../Check/cholmod_check.c:1506:9: warning: variable 'precise' set but not used [-Wunused-but-set-variable] count, precise, init_print, ilast, lnz, head, tail, jprev, plast, ^~~~~~~ ../Check/cholmod_check.c:1505:38: warning: variable 'ordering' set but not used [-Wunused-but-set-variable] Int n, nzmax, j, p, pend, i, nz, ordering, space, is_monotonic, minor, ^~~~~~~~ ../Check/cholmod_check.c: In function 'check_factor.constprop': ../Check/cholmod_check.c:1507:55: warning: 'psx' may be used uninitialized in this function [-Wmaybe-uninitialized] jnext, examine_super, nsuper, s, k1, k2, psi, psend, psx, nsrow, nscol, ^~~ gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Check/cholmod_read.c -o cholmod_l_read.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Check/cholmod_write.c -o cholmod_l_write.o ../Check/cholmod_write.c: In function 'cholmod_l_write_sparse': ../Check/cholmod_write.c:365:33: warning: variable 'symmetry' set but not used [-Wunused-but-set-variable] Int nrow, ncol, is_complex, symmetry, i, j, q, iz, p, nz, is_binary, stype, ^~~~~~~~ gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Cholesky/cholmod_amd.c -o cholmod_l_amd.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Cholesky/cholmod_analyze.c -o cholmod_l_analyze.o ../Cholesky/cholmod_analyze.c: In function 'cholmod_l_analyze_p2': ../Cholesky/cholmod_analyze.c:422:69: warning: variable 'ncol' set but not used [-Wunused-but-set-variable] Int k, n, ordering, method, nmethods, status, default_strategy, ncol, uncol, ^~~~ ../Cholesky/cholmod_analyze.c:419:45: warning: variable 'CParent' set but not used [-Wunused-but-set-variable] Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent, ^~~~~~~ ../Cholesky/cholmod_analyze.c:419:35: warning: variable 'Cmember' set but not used [-Wunused-but-set-variable] Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent, ^~~~~~~ gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Cholesky/cholmod_colamd.c -o cholmod_l_colamd.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Cholesky/cholmod_etree.c -o cholmod_l_etree.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Cholesky/cholmod_factorize.c -o cholmod_l_factorize.o ../Cholesky/cholmod_factorize.c: In function 'cholmod_l_factorize_p': ../Cholesky/cholmod_factorize.c:114:37: warning: variable 'n' set but not used [-Wunused-but-set-variable] Int nrow, ncol, stype, convert, n, nsuper, grow2, status ; ^ gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Cholesky/cholmod_postorder.c -o cholmod_l_postorder.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Cholesky/cholmod_rcond.c -o cholmod_l_rcond.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Cholesky/cholmod_resymbol.c -o cholmod_l_resymbol.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_l_rowcolcounts.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Cholesky/cholmod_rowfac.c -o cholmod_l_rowfac.o In file included from ../Cholesky/cholmod_rowfac.c:164: ../Cholesky/t_cholmod_rowfac.c: In function 'r_cholmod_rowfac': ../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; ^~~~~ ../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^~ ../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^~ ../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^~ ../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^~ In file included from ../Cholesky/cholmod_rowfac.c:166: ../Cholesky/t_cholmod_rowfac.c: In function 'c_cholmod_rowfac': ../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; ^~~~~ ../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^~ ../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^~ ../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^~ ../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^~ In file included from ../Cholesky/cholmod_rowfac.c:168: ../Cholesky/t_cholmod_rowfac.c: In function 'z_cholmod_rowfac': ../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; ^~~~~ In file included from ../Cholesky/cholmod_rowfac.c:172: ../Cholesky/t_cholmod_rowfac.c: In function 'r_cholmod_rowfac_mask': ../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; ^~~~~ ../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^~ ../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^~ ../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^~ ../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^~ In file included from ../Cholesky/cholmod_rowfac.c:174: ../Cholesky/t_cholmod_rowfac.c: In function 'c_cholmod_rowfac_mask': ../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; ^~~~~ ../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^~ ../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^~ ../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^~ ../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; ^~ In file included from ../Cholesky/cholmod_rowfac.c:176: ../Cholesky/t_cholmod_rowfac.c: In function 'z_cholmod_rowfac_mask': ../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable] use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; ^~~~~ gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Cholesky/cholmod_solve.c -o cholmod_l_solve.o In file included from ../Cholesky/cholmod_solve.c:66: ../Cholesky/t_cholmod_solve.c: In function 'r_ldl_dsolve': ../Cholesky/t_cholmod_solve.c:64:23: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] double *Lx, *Yx, *Yz ; ^~ In file included from ../Cholesky/cholmod_solve.c:69: ../Cholesky/t_cholmod_solve.c: In function 'c_ldl_dsolve': ../Cholesky/t_cholmod_solve.c:64:23: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] double *Lx, *Yx, *Yz ; ^~ ../Cholesky/cholmod_solve.c: In function 'iperm': ../Cholesky/cholmod_solve.c:337:13: warning: variable 'nk' set but not used [-Wunused-but-set-variable] Int k2, nk, p, k, j, nrow, ncol, d, dj, j2 ; ^~ gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Cholesky/cholmod_spsolve.c -o cholmod_l_spsolve.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../MatrixOps/cholmod_drop.c -o cholmod_l_drop.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../MatrixOps/cholmod_horzcat.c -o cholmod_l_horzcat.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../MatrixOps/cholmod_norm.c -o cholmod_l_norm.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../MatrixOps/cholmod_scale.c -o cholmod_l_scale.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../MatrixOps/cholmod_sdmult.c -o cholmod_l_sdmult.o In file included from ../MatrixOps/cholmod_sdmult.c:46: ../MatrixOps/t_cholmod_sdmult.c: In function 'r_cholmod_sdmult': ../MatrixOps/t_cholmod_sdmult.c:55:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] Int packed, nrow, ncol, j, k, p, pend, kcol, i ; ^~~~ ../MatrixOps/t_cholmod_sdmult.c:52:47: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; ^~ ../MatrixOps/t_cholmod_sdmult.c:52:38: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; ^~ ../MatrixOps/t_cholmod_sdmult.c:52:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; ^~ ../MatrixOps/t_cholmod_sdmult.c:52:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; ^~ In file included from ../MatrixOps/cholmod_sdmult.c:48: ../MatrixOps/t_cholmod_sdmult.c: In function 'c_cholmod_sdmult': ../MatrixOps/t_cholmod_sdmult.c:55:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] Int packed, nrow, ncol, j, k, p, pend, kcol, i ; ^~~~ ../MatrixOps/t_cholmod_sdmult.c:52:47: warning: variable 'Wz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; ^~ ../MatrixOps/t_cholmod_sdmult.c:52:38: warning: variable 'Yz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; ^~ ../MatrixOps/t_cholmod_sdmult.c:52:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; ^~ ../MatrixOps/t_cholmod_sdmult.c:52:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; ^~ In file included from ../MatrixOps/cholmod_sdmult.c:50: ../MatrixOps/t_cholmod_sdmult.c: In function 'z_cholmod_sdmult': ../MatrixOps/t_cholmod_sdmult.c:55:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] Int packed, nrow, ncol, j, k, p, pend, kcol, i ; ^~~~ gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../MatrixOps/cholmod_ssmult.c -o cholmod_l_ssmult.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../MatrixOps/cholmod_submatrix.c -o cholmod_l_submatrix.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../MatrixOps/cholmod_vertcat.c -o cholmod_l_vertcat.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../MatrixOps/cholmod_symmetry.c -o cholmod_l_symmetry.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Modify/cholmod_rowadd.c -o cholmod_l_rowadd.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Modify/cholmod_rowdel.c -o cholmod_l_rowdel.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Modify/cholmod_updown.c -o cholmod_l_updown.o ../Modify/cholmod_updown.c: In function 'cholmod_l_updown_mask': ../Modify/cholmod_updown.c:410:33: warning: variable 'ps1' set but not used [-Wunused-but-set-variable] *Set_ps1 [32], *Set_ps2 [32], *ps1, *ps2 ; ^~~ gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Supernodal/cholmod_super_numeric.c -o cholmod_l_super_numeric.o In file included from ../Supernodal/cholmod_super_numeric.c:78: ../Supernodal/t_cholmod_super_numeric.c: In function 'r_cholmod_super_numeric': ../Supernodal/t_cholmod_super_numeric.c:111:33: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Lx, *Ax, *Fx, *Az, *Fz, *C ; ^~ ../Supernodal/t_cholmod_super_numeric.c:111:28: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Lx, *Ax, *Fx, *Az, *Fz, *C ; ^~ In file included from ../Supernodal/cholmod_super_numeric.c:80: ../Supernodal/t_cholmod_super_numeric.c: In function 'c_cholmod_super_numeric': ../Supernodal/t_cholmod_super_numeric.c:111:33: warning: variable 'Fz' set but not used [-Wunused-but-set-variable] double *Lx, *Ax, *Fx, *Az, *Fz, *C ; ^~ ../Supernodal/t_cholmod_super_numeric.c:111:28: warning: variable 'Az' set but not used [-Wunused-but-set-variable] double *Lx, *Ax, *Fx, *Az, *Fz, *C ; ^~ gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Supernodal/cholmod_super_solve.c -o cholmod_l_super_solve.o In file included from ../Supernodal/cholmod_super_solve.c:28: ../Supernodal/t_cholmod_super_solve.c: In function 'r_cholmod_super_lsolve': ../Supernodal/t_cholmod_super_solve.c:33:10: warning: variable 'n' set but not used [-Wunused-but-set-variable] nsrow2, n, ps2, j, i, d, nrhs ; ^ ../Supernodal/t_cholmod_super_solve.c: In function 'r_cholmod_super_ltsolve': ../Supernodal/t_cholmod_super_solve.c:241:10: warning: variable 'n' set but not used [-Wunused-but-set-variable] nsrow2, n, ps2, j, i, d, nrhs ; ^ In file included from ../Supernodal/cholmod_super_solve.c:30: ../Supernodal/t_cholmod_super_solve.c: In function 'c_cholmod_super_lsolve': ../Supernodal/t_cholmod_super_solve.c:33:10: warning: variable 'n' set but not used [-Wunused-but-set-variable] nsrow2, n, ps2, j, i, d, nrhs ; ^ ../Supernodal/t_cholmod_super_solve.c: In function 'c_cholmod_super_ltsolve': ../Supernodal/t_cholmod_super_solve.c:241:10: warning: variable 'n' set but not used [-Wunused-but-set-variable] nsrow2, n, ps2, j, i, d, nrhs ; ^ gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DDLONG -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_l_super_symbolic.o ../Supernodal/cholmod_super_symbolic.c: In function 'cholmod_l_super_symbolic2': ../Supernodal/cholmod_super_symbolic.c:455:7: warning: variable 'totsize' set but not used [-Wunused-but-set-variable] Int totsize ; ^~~~~~~ ar -rucs ../../CHOLMOD.a cholmod_aat.o cholmod_add.o cholmod_band.o cholmod_change_factor.o cholmod_common.o cholmod_complex.o cholmod_copy.o cholmod_dense.o cholmod_error.o cholmod_factor.o cholmod_memory.o cholmod_sparse.o cholmod_transpose.o cholmod_triplet.o cholmod_version.o cholmod_check.o cholmod_read.o cholmod_write.o cholmod_amd.o cholmod_analyze.o cholmod_colamd.o cholmod_etree.o cholmod_factorize.o cholmod_postorder.o cholmod_rcond.o cholmod_resymbol.o cholmod_rowcolcounts.o cholmod_rowfac.o cholmod_solve.o cholmod_spsolve.o cholmod_drop.o cholmod_horzcat.o cholmod_norm.o cholmod_scale.o cholmod_sdmult.o cholmod_ssmult.o cholmod_submatrix.o cholmod_vertcat.o cholmod_symmetry.o cholmod_rowadd.o cholmod_rowdel.o cholmod_updown.o cholmod_super_numeric.o cholmod_super_solve.o cholmod_super_symbolic.o cholmod_l_aat.o cholmod_l_add.o cholmod_l_band.o cholmod_l_change_factor.o cholmod_l_common.o cholmod_l_complex.o cholmod_l_copy.o cholmod_l_dense.o cholmod_l_error.o cholmod_l_factor.o cholmod_l_memory.o cholmod_l_sparse.o cholmod_l_transpose.o cholmod_l_triplet.o cholmod_l_version.o cholmod_l_check.o cholmod_l_read.o cholmod_l_write.o cholmod_l_amd.o cholmod_l_analyze.o cholmod_l_colamd.o cholmod_l_etree.o cholmod_l_factorize.o cholmod_l_postorder.o cholmod_l_rcond.o cholmod_l_resymbol.o cholmod_l_rowcolcounts.o cholmod_l_rowfac.o cholmod_l_solve.o cholmod_l_spsolve.o cholmod_l_drop.o cholmod_l_horzcat.o cholmod_l_norm.o cholmod_l_scale.o cholmod_l_sdmult.o cholmod_l_ssmult.o cholmod_l_submatrix.o cholmod_l_vertcat.o cholmod_l_symmetry.o cholmod_l_rowadd.o cholmod_l_rowdel.o cholmod_l_updown.o cholmod_l_super_numeric.o cholmod_l_super_solve.o cholmod_l_super_symbolic.o make[5]: Leaving directory '/tmp/RtmpMzZb3b/R.INSTALL48b6938c2f7/Matrix/src/CHOLMOD/Lib' make[4]: Leaving directory '/tmp/RtmpMzZb3b/R.INSTALL48b6938c2f7/Matrix/src/CHOLMOD' make[4]: Entering directory '/tmp/RtmpMzZb3b/R.INSTALL48b6938c2f7/Matrix/src/COLAMD' ( cd Source ; make -f "/builddir/build/BUILD/R-3.5.0/etc/Makeconf" -f Makefile lib ) make[5]: Entering directory '/tmp/RtmpMzZb3b/R.INSTALL48b6938c2f7/Matrix/src/COLAMD/Source' gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c colamd_global.c -o colamd_global.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c colamd.c -o colamd.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDLONG -c colamd.c -o colamd_l.o ar -rucs ../../COLAMD.a colamd_global.o colamd.o colamd_l.o make[5]: Leaving directory '/tmp/RtmpMzZb3b/R.INSTALL48b6938c2f7/Matrix/src/COLAMD/Source' make[4]: Leaving directory '/tmp/RtmpMzZb3b/R.INSTALL48b6938c2f7/Matrix/src/COLAMD' make[4]: Entering directory '/tmp/RtmpMzZb3b/R.INSTALL48b6938c2f7/Matrix/src/AMD' ( cd Source ; make -f "/builddir/build/BUILD/R-3.5.0/etc/Makeconf" -f Makefile lib ) make[5]: Entering directory '/tmp/RtmpMzZb3b/R.INSTALL48b6938c2f7/Matrix/src/AMD/Source' gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDINT -c amd_aat.c -o amd_i_aat.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDLONG -c amd_aat.c -o amd_l_aat.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDINT -c amd_1.c -o amd_i_1.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDLONG -c amd_1.c -o amd_l_1.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDINT -c amd_2.c -o amd_i_2.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDLONG -c amd_2.c -o amd_l_2.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDINT -c amd_postorder.c -o amd_i_postorder.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDLONG -c amd_postorder.c -o amd_l_postorder.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDINT -c amd_post_tree.c -o amd_i_post_tree.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDLONG -c amd_post_tree.c -o amd_l_post_tree.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDINT -c amd_defaults.c -o amd_i_defaults.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDLONG -c amd_defaults.c -o amd_l_defaults.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDINT -c amd_order.c -o amd_i_order.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDLONG -c amd_order.c -o amd_l_order.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDINT -c amd_control.c -o amd_i_control.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDLONG -c amd_control.c -o amd_l_control.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDINT -c amd_info.c -o amd_i_info.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDLONG -c amd_info.c -o amd_l_info.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDINT -c amd_valid.c -o amd_i_valid.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDLONG -c amd_valid.c -o amd_l_valid.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDINT -c amd_preprocess.c -o amd_i_preprocess.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDLONG -c amd_preprocess.c -o amd_l_preprocess.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDINT -c amd_dump.c -o amd_i_dump.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDLONG -c amd_dump.c -o amd_l_dump.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDINT -c amd_global.c -o amd_i_global.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I../Include -DDLONG -c amd_global.c -o amd_l_global.o ar -rucs ../../AMD.a amd_i_aat.o amd_l_aat.o amd_i_1.o amd_l_1.o amd_i_2.o amd_l_2.o amd_i_postorder.o amd_l_postorder.o amd_i_post_tree.o amd_l_post_tree.o amd_i_defaults.o amd_l_defaults.o amd_i_order.o amd_l_order.o amd_i_control.o amd_l_control.o amd_i_info.o amd_l_info.o amd_i_valid.o amd_l_valid.o amd_i_preprocess.o amd_l_preprocess.o amd_i_dump.o amd_l_dump.o amd_i_global.o amd_l_global.o make[5]: Leaving directory '/tmp/RtmpMzZb3b/R.INSTALL48b6938c2f7/Matrix/src/AMD/Source' make[4]: Leaving directory '/tmp/RtmpMzZb3b/R.INSTALL48b6938c2f7/Matrix/src/AMD' make[4]: Entering directory '/tmp/RtmpMzZb3b/R.INSTALL48b6938c2f7/Matrix/src/SuiteSparse_config' gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -DNTIMER -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c SuiteSparse_config.c -o SuiteSparse_config.o ar -rucs ../SuiteSparse_config.a SuiteSparse_config.o make[4]: Leaving directory '/tmp/RtmpMzZb3b/R.INSTALL48b6938c2f7/Matrix/src/SuiteSparse_config' gcc -shared -L/builddir/build/BUILD/R-3.5.0/lib -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o Matrix.so CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o chm_common.o cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o dgeMatrix.o dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o dtTMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o ldense.o lgCMatrix.o sparseQR.o abIndex.o CHOLMOD.a COLAMD.a AMD.a SuiteSparse_config.a -L/builddir/build/BUILD/R-3.5.0/lib -lRlapack -L/builddir/build/BUILD/R-3.5.0/lib -lRblas -L -L -lgfortran -lm -L/builddir/build/BUILD/R-3.5.0/lib -lR make[3]: Leaving directory '/tmp/RtmpMzZb3b/R.INSTALL48b6938c2f7/Matrix/src' installing to /builddir/build/BUILD/R-3.5.0/library/Matrix/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'chol2inv' from 'base' in package 'Matrix' (from the saved implicit definition) Creating a generic function for 'chol2inv' from package 'base' in package 'Matrix' Creating a generic function for 'diag' from package 'base' in package 'Matrix' Creating a generic function for 'drop' from package 'base' in package 'Matrix' Creating a generic function for 'cov2cor' from package 'stats' in package 'Matrix' Creating a generic function for 'unname' from package 'base' in package 'Matrix' Creating a generic function for 'norm' from package 'base' in package 'Matrix' Creating a generic function for 'rcond' from 'base' in package 'Matrix' (from the saved implicit definition) Creating a generic function for 'rcond' from package 'base' in package 'Matrix' in method for 'coerce' with signature '"matrix.csr","dgRMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"dgRMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csc","dgCMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"dgCMatrix","matrix.csc"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.coo","dgTMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"dgTMatrix","matrix.coo"': no definition for class "matrix.coo" in method for 'coerce' with signature '"dsparseMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csr","dgCMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","dgCMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csr","RsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csc","CsparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.coo","TsparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csr","CsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","CsparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csc","TsparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","TsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"CsparseMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"CsparseMatrix","matrix.coo"': no definition for class "matrix.coo" in method for 'coerce' with signature '"CsparseMatrix","matrix.csc"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","Matrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","Matrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csc","Matrix"': no definition for class "matrix.csc" Creating a generic function for 'colSums' from package 'base' in package 'Matrix' Creating a generic function for 'colMeans' from package 'base' in package 'Matrix' Creating a generic function for 'rowSums' from package 'base' in package 'Matrix' Creating a generic function for 'rowMeans' from package 'base' in package 'Matrix' in method for 'colSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'rowSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'colMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'rowMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix" Creating a generic function for 'zapsmall' from package 'base' in package 'Matrix' Creating a generic function for 'diag<-' from package 'base' in package 'Matrix' Creating a generic function for 'crossprod' from package 'base' in package 'Matrix' Creating a generic function for 'tcrossprod' from package 'base' in package 'Matrix' Creating a generic function for 'which' from package 'base' in package 'Matrix' in method for 'coerce' with signature '"graphAM","sparseMatrix"': no definition for class "graphAM" in method for 'coerce' with signature '"graph","CsparseMatrix"': no definition for class "graph" in method for 'coerce' with signature '"graph","Matrix"': no definition for class "graph" in method for 'coerce' with signature '"graphNEL","CsparseMatrix"': no definition for class "graphNEL" in method for 'coerce' with signature '"graphNEL","TsparseMatrix"': no definition for class "graphNEL" in method for 'coerce' with signature '"sparseMatrix","graph"': no definition for class "graph" in method for 'coerce' with signature '"sparseMatrix","graphNEL"': no definition for class "graphNEL" in method for 'coerce' with signature '"TsparseMatrix","graphNEL"': no definition for class "graphNEL" Creating a generic function for 'qr.R' from package 'base' in package 'Matrix' Creating a generic function for 'qr.Q' from package 'base' in package 'Matrix' Creating a generic function for 'qr.qy' from package 'base' in package 'Matrix' Creating a generic function for 'qr.qty' from package 'base' in package 'Matrix' Creating a generic function for 'qr.coef' from package 'base' in package 'Matrix' Creating a generic function for 'qr.resid' from package 'base' in package 'Matrix' Creating a generic function for 'qr.fitted' from package 'base' in package 'Matrix' Creating a generic function for 'toeplitz' from package 'stats' in package 'Matrix' ** help *** installing help indices converting help for package 'Matrix' finding HTML links ... done BunchKaufman-methods html CAex html CHMfactor-class html Cholesky-class html Cholesky html CsparseMatrix-class html Diagonal html Hilbert html KNex html KhatriRao html LU-class html Matrix-class html Matrix html MatrixClass html MatrixFactorization-class html RsparseMatrix-class html Schur-class html Schur html SparseM-conv html Subassign-methods html TsparseMatrix-class html USCounties html Xtrct-methods html abIndex-class html Rd warning: /tmp/RtmpMzZb3b/R.INSTALL48b6938c2f7/Matrix/man/abIndex-class.Rd:80: file link 'Ops' in package 'methods' does not exist and so has been treated as a topic abIseq html all-methods html all.equal-methods html atomicVector-class html band html bandSparse html bdiag html boolean-matprod html cBind html chol html chol2inv-methods html colSums html compMatrix-class html condest html dMatrix-class html ddenseMatrix-class html ddiMatrix-class html denseMatrix-class html dgCMatrix-class html dgRMatrix-class html dgTMatrix-class html dgeMatrix-class html diagU2N html diagonalMatrix-class html dpoMatrix-class html drop0 html dsCMatrix-class html dsRMatrix-class html dsparseMatrix-class html dsyMatrix-class html dtCMatrix-class html dtRMatrix-class-def html dtpMatrix-class html dtrMatrix-class html expand html expm html externalFormats html facmul html forceSymmetric html formatSparseM html generalMatrix-class html graph2T html image-methods html Rd warning: /tmp/RtmpMzZb3b/R.INSTALL48b6938c2f7/Matrix/man/image-methods.Rd:53: file link 'panel.levelplot.raster' in package 'lattice' does not exist and so has been treated as a topic indMatrix-class html index-class html invPerm html is.na-methods html is.null.DN html isSymmetric-methods html isTriangular html kronecker-methods html ldenseMatrix-class html ldiMatrix-class html lgeMatrix-class html lsparseMatrix-classes html lsyMatrix-class html ltrMatrix-class html lu html matrix-products html Rd warning: /tmp/RtmpMzZb3b/R.INSTALL48b6938c2f7/Matrix/man/matrix-products.Rd:406: file link 'tcrossprod' in package 'base' does not exist and so has been treated as a topic nMatrix-class html ndenseMatrix-class html nearPD html ngeMatrix-class html nnzero html norm html nsparseMatrix-classes html nsyMatrix-class html ntrMatrix-class html number-class html pMatrix-class html printSpMatrix html qr-methods html rankMatrix html rcond html rep2abI html replValue-class html rleDiff-class html rsparsematrix html solve-methods html spMatrix html sparse.model.matrix html sparseLU-class html sparseMatrix-class html sparseMatrix html sparseQR-class html sparseVector-class html sparseVector html symmetricMatrix-class html symmpart html triangularMatrix-class html uniqTsparse html unpack html unused-classes html updown html ** building package indices Loading required package: Matrix ** installing vignettes ** testing if installed package can be loaded * DONE (Matrix) Making 'packages.html' ... done begin installing recommended package nlme * installing *source* package 'nlme' ... ** package 'nlme' successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory '/tmp/RtmpsbRd3o/R.INSTALL6935d2adaf0/nlme/src' gfortran -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c chol.f -o chol.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c corStruct.c -o corStruct.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c gnls.c -o gnls.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c matrix.c -o matrix.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c nlOptimizer.c -o nlOptimizer.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c nlme.c -o nlme.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c nlmefit.c -o nlmefit.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pdMat.c -o pdMat.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pythag.c -o pythag.o gfortran -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c rs.f -o rs.o gcc -shared -L/builddir/build/BUILD/R-3.5.0/lib -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o nlme.so chol.o corStruct.o gnls.o init.o matrix.o nlOptimizer.o nlme.o nlmefit.o pdMat.o pythag.o rs.o -L -L -lgfortran -lm -L/builddir/build/BUILD/R-3.5.0/lib -lR make[3]: Leaving directory '/tmp/RtmpsbRd3o/R.INSTALL6935d2adaf0/nlme/src' installing to /builddir/build/BUILD/R-3.5.0/library/nlme/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'nlme' finding HTML links ... done ACF html ACF.gls html ACF.lme html Alfalfa html Assay html BodyWeight html Cefamandole html Coef html Covariate html Covariate.varFunc html Dialyzer html Dim html Dim.corSpatial html Dim.corStruct html Dim.pdMat html Earthquake html Extract.pdMat html Fatigue html Gasoline html Glucose html Glucose2 html Gun html IGF html Initialize html Initialize.corStruct html Initialize.glsStruct html Initialize.lmeStruct html Initialize.reStruct html Initialize.varFunc html LDEsysMat html Machines html MathAchSchool html MathAchieve html Matrix html Matrix.pdMat html Matrix.reStruct html Meat html Milk html Muscle html Names html Names.formula html Names.pdBlocked html Names.pdMat html Names.reStruct html Nitrendipene html Oats html Orthodont html Ovary html Oxboys html Oxide html PBG html Phenobarb html Pixel html Quinidine html Rail html RatPupWeight html Relaxin html Remifentanil html Soybean html Spruce html Tetracycline1 html Tetracycline2 html VarCorr html Variogram html Variogram.corExp html Variogram.corGaus html Variogram.corLin html Variogram.corRatio html Variogram.corSpatial html Variogram.corSpher html Variogram.default html Variogram.gls html Variogram.lme html Wafer html Wheat html Wheat2 html allCoef html anova.gls html anova.lme html as.matrix.corStruct html as.matrix.pdMat html as.matrix.reStruct html asOneFormula html asTable html augPred html balancedGrouped html bdf html coef.corStruct html coef.gnls html coef.lmList html coef.lme html coef.modelStruct html coef.pdMat html coef.reStruct html coef.varFunc html collapse html collapse.groupedData html compareFits html comparePred html corAR1 html corARMA html corCAR1 html corClasses html corCompSymm html corExp html corFactor html corFactor.corStruct html corGaus html corLin html corMatrix html corMatrix.corStruct html corMatrix.pdMat html corMatrix.reStruct html corNatural html corRatio html corSpatial html corSpher html corSymm html ergoStool html fdHess html fitted.glsStruct html fitted.gnlsStruct html fitted.lmList html fitted.lme html fitted.lmeStruct html fitted.nlmeStruct html fixed.effects html fixef.lmList html formula.pdBlocked html formula.pdMat html formula.reStruct html gapply html getCovariate html getCovariate.corStruct html getCovariate.data.frame html getCovariate.varFunc html getCovariateFormula html getData html getData.gls html getData.lmList html getData.lme html getGroups html getGroups.corStruct html getGroups.data.frame html getGroups.gls html getGroups.lmList html getGroups.lme html getGroups.varFunc html getGroupsFormula html getResponse html getResponseFormula html getVarCov html gls-internal html gls html glsControl html glsObject html glsStruct html gnls html gnlsControl html gnlsObject html gnlsStruct html groupedData html gsummary html intervals html intervals.gls html intervals.lmList html intervals.lme html isBalanced html isInitialized html lmList html lmList.groupedData html lme html lme.groupedData html lme.lmList html lmeControl html lmeObject html lmeStruct html logDet html logDet.corStruct html logDet.pdMat html logDet.reStruct html logLik.corStruct html logLik.glsStruct html logLik.gnls html logLik.gnlsStruct html logLik.lmList html logLik.lme html logLik.lmeStruct html logLik.reStruct html logLik.varFunc html model.matrix.reStruct html needUpdate html needUpdate.modelStruct html nlme html nlme.nlsList html nlmeControl html nlmeObject html nlmeStruct html nlsList html nlsList.selfStart html pairs.compareFits html pairs.lmList html pairs.lme html pdBlocked html pdClasses html pdCompSymm html pdConstruct html pdConstruct.pdBlocked html pdDiag html pdFactor html pdFactor.reStruct html pdIdent html pdLogChol html pdMat html pdMatrix html pdMatrix.reStruct html pdNatural html pdSymm html phenoModel html plot.ACF html plot.Variogram html plot.augPred html plot.compareFits html plot.gls html plot.intervals.lmList html plot.lmList html plot.lme html plot.nffGroupedData html plot.nfnGroupedData html plot.nmGroupedData html plot.ranef.lmList html plot.ranef.lme html pooledSD html predict.gls html predict.gnls html predict.lmList html predict.lme html predict.nlme html print.summary.pdMat html print.varFunc html qqnorm.gls html qqnorm.lme html quinModel html random.effects html ranef.lmList html ranef.lme html reStruct html recalc html recalc.corStruct html recalc.modelStruct html recalc.reStruct html recalc.varFunc html residuals.gls html residuals.glsStruct html residuals.gnlsStruct html residuals.lmList html residuals.lme html residuals.lmeStruct html residuals.nlmeStruct html simulate.lme html solve.pdMat html solve.reStruct html splitFormula html summary.corStruct html summary.gls html summary.lmList html summary.lme html summary.modelStruct html summary.nlsList html summary.pdMat html summary.varFunc html update.modelStruct html update.varFunc html varClasses html varComb html varConstPower html varExp html varFixed html varFunc html varIdent html varPower html varWeights html varWeights.glsStruct html varWeights.lmeStruct html ** building package indices ** testing if installed package can be loaded * DONE (nlme) Making 'packages.html' ... done begin installing recommended package survival * installing *source* package 'survival' ... ** package 'survival' successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory '/tmp/RtmphbuZIW/R.INSTALL6ccd1d9d3e/survival/src' gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c agexact.c -o agexact.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c agfit4.c -o agfit4.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c agfit5.c -o agfit5.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c agmart.c -o agmart.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c agmart2.c -o agmart2.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c agmart3.c -o agmart3.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c agscore.c -o agscore.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c agsurv3.c -o agsurv3.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c agsurv4.c -o agsurv4.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c agsurv5.c -o agsurv5.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c chinv2.c -o chinv2.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c chinv3.c -o chinv3.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c cholesky2.c -o cholesky2.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c cholesky3.c -o cholesky3.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c chsolve2.c -o chsolve2.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c chsolve3.c -o chsolve3.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c concordance1.c -o concordance1.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c cox_Rcallback.c -o cox_Rcallback.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c coxcount1.c -o coxcount1.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c coxdetail.c -o coxdetail.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c coxexact.c -o coxexact.o coxexact.c: In function 'coxexact': coxexact.c:151:17: warning: 'nrisk' may be used uninitialized in this function [-Wmaybe-uninitialized] if (maxdeath*nrisk > temp) temp = maxdeath*nrisk; ~~~~~~~~^~~~~~ coxexact.c:309:48: warning: 'sstart' may be used uninitialized in this function [-Wmaybe-uninitialized] d0 = coxd0(ndeath, nrisk, score+sstart, dmem0, maxdeath); ^ gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c coxfit5.c -o coxfit5.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c coxfit6.c -o coxfit6.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c coxmart.c -o coxmart.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c coxmart2.c -o coxmart2.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c coxph_wtest.c -o coxph_wtest.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c coxsafe.c -o coxsafe.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c coxscho.c -o coxscho.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c coxscore.c -o coxscore.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dmatrix.c -o dmatrix.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c doloop.c -o doloop.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c finegray.c -o finegray.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pyears1.c -o pyears1.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pyears2.c -o pyears2.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pyears3b.c -o pyears3b.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pystep.c -o pystep.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c survConcordance.c -o survConcordance.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c survdiff2.c -o survdiff2.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c survfit4.c -o survfit4.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c survfitci.c -o survfitci.o survfitci.c: In function 'survfitci': survfitci.c:18:14: warning: 'umat' may be used uninitialized in this function [-Wmaybe-uninitialized] double **umat; /* per subject leverage at this time point */ ^~~~ survfitci.c:46:38: warning: 'usave' may be used uninitialized in this function [-Wmaybe-uninitialized] double **pmat, **vmat, *cumhaz, *usave; ^~~~~ gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c survpenal.c -o survpenal.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c survreg6.c -o survreg6.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c survreg7.c -o survreg7.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c survregc1.c -o survregc1.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c survregc2.c -o survregc2.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c survsplit.c -o survsplit.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c tmerge.c -o tmerge.o gcc -shared -L/builddir/build/BUILD/R-3.5.0/lib -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o survival.so agexact.o agfit4.o agfit5.o agmart.o agmart2.o agmart3.o agscore.o agsurv3.o agsurv4.o agsurv5.o chinv2.o chinv3.o cholesky2.o cholesky3.o chsolve2.o chsolve3.o concordance1.o cox_Rcallback.o coxcount1.o coxdetail.o coxexact.o coxfit5.o coxfit6.o coxmart.o coxmart2.o coxph_wtest.o coxsafe.o coxscho.o coxscore.o dmatrix.o doloop.o finegray.o init.o pyears1.o pyears2.o pyears3b.o pystep.o survConcordance.o survdiff2.o survfit4.o survfitci.o survpenal.o survreg6.o survreg7.o survregc1.o survregc2.o survsplit.o tmerge.o -L/builddir/build/BUILD/R-3.5.0/lib -lR make[3]: Leaving directory '/tmp/RtmphbuZIW/R.INSTALL6ccd1d9d3e/survival/src' installing to /builddir/build/BUILD/R-3.5.0/library/survival/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'survival' finding HTML links ... done Surv html aareg html aeqSurv html agreg.fit html aml html anova.coxph html attrassign html basehaz html bladder html cch html cgd html cgd0 html cipoisson html Rd warning: /tmp/RtmphbuZIW/R.INSTALL6ccd1d9d3e/survival/man/cipoisson.Rd:59: file link 'ppois' in package 'stats' does not exist and so has been treated as a topic Rd warning: /tmp/RtmphbuZIW/R.INSTALL6ccd1d9d3e/survival/man/cipoisson.Rd:59: file link 'qpois' in package 'stats' does not exist and so has been treated as a topic clogit html cluster html colon html cox.zph html coxph html coxph.control html coxph.detail html coxph.object html coxph.wtest html dsurvreg html finegray html flchain html frailty html genfan html heart html is.ratetable html kidney html lines.survfit html logLik.coxph html logan html lung html mgus html mgus2 html model.frame.coxph html model.matrix.coxph html myeloid html neardate html nwtco html ovarian html pbc html pbcseq html plot.aareg html plot.cox.zph html plot.survfit html predict.coxph html predict.survreg html print.aareg html print.summary.coxph html print.summary.survexp html print.summary.survfit html print.survfit html pspline html pyears html quantile.survfit html ratetable html ratetableDate html rats html rats2 html residuals.coxph html residuals.survreg html retinopathy html rhDNase html ridge html stanford2 html statefig html strata html summary.aareg html summary.coxph html summary.pyears html summary.survexp html summary.survfit html survConcordance html survSplit html survdiff html survexp html survexp.fit html survexp.object html survexp.us html survfit html survfit.coxph html survfit.formula html survfit.matrix html survfit.object html survfitcoxph.fit html survival-internal html survobrien html survreg html survreg.control html survreg.distributions html survreg.object html survregDtest html tcut html tmerge html tobin html transplant html untangle.specials html uspop2 html veteran html ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (survival) Making 'packages.html' ... done begin installing recommended package boot * installing *source* package 'boot' ... ** package 'boot' successfully unpacked and MD5 sums checked ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'boot' finding HTML links ... done EEF.profile html Imp.Estimates html abc.ci html acme html aids html aircondit html amis html aml html beaver html bigcity html boot-practicals html boot html boot.array html boot.ci html brambles html breslow html calcium html cane html capability html catsM html cav html cd4 html cd4.nested html censboot html channing html claridge html cloth html co.transfer html coal html control html corr html cum3 html cv.glm html darwin html dogs html downs.bc html ducks html empinf html envelope html exp.tilt html fir html freq.array html frets html glm.diag html glm.diag.plots html gravity html hirose html imp.weights html inv.logit html islay html jack.after.boot html k3.linear html linear.approx html lines.saddle.distn html logit html manaus html melanoma html motor html neuro html nitrofen html nodal html norm.ci html nuclear html paulsen html plot.boot html poisons html polar html print.boot html print.bootci html print.saddle.distn html print.simplex html remission html saddle html saddle.distn html saddle.distn.object html salinity html simplex html simplex.object html smooth.f html sunspot html survival html tau html tilt.boot html tsboot html tuna html urine html var.linear html wool html ** building package indices ** testing if installed package can be loaded * DONE (boot) Making 'packages.html' ... done begin installing recommended package cluster * installing *source* package 'cluster' ... ** package 'cluster' successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory '/tmp/Rtmp8nNaCY/R.INSTALL78565b19095/cluster/src' gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c clara.c -o clara.o gfortran -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c daisy.f -o daisy.o gfortran -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c dysta.f -o dysta.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c fanny.c -o fanny.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c mona.c -o mona.o mona.c: In function 'clmona_': mona.c:261:10: warning: 'nelbb' may be used uninitialized in this function [-Wmaybe-uninitialized] ner[k] = nelbb; ~~~~~~~^~~~~~~ mona.c:248:7: warning: 'lcc' may be used uninitialized in this function [-Wmaybe-uninitialized] int lcc, nelbb; ^~~ mona.c:234:6: warning: 'jtelz' may be used uninitialized in this function [-Wmaybe-uninitialized] int jres = kb - ka + 1 - jtel2, ^~~~ mona.c:234:6: warning: 'jtel' may be used uninitialized in this function [-Wmaybe-uninitialized] mona.c:227:18: warning: 'jma' may be used uninitialized in this function [-Wmaybe-uninitialized] if (x[nel + jma * x_dim1] == 1) { ~~~~^~~~~~~~ mona.c:211:8: warning: 'd' may be used uninitialized in this function [-Wmaybe-uninitialized] jtel = c + d; ~~~~~^~~~~~~ mona.c:211:8: warning: 'c' may be used uninitialized in this function [-Wmaybe-uninitialized] mona.c:212:9: warning: 'b' may be used uninitialized in this function [-Wmaybe-uninitialized] jtelz = a + b; ~~~~~~^~~~~~~ mona.c:212:9: warning: 'a' may be used uninitialized in this function [-Wmaybe-uninitialized] gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pam.c -o pam.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c sildist.c -o sildist.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c spannel.c -o spannel.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c twins.c -o twins.o gcc -shared -L/builddir/build/BUILD/R-3.5.0/lib -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o cluster.so clara.o daisy.o dysta.o fanny.o init.o mona.o pam.o sildist.o spannel.o twins.o -L -L -lgfortran -lm -L/builddir/build/BUILD/R-3.5.0/lib -lR make[3]: Leaving directory '/tmp/Rtmp8nNaCY/R.INSTALL78565b19095/cluster/src' installing to /builddir/build/BUILD/R-3.5.0/library/cluster/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'cluster' finding HTML links ... done agnes html agnes.object html agriculture html animals html bannerplot html chorSub html clara html clara.object html clusGap html clusplot.default html Rd warning: /tmp/Rtmp8nNaCY/R.INSTALL78565b19095/cluster/man/clusplot.default.Rd:212: file link 'cov.mve' in package 'MASS' does not exist and so has been treated as a topic clusplot.partition html cluster-internal html coef.hclust html daisy html diana html dissimilarity.object html ellipsoidhull html Rd warning: /tmp/Rtmp8nNaCY/R.INSTALL78565b19095/cluster/man/ellipsoidhull.Rd:36: file link 'cov.mve' in package 'MASS' does not exist and so has been treated as a topic Rd warning: /tmp/Rtmp8nNaCY/R.INSTALL78565b19095/cluster/man/ellipsoidhull.Rd:87: file link 'cov.mve' in package 'MASS' does not exist and so has been treated as a topic fanny html fanny.object html flower html lower.to.upper.tri.inds html mona html mona.object html pam html pam.object html partition.object html plantTraits html plot.agnes html Rd warning: /tmp/Rtmp8nNaCY/R.INSTALL78565b19095/cluster/man/plot.agnes.Rd:73: file link 'plot.dendrogram' in package 'stats' does not exist and so has been treated as a topic plot.diana html plot.mona html plot.partition html pltree html pluton html predict.ellipsoid html print.agnes html print.clara html print.diana html print.dissimilarity html Rd warning: /tmp/Rtmp8nNaCY/R.INSTALL78565b19095/cluster/man/print.dissimilarity.Rd:27: file link 'print.dist' in package 'stats' does not exist and so has been treated as a topic print.fanny html print.mona html print.pam html ruspini html silhouette html sizeDiss html summary.agnes html summary.clara html summary.diana html summary.mona html summary.pam html twins.object html volume.ellipsoid html votes.repub html xclara html ** building package indices ** testing if installed package can be loaded * DONE (cluster) Making 'packages.html' ... done begin installing recommended package codetools * installing *source* package 'codetools' ... ** package 'codetools' successfully unpacked and MD5 sums checked ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'codetools' finding HTML links ... done checkUsage html codetools html findGlobals html showTree html ** building package indices ** testing if installed package can be loaded * DONE (codetools) Making 'packages.html' ... done begin installing recommended package foreign * installing *source* package 'foreign' ... ** package 'foreign' successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory '/tmp/RtmpAdICDM/R.INSTALL7ca3fd499fa/foreign/src' gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c R_systat.c -o R_systat.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c Rdbfread.c -o Rdbfread.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c Rdbfwrite.c -o Rdbfwrite.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c SASxport.c -o SASxport.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c avl.c -o avl.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dbfopen.c -o dbfopen.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c file-handle.c -o file-handle.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c format.c -o format.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c minitab.c -o minitab.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pfm-read.c -o pfm-read.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c sfm-read.c -o sfm-read.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c spss.c -o spss.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c stataread.c -o stataread.o gcc -shared -L/builddir/build/BUILD/R-3.5.0/lib -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o foreign.so R_systat.o Rdbfread.o Rdbfwrite.o SASxport.o avl.o dbfopen.o file-handle.o format.o init.o minitab.o pfm-read.o sfm-read.o spss.o stataread.o -L/builddir/build/BUILD/R-3.5.0/lib -lR make[3]: Leaving directory '/tmp/RtmpAdICDM/R.INSTALL7ca3fd499fa/foreign/src' installing to /builddir/build/BUILD/R-3.5.0/library/foreign/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'foreign' finding HTML links ... done lookup.xport html read.S html read.arff html read.dbf html read.dta html read.epiinfo html read.mtp html read.octave html read.spss html read.ssd html read.systat html read.xport html write.arff html write.dbf html write.dta html write.foreign html ** building package indices ** testing if installed package can be loaded * DONE (foreign) Making 'packages.html' ... done begin installing recommended package KernSmooth * installing *source* package 'KernSmooth' ... ** package 'KernSmooth' successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory '/tmp/RtmpEdrmwh/R.INSTALL80a4ad9342b/KernSmooth/src' gfortran -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c blkest.f -o blkest.o gfortran -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c cp.f -o cp.o gfortran -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c dgedi.f -o dgedi.o gfortran -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c dgefa.f -o dgefa.o gfortran -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c dgesl.f -o dgesl.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o gfortran -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c linbin.f -o linbin.o gfortran -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c linbin2D.f -o linbin2D.o gfortran -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c locpoly.f -o locpoly.o gfortran -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c rlbin.f -o rlbin.o gfortran -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c sdiag.f -o sdiag.o gfortran -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -c sstdiag.f -o sstdiag.o gcc -shared -L/builddir/build/BUILD/R-3.5.0/lib -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o KernSmooth.so blkest.o cp.o dgedi.o dgefa.o dgesl.o init.o linbin.o linbin2D.o locpoly.o rlbin.o sdiag.o sstdiag.o -L/builddir/build/BUILD/R-3.5.0/lib -lRblas -L -L -lgfortran -lm -L -L -lgfortran -lm -L/builddir/build/BUILD/R-3.5.0/lib -lR make[3]: Leaving directory '/tmp/RtmpEdrmwh/R.INSTALL80a4ad9342b/KernSmooth/src' installing to /builddir/build/BUILD/R-3.5.0/library/KernSmooth/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'KernSmooth' finding HTML links ... done bkde html bkde2D html bkfe html dpih html dpik html dpill html locpoly html ** building package indices ** testing if installed package can be loaded * DONE (KernSmooth) Making 'packages.html' ... done begin installing recommended package rpart * installing *source* package 'rpart' ... ** package 'rpart' successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory '/tmp/RtmpYwIaKS/R.INSTALL8444a18a5fe/rpart/src' gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c anova.c -o anova.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c anovapred.c -o anovapred.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c branch.c -o branch.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c bsplit.c -o bsplit.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c choose_surg.c -o choose_surg.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c fix_cp.c -o fix_cp.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c free_tree.c -o free_tree.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c gini.c -o gini.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c graycode.c -o graycode.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c insert_split.c -o insert_split.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c make_cp_list.c -o make_cp_list.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c make_cp_table.c -o make_cp_table.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c mysort.c -o mysort.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c nodesplit.c -o nodesplit.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c partition.c -o partition.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c poisson.c -o poisson.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pred_rpart.c -o pred_rpart.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c print_tree.c -o print_tree.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rpart.c -o rpart.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rpart_callback.c -o rpart_callback.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rpartexp.c -o rpartexp.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rpartexp2.c -o rpartexp2.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rpcountup.c -o rpcountup.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rpmatrix.c -o rpmatrix.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rundown.c -o rundown.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rundown2.c -o rundown2.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c surrogate.c -o surrogate.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c usersplit.c -o usersplit.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c xpred.c -o xpred.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c xval.c -o xval.o gcc -shared -L/builddir/build/BUILD/R-3.5.0/lib -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o rpart.so anova.o anovapred.o branch.o bsplit.o choose_surg.o fix_cp.o free_tree.o gini.o graycode.o init.o insert_split.o make_cp_list.o make_cp_table.o mysort.o nodesplit.o partition.o poisson.o pred_rpart.o print_tree.o rpart.o rpart_callback.o rpartexp.o rpartexp2.o rpcountup.o rpmatrix.o rundown.o rundown2.o surrogate.o usersplit.o xpred.o xval.o -L/builddir/build/BUILD/R-3.5.0/lib -lR make[3]: Leaving directory '/tmp/RtmpYwIaKS/R.INSTALL8444a18a5fe/rpart/src' installing to /builddir/build/BUILD/R-3.5.0/library/rpart/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rpart' finding HTML links ... done car.test.frame html car90 html cu.summary html kyphosis html labels.rpart html meanvar.rpart html na.rpart html path.rpart html plot.rpart html plotcp html post.rpart html predict.rpart html print.rpart html printcp html prune.rpart html residuals.rpart html rpart-internal html rpart html rpart.control html rpart.exp html rpart.object html rsq.rpart html snip.rpart html solder html stagec html summary.rpart html text.rpart html xpred.rpart html ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (rpart) Making 'packages.html' ... done begin installing recommended package class * installing *source* package 'class' ... ** package 'class' successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory '/tmp/RtmpOKf6ce/R.INSTALL8b81ee1181/class/src' gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c class.c -o class.o gcc -shared -L/builddir/build/BUILD/R-3.5.0/lib -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o class.so class.o -L/builddir/build/BUILD/R-3.5.0/lib -lR make[3]: Leaving directory '/tmp/RtmpOKf6ce/R.INSTALL8b81ee1181/class/src' installing to /builddir/build/BUILD/R-3.5.0/library/class/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'class' finding HTML links ... done SOM html batchSOM html condense html knn html knn.cv html knn1 html lvq1 html lvq2 html lvq3 html lvqinit html lvqtest html multiedit html olvq1 html reduce.nn html somgrid html ** building package indices ** testing if installed package can be loaded * DONE (class) Making 'packages.html' ... done begin installing recommended package nnet * installing *source* package 'nnet' ... ** package 'nnet' successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory '/tmp/RtmpF6s786/R.INSTALL8d24e5e2fb4/nnet/src' gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c nnet.c -o nnet.o gcc -shared -L/builddir/build/BUILD/R-3.5.0/lib -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o nnet.so nnet.o -L/builddir/build/BUILD/R-3.5.0/lib -lR make[3]: Leaving directory '/tmp/RtmpF6s786/R.INSTALL8d24e5e2fb4/nnet/src' installing to /builddir/build/BUILD/R-3.5.0/library/nnet/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'nnet' finding HTML links ... done class.ind html multinom html nnet.Hess html nnet html predict.nnet html which.is.max html ** building package indices ** testing if installed package can be loaded * DONE (nnet) Making 'packages.html' ... done begin installing recommended package spatial * installing *source* package 'spatial' ... ** package 'spatial' successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory '/tmp/RtmpQ9mOhX/R.INSTALL8eb4e0cf8dd/spatial/src' gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c krc.c -o krc.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pps.c -o pps.o gcc -shared -L/builddir/build/BUILD/R-3.5.0/lib -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o spatial.so init.o krc.o pps.o -L/builddir/build/BUILD/R-3.5.0/lib -lR make[3]: Leaving directory '/tmp/RtmpQ9mOhX/R.INSTALL8eb4e0cf8dd/spatial/src' installing to /builddir/build/BUILD/R-3.5.0/library/spatial/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'spatial' finding HTML links ... done Kaver html Kenvl html Kfn html Psim html SSI html Strauss html anova.trls html correlogram html expcov html ppgetregion html ppinit html pplik html ppregion html predict.trls html prmat html semat html surf.gls html surf.ls html trls.influence html trmat html variogram html ** building package indices ** testing if installed package can be loaded * DONE (spatial) Making 'packages.html' ... done begin installing recommended package mgcv * installing *source* package 'mgcv' ... ** package 'mgcv' successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory '/tmp/RtmpCINupd/R.INSTALL90a5aa70118/mgcv/src' gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c coxph.c -o coxph.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c discrete.c -o discrete.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c gdi.c -o gdi.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c magic.c -o magic.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c mat.c -o mat.o mat.c: In function 'Rlanczos': mat.c:2844:15: warning: 'cir' may be used uninitialized in this function [-Wmaybe-uninitialized] #pragma omp parallel private(i,ri) num_threads(*nt) ^~~ gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c matrix.c -o matrix.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c mgcv.c -o mgcv.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c misc.c -o misc.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c mvn.c -o mvn.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qp.c -o qp.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c soap.c -o soap.o gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c sparse-smooth.c -o sparse-smooth.o sparse-smooth.c: In function 'Rkradius': sparse-smooth.c:768:17: warning: unused variable 'dis' [-Wunused-variable] double *X,*x,*dis,*r,*xx,*ddat; ^~~ sparse-smooth.c: In function 'Rkdnearest': sparse-smooth.c:996:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (!dim_sym) dim_sym = install("dim");if (!dist_sym) dist_sym = install("dist"); ^~ sparse-smooth.c:996:42: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (!dim_sym) dim_sym = install("dim");if (!dist_sym) dist_sym = install("dist"); ^~ gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c tprs.c -o tprs.o gcc -shared -L/builddir/build/BUILD/R-3.5.0/lib -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o mgcv.so coxph.o discrete.o gdi.o init.o magic.o mat.o matrix.o mgcv.o misc.o mvn.o qp.o soap.o sparse-smooth.o tprs.o -L/builddir/build/BUILD/R-3.5.0/lib -lRlapack -L/builddir/build/BUILD/R-3.5.0/lib -lRblas -L -L -lgfortran -lm -fopenmp -L/builddir/build/BUILD/R-3.5.0/lib -lR make[3]: Leaving directory '/tmp/RtmpCINupd/R.INSTALL90a5aa70118/mgcv/src' installing to /builddir/build/BUILD/R-3.5.0/library/mgcv/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'mgcv' finding HTML links ... done Beta html Predict.matrix html Predict.matrix.cr.smooth html Predict.matrix.soap.film html Rrank html Sl.initial.repara html Sl.repara html Sl.setup html Tweedie html anova.gam html bam html Rd warning: /tmp/RtmpCINupd/R.INSTALL90a5aa70118/mgcv/man/bam.Rd:14: file link 'parallel' in package 'parallel' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpCINupd/R.INSTALL90a5aa70118/mgcv/man/bam.Rd:129: file link 'parLapply' in package 'parallel' does not exist and so has been treated as a topic Rd warning: /tmp/RtmpCINupd/R.INSTALL90a5aa70118/mgcv/man/bam.Rd:188: file link 'makeForkCluster' in package 'parallel' does not exist and so has been treated as a topic bam.update html bandchol html bug.reports.mgcv html cSplineDes html choose.k html columb html concurvity html coxph html coxpht html dDeta html exclude.too.far html extract.lme.cov html family.mgcv html fix.family.link html fixDependence html formXtViX html formula.gam html fs.test html full.score html gam html gam.check html gam.control html gam.convergence html gam.fit html gam.fit3 html gam.fit5.post.proc html gam.models html gam.outer html gam.reparam html gam.scale html gam.selection html gam.side html gam.vcomp html gam2objective html gamObject html gamSim html gamlss.etamu html gamlss.gH html gamm html gaulss html get.var html gevlss html identifiability html in.out html inSide html influence.gam html initial.sp html interpret.gam html jagam html ldTweedie html ldetS html linear.functional.terms html logLik.gam html ls.size html magic html magic.post.proc html mgcv-FAQ html mgcv-package html mgcv-parallel html Rd warning: /tmp/RtmpCINupd/R.INSTALL90a5aa70118/mgcv/man/mgcv-parallel.Rd:11: file link 'parallel' in package 'parallel' does not exist and so has been treated as a topic mini.roots html missing.data html model.matrix.gam html mono.con html mroot html multinom html mvn html negbin html new.name html notExp html notExp2 html null.space.dimension html ocat html one.se.rule html pcls html pdIdnot html pdTens html pen.edf html place.knots html plot.gam html polys.plot html predict.bam html Rd warning: /tmp/RtmpCINupd/R.INSTALL90a5aa70118/mgcv/man/predict.bam.Rd:76: file link 'parLapply' in package 'parallel' does not exist and so has been treated as a topic predict.gam html print.gam html qq.gam html rTweedie html random.effects html residuals.gam html rig html rmvn html s html scat html sdiag html single.index html slanczos html smooth.construct html smooth.construct.ad.smooth.spec html smooth.construct.bs.smooth.spec html smooth.construct.cr.smooth.spec html smooth.construct.ds.smooth.spec html smooth.construct.fs.smooth.spec html smooth.construct.gp.smooth.spec html smooth.construct.mrf.smooth.spec html smooth.construct.ps.smooth.spec html smooth.construct.re.smooth.spec html smooth.construct.so.smooth.spec html smooth.construct.sos.smooth.spec html smooth.construct.t2.smooth.spec html smooth.construct.tensor.smooth.spec html smooth.construct.tp.smooth.spec html smooth.terms html smooth2random html smoothCon html sp.vcov html spasm.construct html step.gam html summary.gam html t2 html te html tensor.prod.model.matrix html totalPenaltySpace html trichol html trind.generator html uniquecombs html vcov.gam html vis.gam html ziP html ziplss html ** building package indices ** testing if installed package can be loaded * DONE (mgcv) Making 'packages.html' ... done make[2]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/Recommended' make[1]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library/Recommended' make[1]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/library' building/updating vignettes for package 'grid' ... building/updating vignettes for package 'parallel' ... building/updating vignettes for package 'utils' ... make[1]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/library' make[1]: Entering directory '/builddir/build/BUILD/R-3.5.0' configuring Java ... Java interpreter : /usr/bin/java Java version : 1.8.0_144 Java home path : /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.144-1.riscv64.7.b01.fc28.riscv64/jre Java compiler : not present Java headers gen.: Java archive tool: trying to compile and link a JNI program detected JNI cpp flags : detected JNI linker flags : -L$(JAVA_HOME)/lib/riscv64/server -ljvm make[2]: Entering directory '/tmp/Rjavareconf.NXTMaZ' gcc -I"/builddir/build/BUILD/R-3.5.0/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c conftest.c -o conftest.o BUILDSTDERR: conftest.c:1:10: fatal error: jni.h: No such file or directory BUILDSTDERR: #include BUILDSTDERR: ^~~~~~~ BUILDSTDERR: compilation terminated. make[2]: Leaving directory '/tmp/Rjavareconf.NXTMaZ' BUILDSTDERR: make[2]: *** [/builddir/build/BUILD/R-3.5.0/etc/Makeconf:159: conftest.o] Error 1 Unable to compile a JNI program JAVA_HOME : /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.144-1.riscv64.7.b01.fc28.riscv64/jre Java library path: JNI cpp flags : JNI linker flags : Updating Java configuration in /builddir/build/BUILD/R-3.5.0 Done. make[1]: Leaving directory '/builddir/build/BUILD/R-3.5.0' + cd src/nmath/standalone + make (cd ../../include; make Rmath.h) make[1]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/include' make[1]: 'Rmath.h' is up to date. make[1]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/include' Copying source files make[1]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/nmath/standalone' making mlutils.d from mlutils.c making d1mach.d from d1mach.c making i1mach.d from i1mach.c making fmax2.d from fmax2.c making fmin2.d from fmin2.c making fprec.d from fprec.c making fround.d from fround.c making ftrunc.d from ftrunc.c making sign.d from sign.c making fsign.d from fsign.c making imax2.d from imax2.c making imin2.d from imin2.c making chebyshev.d from chebyshev.c making log1p.d from log1p.c making lgammacor.d from lgammacor.c making gammalims.d from gammalims.c making stirlerr.d from stirlerr.c making bd0.d from bd0.c making gamma.d from gamma.c making lgamma.d from lgamma.c making gamma_cody.d from gamma_cody.c making beta.d from beta.c making lbeta.d from lbeta.c making polygamma.d from polygamma.c making cospi.d from cospi.c making bessel_i.d from bessel_i.c making bessel_j.d from bessel_j.c making bessel_k.d from bessel_k.c making bessel_y.d from bessel_y.c making choose.d from choose.c making snorm.d from snorm.c making sexp.d from sexp.c making dgamma.d from dgamma.c making pgamma.d from pgamma.c making qgamma.d from qgamma.c making rgamma.d from rgamma.c making dbeta.d from dbeta.c making pbeta.d from pbeta.c making qbeta.d from qbeta.c making rbeta.d from rbeta.c making dunif.d from dunif.c making punif.d from punif.c making qunif.d from qunif.c making runif.d from runif.c making dnorm.d from dnorm.c making pnorm.d from pnorm.c making qnorm.d from qnorm.c making rnorm.d from rnorm.c making dlnorm.d from dlnorm.c making plnorm.d from plnorm.c making qlnorm.d from qlnorm.c making rlnorm.d from rlnorm.c making df.d from df.c making pf.d from pf.c making qf.d from qf.c making rf.d from rf.c making dnf.d from dnf.c making dt.d from dt.c making pt.d from pt.c making qt.d from qt.c making rt.d from rt.c making dnt.d from dnt.c making dchisq.d from dchisq.c making pchisq.d from pchisq.c making qchisq.d from qchisq.c making rchisq.d from rchisq.c making rnchisq.d from rnchisq.c making dbinom.d from dbinom.c making pbinom.d from pbinom.c making qbinom.d from qbinom.c making rbinom.d from rbinom.c making rmultinom.d from rmultinom.c making dcauchy.d from dcauchy.c making pcauchy.d from pcauchy.c making qcauchy.d from qcauchy.c making rcauchy.d from rcauchy.c making dexp.d from dexp.c making pexp.d from pexp.c making qexp.d from qexp.c making rexp.d from rexp.c making dgeom.d from dgeom.c making pgeom.d from pgeom.c making qgeom.d from qgeom.c making rgeom.d from rgeom.c making dhyper.d from dhyper.c making phyper.d from phyper.c making qhyper.d from qhyper.c making rhyper.d from rhyper.c making dnbinom.d from dnbinom.c making pnbinom.d from pnbinom.c making qnbinom.d from qnbinom.c making rnbinom.d from rnbinom.c making dpois.d from dpois.c making ppois.d from ppois.c making qpois.d from qpois.c making rpois.d from rpois.c making dweibull.d from dweibull.c making pweibull.d from pweibull.c making qweibull.d from qweibull.c making rweibull.d from rweibull.c making dlogis.d from dlogis.c making plogis.d from plogis.c making qlogis.d from qlogis.c making rlogis.d from rlogis.c making dnchisq.d from dnchisq.c making pnchisq.d from pnchisq.c making qnchisq.d from qnchisq.c making dnbeta.d from dnbeta.c making pnbeta.d from pnbeta.c making qnbeta.d from qnbeta.c making pnf.d from pnf.c making pnt.d from pnt.c making qnf.d from qnf.c making qnt.d from qnt.c making ptukey.d from ptukey.c making qtukey.d from qtukey.c making toms708.d from toms708.c making wilcox.d from wilcox.c making signrank.d from signrank.c making std_unif.d from std_unif.c make[1]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/nmath/standalone' make[1]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c mlutils.c -o mlutils.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c d1mach.c -o d1mach.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c i1mach.c -o i1mach.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c fmax2.c -o fmax2.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c fmin2.c -o fmin2.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c fprec.c -o fprec.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c fround.c -o fround.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ftrunc.c -o ftrunc.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c sign.c -o sign.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c fsign.c -o fsign.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c imax2.c -o imax2.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c imin2.c -o imin2.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c chebyshev.c -o chebyshev.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c log1p.c -o log1p.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c lgammacor.c -o lgammacor.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c gammalims.c -o gammalims.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c stirlerr.c -o stirlerr.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c bd0.c -o bd0.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c gamma.c -o gamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c lgamma.c -o lgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c gamma_cody.c -o gamma_cody.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c beta.c -o beta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c lbeta.c -o lbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c polygamma.c -o polygamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c cospi.c -o cospi.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c bessel_i.c -o bessel_i.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c bessel_j.c -o bessel_j.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c bessel_k.c -o bessel_k.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c bessel_y.c -o bessel_y.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c choose.c -o choose.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c snorm.c -o snorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c sexp.c -o sexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dgamma.c -o dgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pgamma.c -o pgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qgamma.c -o qgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rgamma.c -o rgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dbeta.c -o dbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pbeta.c -o pbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qbeta.c -o qbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rbeta.c -o rbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dunif.c -o dunif.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c punif.c -o punif.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qunif.c -o qunif.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c runif.c -o runif.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dnorm.c -o dnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pnorm.c -o pnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qnorm.c -o qnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rnorm.c -o rnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dlnorm.c -o dlnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c plnorm.c -o plnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qlnorm.c -o qlnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rlnorm.c -o rlnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c df.c -o df.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pf.c -o pf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qf.c -o qf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rf.c -o rf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dnf.c -o dnf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dt.c -o dt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pt.c -o pt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qt.c -o qt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rt.c -o rt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dnt.c -o dnt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dchisq.c -o dchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pchisq.c -o pchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qchisq.c -o qchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rchisq.c -o rchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rnchisq.c -o rnchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dbinom.c -o dbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pbinom.c -o pbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qbinom.c -o qbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rbinom.c -o rbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rmultinom.c -o rmultinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dcauchy.c -o dcauchy.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pcauchy.c -o pcauchy.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qcauchy.c -o qcauchy.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rcauchy.c -o rcauchy.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dexp.c -o dexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pexp.c -o pexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qexp.c -o qexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rexp.c -o rexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dgeom.c -o dgeom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pgeom.c -o pgeom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qgeom.c -o qgeom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rgeom.c -o rgeom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dhyper.c -o dhyper.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c phyper.c -o phyper.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qhyper.c -o qhyper.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rhyper.c -o rhyper.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dnbinom.c -o dnbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pnbinom.c -o pnbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qnbinom.c -o qnbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rnbinom.c -o rnbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dpois.c -o dpois.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ppois.c -o ppois.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qpois.c -o qpois.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rpois.c -o rpois.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dweibull.c -o dweibull.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pweibull.c -o pweibull.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qweibull.c -o qweibull.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rweibull.c -o rweibull.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dlogis.c -o dlogis.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c plogis.c -o plogis.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qlogis.c -o qlogis.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rlogis.c -o rlogis.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dnchisq.c -o dnchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pnchisq.c -o pnchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qnchisq.c -o qnchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dnbeta.c -o dnbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pnbeta.c -o pnbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qnbeta.c -o qnbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pnf.c -o pnf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pnt.c -o pnt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qnf.c -o qnf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qnt.c -o qnt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ptukey.c -o ptukey.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qtukey.c -o qtukey.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c toms708.c -o toms708.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c wilcox.c -o wilcox.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c signrank.c -o signrank.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c std_unif.c -o std_unif.o ar -cr libRmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o std_unif.o ranlib libRmath.a make[1]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/nmath/standalone' make[1]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c mlutils.c -o mlutils.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c d1mach.c -o d1mach.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c i1mach.c -o i1mach.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c fmax2.c -o fmax2.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c fmin2.c -o fmin2.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c fprec.c -o fprec.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c fround.c -o fround.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ftrunc.c -o ftrunc.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c sign.c -o sign.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c fsign.c -o fsign.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c imax2.c -o imax2.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c imin2.c -o imin2.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c chebyshev.c -o chebyshev.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c log1p.c -o log1p.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c lgammacor.c -o lgammacor.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c gammalims.c -o gammalims.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c stirlerr.c -o stirlerr.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c bd0.c -o bd0.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c gamma.c -o gamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c lgamma.c -o lgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c gamma_cody.c -o gamma_cody.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c beta.c -o beta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c lbeta.c -o lbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c polygamma.c -o polygamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c cospi.c -o cospi.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c bessel_i.c -o bessel_i.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c bessel_j.c -o bessel_j.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c bessel_k.c -o bessel_k.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c bessel_y.c -o bessel_y.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c choose.c -o choose.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c snorm.c -o snorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c sexp.c -o sexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dgamma.c -o dgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pgamma.c -o pgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qgamma.c -o qgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rgamma.c -o rgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dbeta.c -o dbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pbeta.c -o pbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qbeta.c -o qbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rbeta.c -o rbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dunif.c -o dunif.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c punif.c -o punif.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qunif.c -o qunif.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c runif.c -o runif.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dnorm.c -o dnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pnorm.c -o pnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qnorm.c -o qnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rnorm.c -o rnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dlnorm.c -o dlnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c plnorm.c -o plnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qlnorm.c -o qlnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rlnorm.c -o rlnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c df.c -o df.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pf.c -o pf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qf.c -o qf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rf.c -o rf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dnf.c -o dnf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dt.c -o dt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pt.c -o pt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qt.c -o qt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rt.c -o rt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dnt.c -o dnt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dchisq.c -o dchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pchisq.c -o pchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qchisq.c -o qchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rchisq.c -o rchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rnchisq.c -o rnchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dbinom.c -o dbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pbinom.c -o pbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qbinom.c -o qbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rbinom.c -o rbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rmultinom.c -o rmultinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dcauchy.c -o dcauchy.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pcauchy.c -o pcauchy.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qcauchy.c -o qcauchy.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rcauchy.c -o rcauchy.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dexp.c -o dexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pexp.c -o pexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qexp.c -o qexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rexp.c -o rexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dgeom.c -o dgeom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pgeom.c -o pgeom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qgeom.c -o qgeom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rgeom.c -o rgeom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dhyper.c -o dhyper.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c phyper.c -o phyper.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qhyper.c -o qhyper.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rhyper.c -o rhyper.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dnbinom.c -o dnbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pnbinom.c -o pnbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qnbinom.c -o qnbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rnbinom.c -o rnbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dpois.c -o dpois.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ppois.c -o ppois.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qpois.c -o qpois.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rpois.c -o rpois.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dweibull.c -o dweibull.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pweibull.c -o pweibull.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qweibull.c -o qweibull.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rweibull.c -o rweibull.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dlogis.c -o dlogis.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c plogis.c -o plogis.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qlogis.c -o qlogis.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rlogis.c -o rlogis.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dnchisq.c -o dnchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pnchisq.c -o pnchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qnchisq.c -o qnchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c dnbeta.c -o dnbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pnbeta.c -o pnbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qnbeta.c -o qnbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pnf.c -o pnf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c pnt.c -o pnt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qnf.c -o qnf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qnt.c -o qnt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ptukey.c -o ptukey.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c qtukey.c -o qtukey.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c toms708.c -o toms708.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c wilcox.c -o wilcox.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c signrank.c -o signrank.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c std_unif.c -o std_unif.lo gcc -shared -fopenmp -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o libRmath.so mlutils.lo d1mach.lo i1mach.lo fmax2.lo fmin2.lo fprec.lo fround.lo ftrunc.lo sign.lo fsign.lo imax2.lo imin2.lo chebyshev.lo log1p.lo lgammacor.lo gammalims.lo stirlerr.lo bd0.lo gamma.lo lgamma.lo gamma_cody.lo beta.lo lbeta.lo polygamma.lo cospi.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_y.lo choose.lo snorm.lo sexp.lo dgamma.lo pgamma.lo qgamma.lo rgamma.lo dbeta.lo pbeta.lo qbeta.lo rbeta.lo dunif.lo punif.lo qunif.lo runif.lo dnorm.lo pnorm.lo qnorm.lo rnorm.lo dlnorm.lo plnorm.lo qlnorm.lo rlnorm.lo df.lo pf.lo qf.lo rf.lo dnf.lo dt.lo pt.lo qt.lo rt.lo dnt.lo dchisq.lo pchisq.lo qchisq.lo rchisq.lo rnchisq.lo dbinom.lo pbinom.lo qbinom.lo rbinom.lo rmultinom.lo dcauchy.lo pcauchy.lo qcauchy.lo rcauchy.lo dexp.lo pexp.lo qexp.lo rexp.lo dgeom.lo pgeom.lo qgeom.lo rgeom.lo dhyper.lo phyper.lo qhyper.lo rhyper.lo dnbinom.lo pnbinom.lo qnbinom.lo rnbinom.lo dpois.lo ppois.lo qpois.lo rpois.lo dweibull.lo pweibull.lo qweibull.lo rweibull.lo dlogis.lo plogis.lo qlogis.lo rlogis.lo dnchisq.lo pnchisq.lo qnchisq.lo dnbeta.lo pnbeta.lo qnbeta.lo pnf.lo pnt.lo qnf.lo qnt.lo ptukey.lo qtukey.lo toms708.lo wilcox.lo signrank.lo std_unif.lo -lm make[1]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/nmath/standalone' + make pdf make[1]: Entering directory '/builddir/build/BUILD/R-3.5.0/doc' make[2]: Entering directory '/builddir/build/BUILD/R-3.5.0/doc/manual' creating doc/manual/version.tex collecting LaTeX docs for package 'base' ... 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BUILDSTDERR: Converting parsed Rd's to LaTeX ............. PDF/LaTeX documentation: full reference index ... This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2018) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./fullrefman.tex LaTeX2e <2017-04-15> Babel <3.17> and hyphenation patterns for 3 language(s) loaded. 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(/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/usr/share/texliv e/texmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [1] [2] [1] [2] (./base-pkg.tex Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd) [3] [4] Underfull \hbox (badness 2547) in paragraph at lines 141--149 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1 /ptm/m/n/10 such that \T1/zi4/m/n/10 1 - x != 1\T1/ptm/m/n/10 . Underfull \hbox (badness 10000) in paragraph at lines 141--149 \T1/ptm/m/n/10 It equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1 /ptm/m/n/10 if Underfull \hbox (badness 10000) in paragraph at lines 141--149 \T1/zi4/m/n/10 double.base \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.roundin g \T1/ptm/m/n/10 is 0; oth-er-wise, it is Underfull \hbox (badness 1668) in paragraph at lines 152--159 []\T1/ptm/m/n/10 the largest nor-mal-ized floating-point num-ber. Typ-i-cally, it is equal to [5] [6] Underfull \hbox (badness 1178) in paragraph at lines 297--301 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/ 10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues [7] [8] Underfull \hbox (badness 3977) in paragraph at lines 386--389 []\T1/ptm/m/n/10 logical: should \T1/zi4/m/n/10 minlength \T1/ptm/m/n/10 be ob- served strictly? Note that set-ting [9] [10] Underfull \hbox (badness 2556) in paragraph at lines 534--540 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ', [11] [12] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [13] [14] [15] [16] [17] [18] Underfull \hbox (badness 2671) in paragraph at lines 1145--1148 []\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec- tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis t of length [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] Overfull \hbox (26.27782pt too wide) in paragraph at lines 1920--1920 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [30] [31] [32] Underfull \hbox (badness 10000) in paragraph at lines 2118--2120 []\T1/ptm/m/n/10 a date-time ob-ject, or some-thing which can be co-erced by [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] Underfull \hbox (badness 10000) in paragraph at lines 3648--3650 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [55] [56] [57] Overfull \hbox (6.42029pt too wide) in paragraph at lines 3889--3889 [] \T1/zi4/m/n/10 c.factor <- function(..., recursive=TRUE) unlist(list(...) , recursive=recursive) [58] [59] [60] [61] [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] Underfull \hbox (badness 2521) in paragraph at lines 4873--4875 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] Overfull \hbox (5.27168pt too wide) in paragraph at lines 6026--6026 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [89] [90] Underfull \hbox (badness 2096) in paragraph at lines 6214--6227 []\T1/ptm/m/n/10 New restarts for \T1/zi4/m/n/10 withRestarts \T1/ptm/m/n/10 ca n be spec-i-fied in sev-eral ways. The sim-plest is in [91] [92] [93] Overfull \hbox (56.34871pt too wide) in paragraph at lines 6423--6425 []\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa ult", "internal", "wininet", "libcurl")\T1/ptm/m/n/10 : [94] [95] Underfull \hbox (badness 10000) in paragraph at lines 6565--6568 []\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo st gen-eral form (from RFC1738) is [96] [97] Underfull \hbox (badness 1442) in paragraph at lines 6747--6753 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \ T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re- move a Underfull \hbox (badness 1248) in paragraph at lines 6747--6753 \T1/ptm/m/n/10 Byte Or-der Mark if present (which it of-ten is for files and we b-pages gen-er-ated by Mi- Underfull \hbox (badness 2080) in paragraph at lines 6747--6753 \T1/ptm/m/n/10 crosoft ap-pli-ca-tions). If a BOM is re-quired (it is not rec-o m-mended) when writ-ing it [98] Underfull \hbox (badness 3568) in paragraph at lines 6809--6816 \T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as [99] [100] Underfull \vbox (badness 10000) has occurred while \output is active [101] [102] [103] Underfull \hbox (badness 1077) in paragraph at lines 7126--7132 []\T1/ptm/m/n/10 A length-one log-i-cal vec-tor that is not \T1/zi4/m/n/10 NA\T 1/ptm/m/n/10 . Con-di-tions of length greater Underfull \hbox (badness 1231) in paragraph at lines 7126--7132 \T1/ptm/m/n/10 than one are cur-rently ac-cepted with a warn-ing, but only the first el-e- [104] [105] [106] [107] [108] Underfull \hbox (badness 2096) in paragraph at lines 7467--7471 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [109] [110] Underfull \hbox (badness 3000) in paragraph at lines 7560--7562 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0, \T1/zi4/m/n/10 getOption("OutDec") \T1/ptm/m/n/10 is con-sulted when la-bels are con-structed for Underfull \hbox (badness 2351) in paragraph at lines 7585--7588 [][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T 1/ptm/m/n/10 , [111] [112] [113] [114] Underfull \hbox (badness 10000) in paragraph at lines 7840--7850 []\T1/zi4/m/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments to a data frame by call-ing [115] Underfull \hbox (badness 4479) in paragraph at lines 7911--7921 [][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[] [][] \T1/ptm/m/n/10 (for the col-umn names), [116] [117] [118] [119] [120] [121] [122] [123] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] Underfull \hbox (badness 1394) in paragraph at lines 9667--9672 []\T1/ptm/m/n/10 Subtraction of date-time ob-jects gives an ob-ject of this cla ss, by call-ing \T1/zi4/m/n/10 difftime \T1/ptm/m/n/10 with [140] [141] [142] [143] [144] Underfull \hbox (badness 1194) in paragraph at lines 10012--10017 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 dontCheck \T1/ptm/m/n/10 func-tion is the s ame as [][]\T1/zi4/m/n/10 identity[][][]\T1/ptm/m/n/10 , but is in-ter-preted b y \T1/zi4/m/n/10 R CMD check Underfull \hbox (badness 1231) in paragraph at lines 10012--10017 \T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of \T1/z i4/m/n/10 x\T1/ptm/m/n/10 . Cur-rently this is only used by [145] [146] [147] Underfull \hbox (badness 1735) in paragraph at lines 10217--10221 \T1/zi4/m/n/10 754-[]2008$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Double _ precision$[][]\T1/ptm/m/n/10 , [][]$\T1/ zi4/m/n/10 https : / / en . wikipedia . [148] [149] [150] [151] [152] [153] Underfull \hbox (badness 2150) in paragraph at lines 10640--10643 []\T1/ptm/m/n/10 logical in-di-cat-ing if du-pli-ca-tion should be con-sid-ered from the re-verse [154] Underfull \hbox (badness 6396) in paragraph at lines 10654--10662 []\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len t method def-i-ni-tions for Underfull \hbox (badness 2735) in paragraph at lines 10683--10690 []\T1/ptm/m/n/10 Except for fac-tors, log-i-cal and raw vec-tors the de-fault \ T1/zi4/m/n/10 nmax = NA \T1/ptm/m/n/10 is equiv-a-lent to [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] Underfull \hbox (badness 4569) in paragraph at lines 11763--11767 []\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been passed as an ar-gu-ment Underfull \hbox (badness 2401) in paragraph at lines 11763--11767 \T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller' s en-vi-ron-ment, i.e., one needs [169] [170] [171] [172] [173] [174] [175] [176] Underfull \hbox (badness 2698) in paragraph at lines 12340--12349 []\T1/ptm/m/n/10 Both \T1/zi4/m/n/10 $ \T1/ptm/m/n/10 and \T1/zi4/m/n/10 [[ \T1 /ptm/m/n/10 can be ap-plied to en-vi-ron-ments. Only char-ac-ter in-dices are a l-lowed Underfull \hbox (badness 4341) in paragraph at lines 12340--12349 \T1/ptm/m/n/10 and no par-tial match-ing is done. The se-man-tics of these op-e r-a-tions are those of [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] Underfull \hbox (badness 6236) in paragraph at lines 12999--13002 []\T1/ptm/m/n/10 For \T1/zi4/m/n/10 iconv \T1/ptm/m/n/10 this will give the im- ple-men-ta-tion as well as the ver-sion, for ex-am-ple [187] [188] [189] [190] [191] [192] Underfull \hbox (badness 2253) in paragraph at lines 13421--13423 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [193] Underfull \hbox (badness 1565) in paragraph at lines 13492--13496 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/ 10 , and [194] Underfull \hbox (badness 10000) in paragraph at lines 13536--13538 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m /n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with [195] [196] Underfull \hbox (badness 1466) in paragraph at lines 13676--13679 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/ zi4/m/n/10 file.copy \T1/ptm/m/n/10 and [197] Underfull \hbox (badness 10000) in paragraph at lines 13795--13799 [][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [ ][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 13806--13809 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [198] [199] [200] [201] Underfull \hbox (badness 3965) in paragraph at lines 14088--14092 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] Underfull \hbox (badness 4429) in paragraph at lines 14850--14853 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] \T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for [214] Underfull \hbox (badness 10000) in paragraph at lines 14950--14952 []\T1/ptm/m/n/10 If you set \T1/zi4/m/n/10 format \T1/ptm/m/n/10 it over-rides the set-ting of \T1/zi4/m/n/10 mode\T1/ptm/m/n/10 , so Underfull \hbox (badness 10000) in paragraph at lines 14956--14960 []\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b ers on the dec-i-mal point, so [215] Underfull \hbox (badness 10000) in paragraph at lines 14995--14999 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt m/m/n/10 3.2.0: for use Underfull \hbox (badness 4156) in paragraph at lines 14995--14999 \T1/ptm/m/n/10 within [][]\T1/zi4/m/n/10 print[][][] \T1/ptm/m/n/10 meth-ods in pack-ages which might be used with ear-lier ver-sions: use [216] Underfull \vbox (badness 10000) has occurred while \output is active [217] [218] [219] [220] [221] [222] [223] [224] Underfull \hbox (badness 2452) in paragraph at lines 15587--15591 []\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 15587--15591 \T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_ WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and [225] [226] Underfull \hbox (badness 1092) in paragraph at lines 15760--15765 [][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t he DLL has been loaded us-ing [227] [228] [229] [230] Underfull \hbox (badness 6741) in paragraph at lines 16011--16015 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \ T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10 , [231] [232] [233] [234] Underfull \hbox (badness 1867) in paragraph at lines 16317--16324 []\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][] [] (or char-ac-ter string for [235] [236] [237] [238] Underfull \vbox (badness 10000) has occurred while \output is active [239] [240] Underfull \hbox (badness 3679) in paragraph at lines 16727--16729 []\T1/ptm/m/n/10 The TRE li-brary of Ville Lau-rikari ([][]$\T1/zi4/m/n/10 http : / / laurikari . net / tre/$[][]\T1/ptm/m/n/10 ) is used ex-cept for [241] [242] [243] [244] [245] [246] [247] [248] Underfull \hbox (badness 1478) in paragraph at lines 17292--17295 []\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [249] [250] [251] Underfull \hbox (badness 10000) in paragraph at lines 17545--17547 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 http : / / www . unicode . org / reports / tr35 / [252] [253] [254] [255] [256] [257] [258] [259] [260] Underfull \hbox (badness 1442) in paragraph at lines 18136--18138 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see [261] Underfull \hbox (badness 2452) in paragraph at lines 18228--18244 [][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 , [262] [263] [264] [265] [266] [267] Underfull \hbox (badness 1248) in paragraph at lines 18642--18645 []\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n /10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/ m/n/10 , [268] [269] [270] [271] Underfull \hbox (badness 4739) in paragraph at lines 18900--18902 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [272] [273] [274] [275] [276] [277] [278] [279] [280] [281] [282] [283] [284] [285] [286] [287] Underfull \hbox (badness 2469) in paragraph at lines 19917--19922 []\T1/ptm/m/n/10 In late 2017 a \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 in-stal-l a-tion was seen di-vided into two li-braries, \T1/zi4/m/n/10 libcurl \T1/ptm/m/ n/10 and [288] Underfull \hbox (badness 10000) in paragraph at lines 19931--19938 [][][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / sslcerts . html$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / Underfull \hbox (badness 10000) in paragraph at lines 20005--20009 []\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory Underfull \hbox (badness 2460) in paragraph at lines 20005--20009 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/ 10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T 1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10 ' [289] [290] Underfull \hbox (badness 1509) in paragraph at lines 20140--20147 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 library \T1/ptm/m/n/10 is called with no \T1 /zi4/m/n/10 package \T1/ptm/m/n/10 or \T1/zi4/m/n/10 help \T1/ptm/m/n/10 ar-gu- ment, it lists all avail-able pack-ages Underfull \hbox (badness 1552) in paragraph at lines 20140--20147 \T1/ptm/m/n/10 Use \T1/zi4/m/n/10 .packages(all = TRUE) \T1/ptm/m/n/10 to ob-ta in just the names of all avail-able pack-ages, and Underfull \hbox (badness 1014) in paragraph at lines 20156--20161 []\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1 0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if [291] [292] [293] [294] [295] [296] [297] [298] [299] [300] [301] Underfull \hbox (badness 1264) in paragraph at lines 20907--20912 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [302] Underfull \hbox (badness 4441) in paragraph at lines 20936--20939 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory \T1/zi4/m/n/10 "LC_ALL" \T1/ptm/ m/n/10 sets only cat-e-gories \T1/zi4/m/n/10 "LC_COLLATE"\T1/ptm/m/n/10 , \T1/z i4/m/n/10 "LC_CTYPE"\T1/ptm/m/n/10 , [303] [304] [305] [306] [307] [308] [309] [310] [311] [312] Underfull \hbox (badness 10000) in paragraph at lines 21670--21672 []\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n /10 has the prop-erty that [313] [314] [315] [316] [317] [318] [319] [320] [321] [322] [323] [324] [325] [326] [327] [328] Underfull \hbox (badness 1077) in paragraph at lines 22705--22711 \T1/zi4/m/n/10 / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm/m/n/10 , [][ ]$\T1/zi4/m/n/10 http : / / tukaani . org / xz/$[][] \T1/ptm/m/n/10 and [][]$\T 1/zi4/m/n/10 https : / / en . wikipedia . [329] [330] Underfull \hbox (badness 1484) in paragraph at lines 22868--22876 \T1/ptm/m/n/10 to al-low more (up to 3Gb). See [][]$\T1/zi4/m/n/10 https : / / www . microsoft . com / whdc / system / platform / [331] [332] [333] [334] Underfull \hbox (badness 2790) in paragraph at lines 23153--23156 []\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s ages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 23153--23156 \T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m es-sages, so can be sup-pressed by [335] [336] [337] [338] Underfull \hbox (badness 1194) in paragraph at lines 23435--23438 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 . It calls [339] [340] [341] Underfull \hbox (badness 10000) in paragraph at lines 23641--23647 []\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 , \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond- ing Underfull \hbox (badness 7379) in paragraph at lines 23641--23647 \T1/ptm/m/n/10 list, i.e., \T1/zi4/m/n/10 names(as.list(env, all.names = TRUE)) \T1/ptm/m/n/10 which are also given by Underfull \hbox (badness 10000) in paragraph at lines 23651--23654 []\T1/ptm/m/n/10 It is pos-si-ble to up-date just part of the names at-tribute via the gen-eral rules: Underfull \hbox (badness 10000) in paragraph at lines 23651--23654 \T1/ptm/m/n/10 see the ex-am-ples. This works be-cause the ex-pres-sion there i s eval-u-ated as [342] [343] [344] [345] [346] [347] Underfull \hbox (badness 10000) in paragraph at lines 24022--24025 []\T1/ptm/m/n/10 optional [][]\T1/zi4/m/n/10 logical[][][] \T1/ptm/m/n/10 even- tu-ally to be passed to \T1/zi4/m/n/10 print()\T1/ptm/m/n/10 , used by [348] [349] [350] [351] [352] [353] [354] [355] Underfull \hbox (badness 10000) in paragraph at lines 24614--24616 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m ore ef-fi-cient than [356] [357] [358] [359] Underfull \hbox (badness 1199) in paragraph at lines 24858--24864 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 is.numeric \T1/ptm/m/n/ 10 re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode [][][] \T1/zi4/m/n/10 "numeric" Underfull \hbox (badness 2027) in paragraph at lines 24858--24864 \T1/ptm/m/n/10 ([][]type[][][] \T1/zi4/m/n/10 "double" \T1/ptm/m/n/10 or type \ T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 ) and not a fac-tor, and \T1/zi4/m/n/10 F ALSE \T1/ptm/m/n/10 oth-er-wise. That is, [360] [361] [362] [363] [364] [365] [366] [367] Underfull \hbox (badness 1038) in paragraph at lines 25450--25458 []\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/ 10 R \T1/ptm/m/n/10 starts up. Ini-tially Underfull \hbox (badness 1881) in paragraph at lines 25459--25462 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 25478--25480 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [368] Underfull \hbox (badness 10000) in paragraph at lines 25587--25597 []\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/zi4/m /n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to Underfull \hbox (badness 2142) in paragraph at lines 25598--25604 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able [369] Underfull \hbox (badness 1968) in paragraph at lines 25634--25639 []\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 25644--25646 []\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v alue [370] [371] Underfull \hbox (badness 10000) in paragraph at lines 25907--25913 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/ n/10 setRepositories[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 25907--25913 \T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "https://bioconductor.org"\T1/ ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 25907--25913 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de"\ T1/ptm/m/n/10 '. Can be set by [372] Underfull \hbox (badness 10000) in paragraph at lines 25920--25923 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][ ][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10 and Underfull \hbox (badness 2689) in paragraph at lines 25944--25946 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see Underfull \hbox (badness 10000) in paragraph at lines 25976--25981 []\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/ 10 (and in-di-rectly Underfull \hbox (badness 1629) in paragraph at lines 25982--25993 \T1/ptm/m/n/10 si-ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi 4/m/n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use an d Underfull \hbox (badness 7203) in paragraph at lines 25994--25997 []\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/ n/10 and Underfull \hbox (badness 3713) in paragraph at lines 26004--26016 \T1/ptm/m/n/10 Pos-si-ble val-ues are \T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (t he de-fault ex-cept un-der a CRAN ma-cOS build), Underfull \hbox (badness 7944) in paragraph at lines 26004--26016 \T1/zi4/m/n/10 "mac.binary.el-capitan" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "both" \T1/ptm/m/n/10 (the de-fault for CRAN ma-cOS builds). Underfull \hbox (badness 2351) in paragraph at lines 26004--26016 \T1/ptm/m/n/10 Win-dows uses \T1/zi4/m/n/10 "win.binary"\T1/ptm/m/n/10 . (\T1/z i4/m/n/10 "mac.binary.mavericks"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "mac.binary.leo pard"\T1/ptm/m/n/10 , [373] Underfull \hbox (badness 10000) in paragraph at lines 26018--26025 []\T1/ptm/m/n/10 URLs of the repos-i-to-ries for use by [][]\T1/zi4/m/n/10 upda te.packages[][][]\T1/ptm/m/n/10 . De-faults to Underfull \hbox (badness 10000) in paragraph at lines 26018--26025 \T1/zi4/m/n/10 c(CRAN="@CRAN@")\T1/ptm/m/n/10 , a value that causes some util-i -ties to prompt for a Underfull \hbox (badness 6380) in paragraph at lines 26018--26025 \T1/ptm/m/n/10 CRAN mir-ror. To avoid this do set the CRAN mir-ror, by some-thi ng like Underfull \hbox (badness 1874) in paragraph at lines 26018--26025 \T1/zi4/m/n/10 local({r <- getOption("repos"); r["CRAN"] <- "http://my.local.cr an"; [374] [375] [376] [377] Underfull \hbox (badness 10000) in paragraph at lines 26362--26366 []\T1/ptm/m/n/10 The outer prod-uct of the ar-rays \T1/zi4/m/n/10 X \T1/ptm/m/n /10 and \T1/zi4/m/n/10 Y \T1/ptm/m/n/10 is the ar-ray \T1/zi4/m/n/10 A \T1/ptm/ m/n/10 with di-men-sion Underfull \hbox (badness 10000) in paragraph at lines 26362--26366 \T1/zi4/m/n/10 c(dim(X), dim(Y)) \T1/ptm/m/n/10 where el-e-ment \T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] [378] [379] [380] [381] [382] Underfull \hbox (badness 1735) in paragraph at lines 26681--26685 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 paste() \T1/ptm/m/n/10 co-erces [][]\ T1/zi4/m/n/10 NA_character_[][][]\T1/ptm/m/n/10 , the char-ac-ter miss-ing valu e, to \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 which [383] [384] [385] [386] [387] [388] [389] [390] [391] Underfull \hbox (badness 2726) in paragraph at lines 27256--27259 []\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di -cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put, see [392] [393] [394] [395] [396] [397] [398] [399] [400] [401] [402] [403] Underfull \hbox (badness 1052) in paragraph at lines 28085--28090 []\T1/zi4/m/n/10 qr.X \T1/ptm/m/n/10 re-turns $\OML/cmm/b/it/10 X$\T1/ptm/m/n/1 0 , the orig-i-nal ma-trix from which the qr ob-ject was con-structed, pro-vide d [404] [405] [406] [407] [408] [409] [410] [411] [412] [413] [414] [415] Underfull \hbox (badness 1533) in paragraph at lines 28917--28920 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [416] [417] Underfull \hbox (badness 1163) in paragraph at lines 29080--29091 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\ T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [418] [419] [420] [421] [422] [423] [424] [425] [426] [427] [428] [429] [430] [431] [432] [433] [434] [435] [436] [437] [438] [439] Underfull \hbox (badness 10000) in paragraph at lines 30613--30617 []\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n /10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 30613--30617 \T1/zi4/m/n/10 "(?[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t he matches are also re-turned by name. [440] Underfull \hbox (badness 6188) in paragraph at lines 30635--30637 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p ubs . opengroup . org / onlinepubs / 9699919799 / [441] [442] [443] [444] [445] [446] [447] [448] Underfull \hbox (badness 1655) in paragraph at lines 31178--31180 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm /m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for [449] [450] [451] [452] [453] [454] [455] [456] [457] [458] Underfull \hbox (badness 10000) in paragraph at lines 31886--31890 []\T1/zi4/m/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my c ur-rent workspace', i.e., [459] [460] [461] [462] Underfull \hbox (badness 2302) in paragraph at lines 32137--32144 []\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d e-fined as $[]$, Underfull \hbox (badness 2837) in paragraph at lines 32137--32144 \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non -missing Underfull \hbox (badness 3333) in paragraph at lines 32137--32144 \T1/ptm/m/n/10 val-ues. In the case \T1/zi4/m/n/10 center = TRUE\T1/ptm/m/n/10 , this is the same as the stan-dard de-vi-a-tion, Underfull \hbox (badness 2181) in paragraph at lines 32137--32144 \T1/ptm/m/n/10 but in gen-eral it is not. (To scale by the stan-dard de-vi-a-ti ons with-out cen-ter-ing, use [463] [464] Underfull \hbox (badness 2261) in paragraph at lines 32293--32298 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i t ap-plies to all fields; oth-er-wise, if Underfull \hbox (badness 10000) in paragraph at lines 32320--32326 []\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac- ters [465] Underfull \hbox (badness 10000) in paragraph at lines 32396--32401 []\T1/ptm/m/n/10 Note that since \T1/zi4/m/n/10 sep \T1/ptm/m/n/10 is a sep-a-r a-tor and not a ter-mi-na-tor, read-ing a file by [466] [467] [468] [469] [470] [471] [472] [473] [474] [475] [476] [477] [478] [479] [480] [481] [482] [483] [484] [485] [486] [487] [488] [489] [490] [491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501] Underfull \vbox (badness 10000) has occurred while \output is active [502] [503] [504] [505] [506] [507] [508] Underfull \hbox (badness 1072) in paragraph at lines 35438--35442 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 35443--35447 []\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/ 10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 - -no-init-file\T1/ptm/m/n/10 ', [509] Underfull \hbox (badness 10000) in paragraph at lines 35471--35477 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 35471--35477 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 35471--35477 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in Underfull \hbox (badness 3343) in paragraph at lines 35483--35490 \T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 35483--35490 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 35483--35490 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [510] [511] [512] [513] [514] Underfull \hbox (badness 10000) in paragraph at lines 35824--35830 []\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form at \T1/ptm/m/n/10 meth-ods is Underfull \hbox (badness 1264) in paragraph at lines 35824--35830 \T1/zi4/m/n/10 "%Y-%m-%d %H:%M:%S" \T1/ptm/m/n/10 if any el-e-ment has a time c om-po-nent which is [515] [516] [517] [518] [519] [520] [521] [522] [523] [524] [525] [526] [527] [528] [529] [530] [531] [532] [533] [534] [535] [536] [537] [538] Underfull \vbox (badness 10000) has occurred while \output is active [539] [540] [541] Underfull \hbox (badness 3333) in paragraph at lines 37674--37679 []\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi s may need to be matched ex-plic-itly: for ex-am-ple [542] [543] [544] [545] [546] [547] [548] [549] [550] [551] Underfull \hbox (badness 1472) in paragraph at lines 38306--38309 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee p their source in-clud-ing com-ments, see [552] [553] [554] [555] [556] [557] [558] [559] [560] [561] [562] [563] [564] Underfull \hbox (badness 10000) in paragraph at lines 39212--39216 []\T1/ptm/m/n/10 On 64-bit plat-forms \T1/zi4/m/n/10 bin \T1/ptm/m/n/10 can hav e $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., [565] [566] [567] [568] Underfull \hbox (badness 10000) in paragraph at lines 39462--39465 [][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [ ][]$https : / / developer . r-[]project . org / [569] Underfull \hbox (badness 10000) in paragraph at lines 39580--39584 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 getTaskCallbackNames [][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer . [570] Underfull \hbox (badness 10000) in paragraph at lines 39642--39646 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[ ][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer . [571] [572] [573] [574] [575] [576] [577] Underfull \vbox (badness 1681) has occurred while \output is active [578] [579] Underfull \hbox (badness 4013) in paragraph at lines 40255--40257 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / www . twinsun . com / tz / tz-[]link . [580] [581] [582] [583] [584] Underfull \vbox (badness 10000) has occurred while \output is active [585] [586] [587] [588] [589] [590] [591] Underfull \hbox (badness 3460) in paragraph at lines 41136--41139 []\T1/ptm/m/n/10 a [][]con-nec-tion[][][], or a char-ac-ter string nam-ing the file to print to (via Underfull \hbox (badness 1990) in paragraph at lines 41143--41151 []\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e r-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 41143--41151 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less [592] [593] [594] [595] Underfull \hbox (badness 10000) in paragraph at lines 41420--41423 []\T1/ptm/m/n/10 On most plat-forms `file' in-cludes sym-bolic links, fi-fos an d sock-ets. [596] [597] [598] Underfull \hbox (badness 1917) in paragraph at lines 41648--41655 []\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/ ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute [599] [600] [601] [602] [603] [604] [605] [606] [607] [608] [609] Underfull \hbox (badness 3668) in paragraph at lines 42369--42371 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di- ately, even if [610] [611] Underfull \hbox (badness 2401) in paragraph at lines 42497--42501 []\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [612] [613] Underfull \hbox (badness 2111) in paragraph at lines 42686--42691 \T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n ot empty, these are used as col-umn names. [614] Underfull \hbox (badness 7362) in paragraph at lines 42702--42707 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m /n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is [615] [616] [617] [618] [619] [620] [621] [622] Underfull \hbox (badness 5417) in paragraph at lines 43281--43285 []\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [623] Underfull \hbox (badness 10000) in paragraph at lines 43342--43346 []\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard ' reg-exps, in-clud-ing el-e-ments named [624]) (./compiler-pkg.tex Chapter 2. [625] [626] [627] [628]) (./datasets-pkg.tex Chapter 3. [629] [630] [631] [632] [633] [634] Underfull \vbox (badness 1472) has occurred while \output is active [635] [636] [637] [638] [639] [640] [641] [642] [643] Underfull \hbox (badness 1097) in paragraph at lines 1031--1035 []\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th e iden-ti-fi-ca-tion of crim-i-nals. [644] [645] [646] [647] [648] [649] [650] [651] [652] [653] [654] [655] [656] [657] [658] [659] [660] [661] [662] [663] [664] [665] Overfull \vbox (4.26088pt too high) has occurred while \output is active [666] [667] [668] [669] [670] [671] Overfull \vbox (13.87083pt too high) has occurred while \output is active [672] Underfull \vbox (badness 2376) has occurred while \output is active [673] [674] Overfull \vbox (12.25539pt too high) has occurred while \output is active [675] [676] Overfull \vbox (17.12102pt too high) has occurred while \output is active [677] [678] [679] [680] [681] [682] [683] [684] [685] [686] [687] Overfull \vbox (10.49593pt too high) has occurred while \output is active [688] Overfull \vbox (15.49593pt too high) has occurred while \output is active [689] [690] [691] [692] [693] [694] [695] [696] [697] [698] [699] [700] [701] [702] [703]) (./grDevices-pkg.tex [704] Chapter 4. [705] [706] [707] [708] [709] [710] [711] [712] [713] [714] [715] [716] [717] [718] [719] [720] Underfull \hbox (badness 5175) in paragraph at lines 1082--1084 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [721] [722] [723] Underfull \hbox (badness 1852) in paragraph at lines 1279--1282 []\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col- ors that will be used in plot-ting, call-ing [724] [725] [726] Underfull \hbox (badness 1490) in paragraph at lines 1485--1490 \T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\ T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/ 10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and [727] [728] Underfull \hbox (badness 10000) in paragraph at lines 1608--1612 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , the func-tion also re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 when [729] [730] [731] [732] Underfull \hbox (badness 1325) in paragraph at lines 1891--1901 \T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/ 10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1 /ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 , [733] Underfull \hbox (badness 10000) in paragraph at lines 1996--1998 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [734] [735] [736] Underfull \hbox (badness 6758) in paragraph at lines 2157--2160 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [737] [738] [739] [740] [741] [742] [743] [744] [745] Underfull \hbox (badness 10000) in paragraph at lines 2750--2751 Underfull \vbox (badness 10000) has occurred while \output is active [746] [747] [748] [749] [750] [751] [752] Underfull \hbox (badness 10000) in paragraph at lines 3248--3253 []\T1/zi4/m/n/10 nclass.FD \T1/ptm/m/n/10 uses the Freedman-Diaconis choice bas ed on the inter-quartile range [753] [754] [755] [756] Underfull \hbox (badness 3302) in paragraph at lines 3514--3517 []\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv e a C in-te-ger for-mat such as Underfull \hbox (badness 2662) in paragraph at lines 3528--3530 []\T1/ptm/m/n/10 title string to em-bed as the `\T1/zi4/m/n/10 /Title\T1/ptm/m/ n/10 ' field in the file. De-faults to [757] [758] [759] [760] [761] [762] [763] [764] [765] [766] [767] [768] Underfull \hbox (badness 1067) in paragraph at lines 4355--4362 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [769] [770] [771] [772] Underfull \hbox (badness 1789) in paragraph at lines 4595--4597 []\T1/ptm/m/n/10 title string to em-bed as the \T1/zi4/m/n/10 Title \T1/ptm/m/n /10 com-ment in the file. De-faults to Underfull \hbox (badness 1377) in paragraph at lines 4645--4650 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [773] Underfull \hbox (badness 2671) in paragraph at lines 4672--4680 \T1/ptm/m/n/10 For use in this way you will prob-a-bly want to use [][]\T1/zi4/ m/n/10 setEPS[][][]() \T1/ptm/m/n/10 to set the de-faults as Underfull \hbox (badness 1418) in paragraph at lines 4721--4728 \T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4 /m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/ zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm /m/n/10 , Underfull \hbox (badness 2443) in paragraph at lines 4729--4738 \T1/ptm/m/n/10 PostScript de-vice is us-ing URW fonts, you will ob-tain ac-cess to more char-ac-ters and Underfull \hbox (badness 2653) in paragraph at lines 4729--4738 \T1/ptm/m/n/10 more ap-pro-pri-ate met-rics by us-ing these names. To make thes e eas-ier to re-mem-ber, Underfull \hbox (badness 1755) in paragraph at lines 4739--4741 []\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East Asian lan-guages -- see [774] [775] Underfull \hbox (badness 1377) in paragraph at lines 4850--4855 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \ T1/zi4/m/n/10 "rgb" \T1/ptm/m/n/10 (which is RGB+gray) and Underfull \hbox (badness 7344) in paragraph at lines 4910--4912 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [776] [777] Underfull \hbox (badness 2035) in paragraph at lines 5034--5043 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5034--5043 \T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/ n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 5034--5043 \T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 , [778] [779] Underfull \hbox (badness 10000) in paragraph at lines 5102--5109 []\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4 /m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu / Underfull \hbox (badness 2189) in paragraph at lines 5102--5109 \T1/zi4/m/n/10 chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Lunde's CJK V re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly . [780] [781] Underfull \hbox (badness 1546) in paragraph at lines 5244--5252 []\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T 1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/ n/10 , [782] Underfull \hbox (badness 1648) in paragraph at lines 5321--5325 []\T1/ptm/m/n/10 title for the Quartz win-dow (ap-plies to on-screen out-put on ly), de-fault [783] [784] [785] [786] [787] [788] Underfull \hbox (badness 10000) in paragraph at lines 5772--5775 []\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red /green/blue) into HSV space [789] [790] [791] [792] [793] [794] [795] Underfull \hbox (badness 1189) in paragraph at lines 6169--6171 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [796] Underfull \hbox (badness 10000) in paragraph at lines 6267--6269 []\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK lan-guages and [797] [798] [799] [800] Underfull \hbox (badness 3780) in paragraph at lines 6558--6564 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1 0 "AvantGarde"\T1/ptm/m/n/10 , [801] [802] [803] Underfull \hbox (badness 2680) in paragraph at lines 6759--6761 []\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of [804] [805] [806]) (./graphics-pkg.tex Chapter 5. [807] [808] [809] [810] [811] [812] [813] [814] [815] [816] Underfull \hbox (badness 10000) in paragraph at lines 687--694 []\T1/zi4/m/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/p tm/m/n/10 in-ter-face to the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/pt m/m/n/10 in [817] [818] [819] [820] Underfull \vbox (badness 10000) has occurred while \output is active [821] [822] [823] [824] [825] Underfull \hbox (badness 4634) in paragraph at lines 1262--1265 [][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n /10 , [826] [827] [828] [829] [830] [831] [832] [833] [834] [835] [836] [837] [838] [839] [840] [841] Underfull \hbox (badness 1009) in paragraph at lines 2296--2303 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [842] [843] [844] [845] [846] [847] [848] [849] [850] [851] [852] [853] [854] [855] [856] [857] [858] [859] [860] [861] [862] Underfull \vbox (badness 10000) has occurred while \output is active [863] [864] [865] [866] Underfull \hbox (badness 1867) in paragraph at lines 3950--3954 []\T1/ptm/m/n/10 vector of back-ground (fill) col-ors for the open plot sym-bol s given by [867] [868] [869] [870] [871] [872] [873] Underfull \hbox (badness 1924) in paragraph at lines 4400--4405 []\T1/ptm/m/n/10 a func-tion which in-di-cates what should hap-pen when the dat a con-tain [874] Underfull \hbox (badness 2529) in paragraph at lines 4431--4434 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used: see [875] [876] [877] [878] Underfull \hbox (badness 10000) in paragraph at lines 4781--4787 []\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n /10 (width, height) \T1/ptm/m/n/10 in user co-or-di-nate units. Underfull \hbox (badness 5908) in paragraph at lines 4781--4787 \T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin" ) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that [879] [880] Underfull \hbox (badness 10000) in paragraph at lines 4912--4915 [881 ] Underfull \hbox (badness 10000) in paragraph at lines 4973--4975 [882 ] [883] Underfull \hbox (badness 10000) in paragraph at lines 5163--5165 []\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2 :6\T1/ptm/m/n/10 ) cor-re-spond to [884] [885] [886] [887] [888] [889] [890] [891] [892] [893] [894] [895] [896] [897] [898] [899] [900] [901] [902] [903] [904] [905] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6634--6635 [][] [906 ] [907] Underfull \vbox (badness 10000) has occurred while \output is active [908] [909] [910] [911] [912] [913] [914] [915] [916] Underfull \hbox (badness 1048) in paragraph at lines 7343--7348 \T1/ptm/m/n/10 avoided (see the Warn-ings sec-tion be-low). Split-screen mode i s ex-ited by the com-mand [917] [918] Underfull \hbox (badness 1102) in paragraph at lines 7459--7462 []\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d rawn be-tween the point \T1/zi4/m/n/10 (x0[i], y0[i]) \T1/ptm/m/n/10 and the po int [919] [920] [921] [922] [923] [924] [925] [926] [927] [928] [929] [930] [931] Underfull \hbox (badness 1043) in paragraph at lines 8300--8304 []\T1/ptm/m/n/10 For \T1/zi4/m/n/10 number[i] == 1\T1/ptm/m/n/10 , a (slightly en-larged) usual plot-ting sym-bol (\T1/zi4/m/n/10 pch\T1/ptm/m/n/10 ) is drawn . For [932] [933] [934] [935] [936] [937] Underfull \hbox (badness 10000) in paragraph at lines 8707--8709 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color Underfull \hbox (badness 10000) in paragraph at lines 8709--8711 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color [938]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.unit s}) has been already used, duplicate ignored \relax l.8789 \HeaderA{units}{Graphical Units}{units} [939] [940] [941] [942]) (./grid-pkg.tex Chapter 6. [943] [944] [945] [946] [947] [948] Underfull \hbox (badness 2680) in paragraph at lines 392--395 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1 /zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio n of [949] [950] [951] [952] [953] [954] [955] [956] [957] Underfull \hbox (badness 4279) in paragraph at lines 972--981 [][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m /n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 unit[][][]\T1/ptm/m/n/10 , [958] [959] [960] [961] [962] [963] [964] [965] [966] [967] [968] [969] [970] [971] [972] [973] [974] [975] [976] [977] [978] [979] [980] [981] [982] [983] [984] [985] [986] [987] [988] [989] [990] [991] [992] [993] [994] [995] [996] [997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009] [1010] Underfull \hbox (badness 1067) in paragraph at lines 4355--4358 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1011] [1012] [1013] [1014] Underfull \hbox (badness 7256) in paragraph at lines 4600--4602 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1015] [1016] [1017] [1018] [1019] [1020] [1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033] Underfull \hbox (badness 10000) in paragraph at lines 5877--5883 \T1/ptm/m/n/10 and to spec-ify the min-i-mum or max-i-mum of a list of unit ob- jects (e.g., [1034] [1035] [1036] [1037] [1038] [1039] [1040] [1041] Underfull \hbox (badness 7649) in paragraph at lines 6356--6359 []\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by do-ing some-thing like [1042] [1043] [1044] [1045]) (./methods-pkg.tex [1046] Chapter 7. [1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] Underfull \vbox (badness 10000) has occurred while \output is active [1055] Underfull \vbox (badness 10000) has occurred while \output is active [1056] [1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064] Underfull \hbox (badness 2237) in paragraph at lines 1385--1387 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \ T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package "\T1/ptm/m/n/10 , also of class [1065] [1066] [1067] [1068] [1069] [1070] [1071] [1072] Underfull \hbox (badness 1077) in paragraph at lines 1932--1939 []\T1/ptm/m/n/10 Two vir-tual classes are sup-plied to test for ref-er-ence ob- jects: \T1/zi4/m/n/10 is(x, "refClass") \T1/ptm/m/n/10 tests Underfull \hbox (badness 10000) in paragraph at lines 1981--1986 []\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c an be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1981--1986 \T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1 0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the [1073] [1074] [1075] Underfull \hbox (badness 1242) in paragraph at lines 2214--2219 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use \T1/zi4/m/n/10 where = [1076] [1077] [1078] [1079] [1080] Underfull \hbox (badness 10000) in paragraph at lines 2574--2577 []\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o b-jects of class [1081] [1082] Underfull \hbox (badness 1132) in paragraph at lines 2714--2718 []\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1 0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re -turned re-sult is in Underfull \hbox (badness 1033) in paragraph at lines 2746--2751 \T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store s the [1083] [1084] [1085] [1086] [1087] [1088] [1089] Underfull \hbox (badness 1102) in paragraph at lines 3303--3305 []\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na me of the pack-age (with-out the ex-tra-ne-ous [1090] [1091] [1092] [1093] [1094] Underfull \hbox (badness 10000) in paragraph at lines 3634--3639 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these classes takes spe-cial ar-gu-ments Underfull \hbox (badness 10000) in paragraph at lines 3642--3651 []\T1/ptm/m/n/10 The [1095] [1096] Overfull \hbox (123.02902pt too wide) in paragraph at lines 3762--3763 [] \T1/zi4/m/n/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longitude = "numeric", altitude = "numeric")) Underfull \hbox (badness 10000) in paragraph at lines 3762--3763 [1097] Overfull \hbox (16.41006pt too wide) in paragraph at lines 3846--3847 []\T1/zi4/m/n/10 Currency <- setClass("Currency", slots = c(unit = "character") , contains = "numeric") [1098] [1099] [1100] [1101] [1102] [1103] [1104] [1105] Underfull \hbox (badness 1436) in paragraph at lines 4443--4446 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "SealedMethodDefinition" \T1/ptm/m/n/ 10 is cre-ated by a call to [][]\T1/zi4/m/n/10 setMethod[][][] \T1/ptm/m/n/10 w ith ar-gu-ment Underfull \hbox (badness 1769) in paragraph at lines 4472--4478 []\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4472--4478 \T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T 1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by [1106] Underfull \hbox (badness 1092) in paragraph at lines 4531--4538 \T1/ptm/m/n/10 names cor-re-spond-ing to some or all of the for-mal ar-gu-ments . In the pre-vi-ous ex-am-ple, Underfull \hbox (badness 1117) in paragraph at lines 4531--4538 \T1/ptm/m/n/10 if se-lect-ing class \T1/zi4/m/n/10 "track" \T1/ptm/m/n/10 for \ T1/zi4/m/n/10 x\T1/ptm/m/n/10 , find-ing that the se-lec-tion was an-other meth -ods list and [1107] [1108] [1109] [1110] [1111] [1112] [1113] [1114] Underfull \vbox (badness 10000) has occurred while \output is active [1115] Underfull \vbox (badness 10000) has occurred while \output is active [1116] [1117] Underfull \hbox (badness 10000) in paragraph at lines 5355--5356 []\T1/zi4/m/n/10 unique.uncased <- function(x, incomparables = FALSE, ...) [1118] Underfull \hbox (badness 4036) in paragraph at lines 5437--5440 []\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10 the method to use in re-sponse to a [1119] Underfull \hbox (badness 3803) in paragraph at lines 5512--5514 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1120] [1121] [1122] Underfull \hbox (badness 1087) in paragraph at lines 5744--5749 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1123] [1124] [1125] [1126] [1127] [1128] [1129] [1130] Underfull \hbox (badness 1675) in paragraph at lines 6451--6457 \T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1131] [1132] [1133] [1134] Underfull \vbox (badness 10000) has occurred while \output is active [1135] [1136] [1137]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.S4}) has been already used, duplicate ignored \relax l.6973 \aliasA{S4}{S3Part}{S4} [1138] [1139] [1140]pdfTeX warning (ext4): desti nation with the same identifier (name{Rfn.Complex}) has been already used, dupl icate ignored \relax l.7229 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate ignored \relax l.7231 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) has been already used, duplicate igno red \relax l.7232 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination wi th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7234 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor ed \relax l.7235 \aliasA{Summary}{S4groupGeneric}{Summary} [1141] Underfull \hbox (badness 2050) in paragraph at lines 7296--7300 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1142] [1143] Underfull \hbox (badness 1286) in paragraph at lines 7484--7486 []\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal ly [1144] [1145] [1146] [1147] [1148] [1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] [1157] [1158] [1159] [1160] [1161] [1162] [1163] [1164] [1165] [1166] [1167] [1168] [1169] [1170] [1171] [1172] [1173] [1174] [1175] [1176] [1177] [1178] [1179] [1180] [1181] [1182] [1183] Underfull \hbox (badness 1852) in paragraph at lines 10564--10568 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1184] [1185] [1186]) (./parallel-pkg.tex Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4 /m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[ ][][]: see [1187] [1188] [1189] [1190] [1191] [1192] [1193] [1194] [1195] [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] [1204] [1205] Underfull \hbox (badness 3386) in paragraph at lines 1339--1342 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R andom.seed \T1/ptm/m/n/10 when the [1206] [1207] [1208]) (./splines-pkg.tex Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1209] [1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218] [1219] [1220] [1221] [1222]) (./stats-pkg.tex Chapter 10. [1223] [1224] [1225] [1226] [1227] [1228] [1229] [1230] [1231] [1232] [1233] [1234] [1235] Underfull \hbox (badness 1412) in paragraph at lines 847--849 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm \T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for [1236] [1237] [1238] [1239] [1240] [1241] [1242] Underfull \hbox (badness 2503) in paragraph at lines 1328--1331 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1243] [1244] Underfull \hbox (badness 10000) in paragraph at lines 1508--1512 []\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov", "lm") \T1/ptm/m/n/ 10 or for mul-ti-ple re-sponses of class [1245] [1246] [1247] [1248] Underfull \hbox (badness 10000) in paragraph at lines 1773--1777 []\T1/ptm/m/n/10 function to be called to han-dle miss-ing val-ues. Cur-rently, via Underfull \hbox (badness 1546) in paragraph at lines 1773--1777 \T1/zi4/m/n/10 na.action = na.pass\T1/ptm/m/n/10 , only Yule-Walker method can han-dle miss-ing [1249] [1250] [1251] [1252] [1253] [1254] Underfull \hbox (badness 3965) in paragraph at lines 2183--2185 []\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val id for [1255] [1256] [1257] [1258] [1259] Underfull \hbox (badness 3965) in paragraph at lines 2534--2536 []\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val id for [1260] [1261] [1262] [1263] [1264] [1265] [1266] [1267] [1268] [1269] [1270] Underfull \hbox (badness 2726) in paragraph at lines 3260--3276 \T1/ptm/m/n/10 We have slightly tweaked the orig-i-nal ``TOMS 708'' al-go-rithm , and en-hanced for [1271] [1272] Underfull \hbox (badness 2503) in paragraph at lines 3390--3393 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] [1281] [1282] [1283] [1284] [1285] [1286] [1287] [1288] [1289] [1290] [1291] Underfull \hbox (badness 3989) in paragraph at lines 4634--4641 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1292] [1293] Underfull \hbox (badness 3612) in paragraph at lines 4754--4756 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 "aov" \T1/ptm/m/n/10 method does not re-por t aliased co-ef-fi-cients (see [][]\T1/zi4/m/n/10 alias[][][]\T1/ptm/m/n/10 ) b y de-fault where [1294] [1295] [1296] [1297] [1298] [1299] [1300] Underfull \hbox (badness 2556) in paragraph at lines 5270--5273 []\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/ ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p tm/m/n/10 . For Underfull \hbox (badness 2932) in paragraph at lines 5287--5289 []\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se- quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is given by [1301] [1302] [1303] [1304] Underfull \hbox (badness 1142) in paragraph at lines 5528--5540 \T1/ptm/m/n/10 For \T1/zi4/m/n/10 cov()\T1/ptm/m/n/10 , a non-Pearson method is un-usual but avail-able for the sake of com-plete-ness. [1305] [1306] Underfull \hbox (badness 2503) in paragraph at lines 5680--5684 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1307] [1308] [1309] [1310] [1311] [1312] [1313] [1314] Underfull \hbox (badness 8132) in paragraph at lines 6184--6189 \T1/ptm/m/n/10 then \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is a den-dro-gram of the sa me graph struc-ture as \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and for each node, [1315] [1316] [1317] [1318] Underfull \hbox (badness 7081) in paragraph at lines 6462--6465 []\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 10000) in paragraph at lines 6466--6468 []\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also [1319] [1320] [1321] [1322] [1323] Underfull \vbox (badness 10000) has occurred while \output is active [1324] [1325] [1326] Underfull \vbox (badness 10000) has occurred while \output is active [1327] [1328] [1329] [1330] [1331] Underfull \hbox (badness 10000) in paragraph at lines 7311--7314 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T 1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the [1332] [1333] [1334] [1335] [1336] [1337] [1338] [1339] [1340] [1341] [1342] [1343] [1344] [1345] [1346] [1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355] Underfull \hbox (badness 2626) in paragraph at lines 8953--8956 []\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1356] [1357] Underfull \hbox (badness 2503) in paragraph at lines 9060--9064 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , Underfull \hbox (badness 2564) in paragraph at lines 9112--9121 []\T1/ptm/m/n/10 For larger than $\OT1/cmr/m/n/10 2 \OMS/cmsy/m/n/10 ^^B \OT1/c mr/m/n/10 2$ \T1/ptm/m/n/10 ta-bles and \T1/zi4/m/n/10 hybrid = TRUE\T1/ptm/m/n /10 , asymp-totic chi-squared prob-a-bil-i- Underfull \hbox (badness 1331) in paragraph at lines 9112--9121 \T1/ptm/m/n/10 ties are only used if the `Cochran con-di-tions' (or mod-i-fied ver-sion thereof) spec-i-fied by [1358] [1359] [1360] [1361] [1362] Overfull \hbox (3.53955pt too wide) in paragraph at lines 9434--9436 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Fligner-Killeen test of homogeneity of variances"\T1/ptm/m/n/10 . [1363] [1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375] Underfull \hbox (badness 4518) in paragraph at lines 10362--10367 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1376] [1377] [1378] [1379] [1380] Underfull \hbox (badness 2142) in paragraph at lines 10710--10713 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ Underfull \hbox (badness 1253) in paragraph at lines 10729--10732 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][ ]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it- er-a-tion. Hence, [1381] Underfull \hbox (badness 1708) in paragraph at lines 10791--10795 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1382] [1383] [1384] [1385] [1386] Underfull \hbox (badness 1694) in paragraph at lines 11189--11192 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1387] Underfull \hbox (badness 1867) in paragraph at lines 11208--11217 \T1/ptm/m/n/10 in the row case. If ei-ther is miss-ing, as by de-fault, then th e or-der-ing of the cor-re- [1388] [1389] [1390] [1391] [1392] Underfull \hbox (badness 10000) in paragraph at lines 11516--11519 []\T1/ptm/m/n/10 If one of $\OML/cmm/m/it/10 m; n; k$\T1/ptm/m/n/10 , ex-ceeds [][]\T1/zi4/m/n/10 .Machine[][][]$integer.max\T1/ptm/m/n/10 , cur-rently the eq uiv-a-lent of [1393] [1394]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.hat}) has been already used, duplicate ignored \relax l.11670 \aliasA{hat}{influence.measures}{hat} [1395] [1396] Underfull \hbox (badness 1484) in paragraph at lines 11801--11803 []\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1397] [1398] [1399] [1400] [1401] [1402] [1403] [1404] [1405] Underfull \hbox (badness 4441) in paragraph at lines 12387--12389 []\T1/ptm/m/n/10 vector of dif-fer-enc-ing co-ef-fi-cients, so an ARMA model is fit-ted to Underfull \hbox (badness 10000) in paragraph at lines 12394--12396 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa ult[][][] \T1/ptm/m/n/10 when [1406] [1407] [1408] [1409] [1410] Underfull \hbox (badness 2894) in paragraph at lines 12730--12734 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1411] [1412] [1413] [1414] [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] Underfull \hbox (badness 4518) in paragraph at lines 13480--13485 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1423] [1424] [1425] [1426] [1427] [1428] [1429] [1430] [1431] Underfull \hbox (badness 4518) in paragraph at lines 14132--14137 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1432] [1433] Underfull \hbox (badness 10000) in paragraph at lines 14270--14274 []\T1/ptm/m/n/10 Only for the (de-fault) case \T1/zi4/m/n/10 (surface = Underfull \hbox (badness 1199) in paragraph at lines 14277--14279 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if \T1/zi4/m/n/10 family \T1/ptm/m/n/10 is [1434] [1435] [1436] [1437] [1438] [1439] [1440] [1441] [1442] [1443] [1444] [1445] [1446] [1447] [1448] [1449] Underfull \hbox (badness 2503) in paragraph at lines 15345--15349 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1450] [1451] [1452] [1453] [1454] [1455] [1456] [1457] Underfull \hbox (badness 1584) in paragraph at lines 15857--15863 []\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response \T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(, "offset") \T1 /ptm/m/n/10 and [1458] [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475] [1476] [1477] [1478] [1479] [1480] [1481] [1482] Underfull \hbox (badness 2359) in paragraph at lines 17507--17509 []\T1/ptm/m/n/10 Douglas M. Bates and Saikat De-bRoy: David M. Gay for the For- tran code used by [1483] Underfull \vbox (badness 10000) has occurred while \output is active [1484] Underfull \vbox (badness 10000) has occurred while \output is active [1485] [1486] [1487] [1488] [1489] [1490] [1491] [1492] [1493] [1494] [1495] [1496] Underfull \hbox (badness 1377) in paragraph at lines 18419--18424 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on [1497] Underfull \hbox (badness 1735) in paragraph at lines 18424--18427 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 1454) in paragraph at lines 18437--18441 \T1/ptm/m/n/10 value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + reltol ) \T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 18445--18449 []\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \ T1/ptm/m/n/10 meth-ods if [1498] [1499] [1500] Overfull \hbox (15.73795pt too wide) in paragraph at lines 18669--18669 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Overfull \hbox (3.75941pt too wide) in paragraph at lines 18672--18672 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1501] [1502] [1503] [1504] [1505] [1506] Underfull \hbox (badness 1337) in paragraph at lines 19094--19097 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1507] [1508] [1509] [1510] [1511] [1512] [1513] [1514] Underfull \hbox (badness 3049) in paragraph at lines 19583--19587 []\T1/ptm/m/n/10 In the Cook's dis-tance vs leverage/(1-leverage) plot, con-tou rs of stan-dard-ized resid-u-als [1515] [1516] [1517] [1518] Underfull \hbox (badness 5563) in paragraph at lines 19838--19840 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , add to al-read y ex-ist-ing plot. Only valid for Underfull \hbox (badness 1194) in paragraph at lines 19841--19844 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1519] [1520] [1521] [1522] [1523] [1524] Underfull \hbox (badness 2503) in paragraph at lines 20216--20219 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1525] Underfull \hbox (badness 10000) in paragraph at lines 20243--20245 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1 /ptm/m/n/10 or [1526] [1527] [1528] [1529] [1530] [1531] [1532] [1533] [1534] [1535] [1536] [1537] [1538] [1539] [1540] [1541] Underfull \hbox (badness 10000) in paragraph at lines 21316--21322 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][ ][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 , [1542] [1543] [1544] [1545] [1546] [1547] [1548] [1549] [1550] [1551] [1552] [1553] [1554] [1555] [1556] [1557] [1558] [1559] [1560] [1561] [1562] Underfull \hbox (badness 1337) in paragraph at lines 22662--22668 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1563] [1564] [1565] [1566] [1567] [1568] [1569] [1570] Overfull \hbox (27.74408pt too wide) in paragraph at lines 23214--23214 [] \T1/zi4/m/n/9 t(vapply(1:9, function(typ) quantile(x, prob=prob, type = ty p, ...), quantile(x, prob, type=1)))[] [1571] [1572] [1573] [1574] Underfull \hbox (badness 10000) in paragraph at lines 23465--23468 []\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] Underfull \hbox (badness 10000) in paragraph at lines 24050--24053 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run med(x, k) \T1/ptm/m/n/10 sim-ply has [1584] Underfull \hbox (badness 3690) in paragraph at lines 24102--24106 [][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's end point rule and is called by de-fault from [1585] [1586] [1587] [1588] [1589] [1590] [1591] Underfull \hbox (badness 2165) in paragraph at lines 24581--24586 []\T1/ptm/m/n/10 Each of the fol-low-ing are \T1/zi4/m/n/10 "selfStart" \T1/ptm /m/n/10 mod-els (with ex-am-ples) [][]\T1/zi4/m/n/10 SSasymp[][][]\T1/ptm/m/n/1 0 , [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [1592] [1593] [1594] [1595] Underfull \hbox (badness 1867) in paragraph at lines 24786--24788 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 24799--24803 \T1/ptm/m/n/10 where \T1/zi4/m/n/10 NN <- [][]nobs[][][](object, use.fallback = use.fallback) \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 24799--24803 \T1/zi4/m/n/10 PP <- sum(!is.na([][]coef[][][](object))) \T1/ptm/m/n/10 -- wher e in older \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions this was Underfull \hbox (badness 1132) in paragraph at lines 24799--24803 \T1/zi4/m/n/10 length(coef(object)) \T1/ptm/m/n/10 which is too large in case o f un-de-ter-mined co-ef-fi-cients, e.g., for [1596] [1597] [1598] [1599] [1600] [1601] [1602] Underfull \hbox (badness 10000) in paragraph at lines 25271--25276 []\T1/ptm/m/n/10 integer or [][]\T1/zi4/m/n/10 function[][][] \T1/ptm/m/n/10 gi v-ing the num-ber of knots to use when [1603] [1604] [1605] [1606] [1607] [1608] [1609] [1610] [1611] [1612] [1613] [1614] [1615] [1616] Underfull \vbox (badness 10000) has occurred while \output is active [1617] Underfull \hbox (badness 3514) in paragraph at lines 26327--26332 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1618] [1619] Underfull \hbox (badness 3514) in paragraph at lines 26423--26428 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1620] Underfull \hbox (badness 3514) in paragraph at lines 26509--26514 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1621] Overfull \hbox (2.23795pt too wide) in paragraph at lines 26561--26561 [] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] [1622] Underfull \hbox (badness 3514) in paragraph at lines 26597--26603 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1623] [1624] [1625] Underfull \hbox (badness 3514) in paragraph at lines 26811--26816 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1626] [1627] Underfull \hbox (badness 3514) in paragraph at lines 26898--26903 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1628] Underfull \hbox (badness 3514) in paragraph at lines 26963--26968 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1629] Underfull \hbox (badness 3514) in paragraph at lines 27057--27062 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1630] [1631] Underfull \hbox (badness 6691) in paragraph at lines 27149--27154 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p tm/m/n/10 . It is the value of the ex-pres-sion [1632] [1633] [1634] [1635] [1636] [1637] [1638] [1639] Underfull \hbox (badness 10000) in paragraph at lines 27679--27682 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex- Underfull \hbox (badness 10000) in paragraph at lines 27679--27682 \T1/ptm/m/n/10 trac-tion, which should be odd. If \T1/zi4/m/n/10 NULL\T1/ptm/m/ n/10 , the de-fault, [1640] [1641] [1642] [1643] [1644] [1645] [1646] [1647] [1648] Underfull \hbox (badness 5431) in paragraph at lines 28285--28287 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1649] [1650] [1651] [1652] Underfull \hbox (badness 5431) in paragraph at lines 28495--28498 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1653] [1654] [1655] [1656] [1657] Underfull \hbox (badness 1337) in paragraph at lines 28809--28813 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1658] Underfull \hbox (badness 10000) in paragraph at lines 28926--28929 []\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/ 10 ; cur-rently ex-cept for \T1/zi4/m/n/10 rt()\T1/ptm/m/n/10 , only for [1659] [1660] [1661] Underfull \hbox (badness 1616) in paragraph at lines 29109--29112 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1662] [1663] [1664] [1665] [1666] [1667] [1668] [1669] [1670] [1671] [1672] [1673] [1674] [1675] [1676] [1677] [1678] [1679] Underfull \hbox (badness 10000) in paragraph at lines 30239--30243 []\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect [1680] [1681] Underfull \vbox (badness 10000) has occurred while \output is active [1682] [1683] [1684] Underfull \hbox (badness 1337) in paragraph at lines 30603--30607 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1685] [1686] [1687] [1688] [1689] [1690] [1691] [1692] Underfull \hbox (badness 1337) in paragraph at lines 31130--31134 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1693] Underfull \hbox (badness 2142) in paragraph at lines 31207--31212 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 x \T1/ptm/m/n/10 (and \T1/zi4/m/n/10 y \T1 /ptm/m/n/10 if ap-pli-ca-ble) are valid, the func-tion now al-ways re-turns, al so in the Underfull \hbox (badness 5161) in paragraph at lines 31229--31231 []\T1/ptm/m/n/10 an es-ti-mate of the lo-ca-tion pa-ram-e-ter. (Only present if ar-gu-ment [1694] [1695] [1696] [1697] [1698] [1699] Underfull \hbox (badness 10000) in paragraph at lines 31612--31617 []\T1/ptm/m/n/10 There is a \T1/zi4/m/n/10 summary \T1/ptm/m/n/10 method for co n-tin-gency ta-ble ob-jects cre-ated by \T1/zi4/m/n/10 table \T1/ptm/m/n/10 or [1700] [1701]) (./stats4-pkg.tex [1702] Chapter 11. [1703] [1704] [1705] [1706] [1707] [1708]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup licate ignored \relax l.407 ...Package \pkg{stats4}}{show.Rdash.methods} [1709] [1710] [1711]) (./tcltk-pkg.tex [1712] Chapter 12. [1713] [1714] [1715] [1716] [1717] [1718] [1719] Underfull \vbox (badness 10000) has occurred while \output is active [1720] Underfull \hbox (badness 1546) in paragraph at lines 664--671 []\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing any Tk or Tcl com-mand by sim-ply run-ning [1721] [1722] [1723] [1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731] Underfull \hbox (badness 3019) in paragraph at lines 1407--1410 [][][]\T1/zi4/m/n/10 select.list[][][] \T1/ptm/m/n/10 (a text ver-sion ex-cept on Win-dows and the ma-cOS GUI), [][]\T1/zi4/m/n/10 menu[][][] \T1/ptm/m/n/10 ( whose [1732]) (./tools-pkg.tex Chapter 13. [1733] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1734] Underfull \hbox (badness 3039) in paragraph at lines 164--167 []\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1735] [1736] Underfull \hbox (badness 1308) in paragraph at lines 285--298 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 285--298 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 formatMastersthesis\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm /m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma tTechreport \T1/ptm/m/n/10 and [1737] Underfull \hbox (badness 3039) in paragraph at lines 389--391 []\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine to use. Over-rides any [1738] [1739] [1740] [1741] [1742] [1743] [1744] Overfull \vbox (7.18602pt too high) has occurred while \output is active [1745] [1746] [1747] [1748] Underfull \hbox (badness 1635) in paragraph at lines 1056--1058 []\T1/ptm/m/n/10 Delete files in the tem-po-rary di-rec-tory? This op-tion is i g-nored when [1749] Underfull \hbox (badness 4441) in paragraph at lines 1134--1144 \T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe n-den-cies (de- [1750] Underfull \hbox (badness 1014) in paragraph at lines 1156--1158 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1162--1164 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous Underfull \hbox (badness 10000) in paragraph at lines 1199--1202 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1199--1202 \T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 , [1751] [1752] [1753] Underfull \hbox (badness 10000) in paragraph at lines 1377--1379 []\T1/ptm/m/n/10 Re-save PDF files (es-pe-cially vi-gnettes) more com-pactly. S up-port func-tion for [1754] [1755] Underfull \hbox (badness 2293) in paragraph at lines 1551--1553 []\T1/zi4/m/n/10 CRAN_memtest_notes() \T1/ptm/m/n/10 is now dep-re-cated, with its func-tion-al-ity in-te-grated into that of [1756] [1757] Underfull \hbox (badness 7981) in paragraph at lines 1689--1694 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1758] Underfull \hbox (badness 1082) in paragraph at lines 1696--1698 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see [1759] [1760] [1761]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ignored \relax l.1893 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [1762] [1763] [1764] [1765] Overfull \hbox (17.27782pt too wide) in paragraph at lines 2195--2195 []\T1/zi4/m/n/9 writeLines(paste0("\\newcommand{\\logo}{\\if{html}{\\figure{Rl ogo.svg}{options: width=100}",[] [1766] [1767] [1768] Underfull \hbox (badness 7981) in paragraph at lines 2364--2370 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1769] [1770] [1771] [1772] [1773] [1774] [1775] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/n' instead on input line 2829. [1776] [1777] [1778] [1779] Underfull \hbox (badness 1424) in paragraph at lines 3111--3113 []\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t or of links, as re-turned by [1780] [1781] [1782] [1783] [1784] [1785] [1786] [1787] [1788] [1789] Underfull \hbox (badness 10000) in paragraph at lines 3811--3813 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [1790] [1791] Underfull \hbox (badness 10000) in paragraph at lines 3950--3953 []\T1/ptm/m/n/10 Where sup-ported (\T1/zi4/m/sl/10 texi2dvi \T1/ptm/m/n/10 5.0 and later; \T1/zi4/m/sl/10 texify.exe \T1/ptm/m/n/10 from MiK-TeX), op-tion [1792] Underfull \hbox (badness 1137) in paragraph at lines 4048--4050 []\T1/ptm/m/n/10 a ma-trix spec-i-fy-ing all pack-ages in-stalled on the lo-cal sys-tem, as from [1793] [1794] [1795] [1796] Underfull \hbox (badness 1838) in paragraph at lines 4257--4263 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4257--4263 \T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [1797] Underfull \hbox (badness 5726) in paragraph at lines 4337--4342 []\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/sl/10 TR UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/sl/10 DependsList \T1/ptm/m/n/10 ob-ject Underfull \hbox (badness 7221) in paragraph at lines 4337--4342 \T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo r in-stance if there was [1798] [1799] Underfull \hbox (badness 2197) in paragraph at lines 4486--4496 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][]\T1/zi4 /m/sl/10 available.packages[][][]\T1/ptm/m/n/10 : Underfull \hbox (badness 2229) in paragraph at lines 4486--4496 \T1/ptm/m/n/10 fields will al-ways be in-cluded, plus the file name in field \T 1/zi4/m/sl/10 "File" \T1/ptm/m/n/10 if [1800] Underfull \hbox (badness 1571) in paragraph at lines 4549--4553 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [1801] [1802] [1803]) (./utils-pkg.tex [1804] Chapter 14. Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ', [1805] [1806] [1807] [1808] [1809] [1810] [1811] [1812] [1813] Underfull \hbox (badness 10000) in paragraph at lines 620--626 []\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1 0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 620--626 \T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the [1814] [1815] Underfull \hbox (badness 5847) in paragraph at lines 753--759 []\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to se-lect which of the pack-ages on the repos-i-to- Underfull \hbox (badness 4229) in paragraph at lines 753--759 \T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi 4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as Underfull \hbox (badness 3861) in paragraph at lines 821--826 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/ 10 "License_is_FOSS"\T1/ptm/m/n/10 , [1816] [1817] [1818] Underfull \hbox (badness 1430) in paragraph at lines 992--999 \T1/ptm/m/n/10 in-di-cat-ing that the bib-tex code should be given in ad-di-tio n to the for- Underfull \hbox (badness 1931) in paragraph at lines 992--999 \T1/ptm/m/n/10 mat-ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not mo re than $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is Underfull \hbox (badness 1038) in paragraph at lines 992--999 \T1/ptm/m/n/10 taken as [][]\T1/zi4/m/sl/10 getOption[][][]("citation.bibtex.ma x", 1) \T1/ptm/m/n/10 which is \T1/zi4/m/sl/10 1 \T1/ptm/m/n/10 typ-i-cally. Underfull \hbox (badness 1817) in paragraph at lines 992--999 \T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f ault by Underfull \hbox (badness 10000) in paragraph at lines 1003--1005 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [1819] [1820] [1821] [1822] [1823] [1824] [1825] Underfull \hbox (badness 1371) in paragraph at lines 1482--1484 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [1826] [1827] [1828] [1829] [1830] [1831] [1832] Underfull \hbox (badness 2057) in paragraph at lines 1959--1961 []\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th is func-tion is in-voked for its side ef-fect of up-dat-ing [1833] [1834] Underfull \hbox (badness 10000) in paragraph at lines 2054--2056 []\T1/ptm/m/n/10 One can in-clude an auto-generated pack-age ci-ta-tion in the `\T1/zi4/m/sl/10 CITATION\T1/ptm/m/n/10 ' file via [1835] Underfull \hbox (badness 5189) in paragraph at lines 2156--2158 []\T1/ptm/m/n/10 A list of keys that have been pre-vi-ously cited, to be used w hen [1836] [1837] [1838] Underfull \hbox (badness 1661) in paragraph at lines 2374--2381 []\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sim-pli-fied to an [][]\T1/zi4/m/sl/10 array[][][] \T1/ptm/m/n/10 (typ-i- [1839] Underfull \hbox (badness 1748) in paragraph at lines 2390--2393 []\T1/ptm/m/n/10 A [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4 /m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m /n/10 ar-gu-ment above. In the lat-ter case, the iden-tity [1840] [1841] [1842] [1843] [1844] [1845] Underfull \hbox (badness 10000) in paragraph at lines 2800--2804 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/sl/10 .tab\T1/ptm/m/n/10 ', `\T1/zi4/ m/sl/10 .txt\T1/ptm/m/n/10 ' or `\T1/zi4/m/sl/10 .TXT\T1/ptm/m/n/10 ' are read us-ing Overfull \hbox (59.4187pt too wide) in paragraph at lines 2805--2808 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/sl/10 .csv\T1/ptm/m/n/10 ' or `\T1/zi 4/m/sl/10 .CSV\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/sl/10 read.table[] [][](..., header = TRUE, sep = ";", as.is=FALSE)\T1/ptm/m/n/10 , [1846] [1847] [1848] [1849] [1850] [1851] [1852] [1853] [1854] Underfull \hbox (badness 1430) in paragraph at lines 3484--3492 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the Underfull \hbox (badness 1231) in paragraph at lines 3533--3539 []\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers via en-vi-ron-ment vari-able [1855] [1856] Underfull \hbox (badness 10000) in paragraph at lines 3686--3688 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][]\T1/zi4/m/sl/10 dow nload.file[][][] \T1/ptm/m/n/10 and [1857] [1858] [1859] [1860] [1861] [1862] [1863] [1864] [1865] [1866] [1867]pdf TeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.4373 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.format.1}) has been already used, dupl icate ignored \relax l.4373 ...mat Unordered and Ordered Lists}{format} [1868] [1869] [1870] [1871] [1872] [1873] [1874] [1875] [1876] [1877] [1878] [1879] [1880] [1881] [1882] Underfull \hbox (badness 1371) in paragraph at lines 5370--5372 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [1883] Underfull \hbox (badness 1502) in paragraph at lines 5459--5464 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 5459--5464 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [1884] [1885] [1886] Underfull \hbox (badness 10000) in paragraph at lines 5632--5641 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, [1887] Underfull \hbox (badness 2150) in paragraph at lines 5695--5698 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [1888] [1889] Underfull \hbox (badness 3118) in paragraph at lines 5832--5834 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for Underfull \hbox (badness 2409) in paragraph at lines 5865--5869 []\T1/ptm/m/n/10 To in-stall a source pack-age with com-piled code only for the sub-architecture used by [1890] Underfull \hbox (badness 1325) in paragraph at lines 5973--5977 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/sl/10 available.packag es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able [1891] Underfull \hbox (badness 10000) in paragraph at lines 6056--6059 []\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to be passed Underfull \hbox (badness 10000) in paragraph at lines 6056--6059 \T1/ptm/m/n/10 to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a source pac k-age in-stall. E.g., [1892] Underfull \hbox (badness 3219) in paragraph at lines 6129--6136 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/sl/ 10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 6129--6136 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 6129--6136 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by [1893] Underfull \hbox (badness 10000) in paragraph at lines 6229--6234 [][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/ 10 , [1894] [1895] [1896] [1897] [1898] [1899] [1900] [1901] [1902] [1903] [1904] [1905] [1906] [1907] [1908] [1909] [1910] [1911] [1912] Underfull \vbox (badness 3029) has occurred while \output is active [1913] [1914] [1915] [1916] Underfull \hbox (badness 10000) in paragraph at lines 7662--7664 []\T1/ptm/m/n/10 for \T1/zi4/m/sl/10 asDateBuilt()\T1/ptm/m/n/10 , a [][]\T1/zi 4/m/sl/10 character[][][] \T1/ptm/m/n/10 string as from Underfull \hbox (badness 10000) in paragraph at lines 7676--7678 []\T1/zi4/m/sl/10 packageVersion() \T1/ptm/m/n/10 is a con-ve-nience short-cut, al-low-ing things like Underfull \hbox (badness 2310) in paragraph at lines 7684--7689 []\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [1917] [1918] [1919] [1920] [1921] [1922] [1923] [1924] Underfull \hbox (badness 1789) in paragraph at lines 8278--8280 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [1925] [1926] [1927] [1928] [1929] [1930] [1931] [1932] [1933] Underfull \vbox (badness 5533) has occurred while \output is active [1934] [1935] [1936] Underfull \hbox (badness 1097) in paragraph at lines 9111--9114 []\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b e used on Win-dows, in which case [1937] [1938] Underfull \hbox (badness 3000) in paragraph at lines 9247--9252 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t able[][][]\T1/ptm/m/n/10 ; [1939] [1940] [1941] [1942] [1943] [1944] [1945] [1946] Underfull \hbox (badness 2134) in paragraph at lines 9830--9835 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write. table[][][]\T1/ptm/m/n/10 ; [1947] [1948] [1949] [1950] [1951] [1952] Underfull \hbox (badness 5077) in paragraph at lines 10255--10259 []\T1/zi4/m/sl/10 as.roman \T1/ptm/m/n/10 cre-ates ob-jects of class \T1/zi4/m/ sl/10 "roman" \T1/ptm/m/n/10 which are in-ter-nally rep-re-sented as in-te- Underfull \hbox (badness 2269) in paragraph at lines 10255--10259 \T1/ptm/m/n/10 gers, and have suit-able meth-ods for print-ing, for-mat-ting, s ub-set-ting, co-er-cion, etc, see Underfull \hbox (badness 2469) in paragraph at lines 10267--10271 []\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia , The Free En-cy-clo-pe-dia. Underfull \hbox (badness 3428) in paragraph at lines 10267--10271 [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / w / index . php ? title = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac- [1953] [1954] [1955] [1956] Underfull \hbox (badness 4060) in paragraph at lines 10544--10547 []\T1/ptm/m/n/10 If `\T1/zi4/m/sl/10 --default-packages\T1/ptm/m/n/10 ' is not used, then \T1/zi4/m/sl/10 Rscript \T1/ptm/m/n/10 checks the en-vi-ron-ment var i-able [1957] Overfull \hbox (18.77168pt too wide) in paragraph at lines 10567--10567 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] [1958] Underfull \hbox (badness 10000) in paragraph at lines 10630--10632 []\T1/ptm/m/n/10 For \T1/zi4/m/sl/10 type = "txt"\T1/ptm/m/n/10 , [][]\T1/zi4/m /sl/10 file.show[][][] \T1/ptm/m/n/10 is used. [][]\T1/zi4/m/sl/10 vignette[][] []\T1/ptm/m/n/10 s are nicely viewed via [1959] [1960] Underfull \hbox (badness 2150) in paragraph at lines 10806--10808 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac s / manual / [1961] [1962] [1963] [1964] Underfull \hbox (badness 10000) in paragraph at lines 11025--11029 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n ow taken from the en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 11056--11062 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a [1965] Underfull \hbox (badness 2096) in paragraph at lines 11174--11177 []\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing whether PNG fig-ures should be gen-er-ated. Ig-nored if Underfull \hbox (badness 1527) in paragraph at lines 11178--11181 []\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing whether JPEG fig-ures should be gen-er-ated. Ig-nored if [1966] Underfull \hbox (badness 1009) in paragraph at lines 11250--11261 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If [1967] [1968] [1969] [1970] [1971] Underfull \hbox (badness 3780) in paragraph at lines 11556--11560 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1 /zi4/m/sl/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via Underfull \hbox (badness 2635) in paragraph at lines 11572--11575 []\T1/ptm/m/n/10 Repository `\T1/zi4/m/sl/10 CRAN\T1/ptm/m/n/10 ' is treated sp e-cially: the value is taken from the cur-rent set-ting of [1972] [1973] [1974] [1975] [1976] [1977] Underfull \hbox (badness 2818) in paragraph at lines 11941--11946 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 (de-fault), [] []\T1/zi4/m/sl/10 deparse[][][](control = ) \T1/ptm/m/n/10 will not have Underfull \hbox (badness 5970) in paragraph at lines 11950--11953 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive [1978] [1979] [1980] [1981] Underfull \hbox (badness 10000) in paragraph at lines 12213--12215 []\T1/ptm/m/n/10 Options other than \T1/zi4/m/sl/10 memory = "none" \T1/ptm/m/n /10 ap-ply only to files pro-duced by [1982] [1983] Underfull \hbox (badness 1057) in paragraph at lines 12370--12377 []\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 syntax = NULL \T1/ptm/m/n/10 (the de-fault) then the avail-able syn-tax ob-jects are con-sulted in turn, [1984] [1985] [1986] [1987] Underfull \hbox (badness 6510) in paragraph at lines 12642--12646 []\T1/ptm/m/n/10 When ar-gu-ment \T1/zi4/m/sl/10 tar \T1/ptm/m/n/10 is set to t he com-mand \T1/zi4/m/sl/10 tar \T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment vari-a ble Underfull \hbox (badness 10000) in paragraph at lines 12649--12652 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 12649--12652 \T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [1988] [1989] [1990] [1991] [1992] [1993] [1994] [1995] [1996] Underfull \hbox (badness 10000) in paragraph at lines 13238--13243 []\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/sl/10 destdir \T1/ptm/m/n/10 and \ T1/zi4/m/sl/10 dependencies \T1/ptm/m/n/10 to be passed to Underfull \hbox (badness 3861) in paragraph at lines 13238--13243 [][]\T1/zi4/m/sl/10 install.packages[][][] \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 i gnore_repo_cache\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 max_repo_cache_age \T1/ptm/m/n /10 and Underfull \hbox (badness 1052) in paragraph at lines 13244--13246 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See Underfull \hbox (badness 10000) in paragraph at lines 13274--13279 []\T1/ptm/m/n/10 For how the list of suit-able avail-able pack-ages is de-ter-m ined see Underfull \hbox (badness 10000) in paragraph at lines 13274--13279 [][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 . \T1/zi4/m/sl/10 av ailable = NULL \T1/ptm/m/n/10 make a call to Underfull \hbox (badness 1297) in paragraph at lines 13274--13279 \T1/zi4/m/sl/10 available.packages(contriburl = contriburl, method = method) \T 1/ptm/m/n/10 and hence by [1997] Underfull \hbox (badness 10000) in paragraph at lines 13303--13306 [][][]\T1/zi4/m/sl/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.package s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n /10 , [1998] [1999] [2000] Overfull \hbox (23.85939pt too wide) in paragraph at lines 13545--13548 [][][]\T1/zi4/m/sl/10 browseVignettes[][][] \T1/ptm/m/n/10 for an HTML-based vi -gnette browser; [][]\T1/zi4/m/sl/10 RShowDoc[][][](, package = "") [2001] [2002] [2003] Underfull \hbox (badness 1454) in paragraph at lines 13696--13700 []\T1/ptm/m/n/10 the char-ac-ter(s) to print at the end of each line (row). For ex-am-ple, [2004] Underfull \hbox (badness 10000) in paragraph at lines 13766--13768 []\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec- tion [2005] [2006] [2007]) [2008] [2009] [2010] (./KernSmooth-pkg.tex Chapter 15. [2011] [2012] [2013] [2014] [2015] [2016] [2017] [2018] [2019] [2020]) (./MASS-pkg.tex Chapter 16. [2021] [2022] [2023] [2024] [2025] [2026] [2027] [2028] [2029] [2030] [2031] [2032] [2033] [2034] [2035] [2036] [2037] [2038] [2039] [2040] [2041] [2042] Underfull \hbox (badness 7256) in paragraph at lines 1603--1605 []\T1/ptm/m/n/10 logical. If true and the re-sult would be sparse (only true fo r [2043] [2044] [2045] [2046] [2047] [2048] [2049] [2050] [2051] [2052] [2053] [2054] [2055] [2056] [2057] Underfull \hbox (badness 7944) in paragraph at lines 2693--2696 []\T1/ptm/m/n/10 further ar-gu-ments for \T1/zi4/m/sl/10 plot \T1/ptm/m/n/10 an d graph-i-cal pa-ram-e-ters. Note that [2058] [2059] [2060] Underfull \hbox (badness 10000) in paragraph at lines 2863--2868 []\T1/ptm/m/n/10 Distributions \T1/zi4/m/sl/10 "beta"\T1/ptm/m/n/10 , \T1/zi4/m /sl/10 "cauchy"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "chi-squared"\T1/ptm/m/n/10 , \ T1/zi4/m/sl/10 "exponential"\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2863--2868 \T1/zi4/m/sl/10 "gamma"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "geometric"\T1/ptm/m/n/ 10 , \T1/zi4/m/sl/10 "log-normal"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "lognormal"\T 1/ptm/m/n/10 , \T1/zi4/m/sl/10 "logistic"\T1/ptm/m/n/10 , Underfull \hbox (badness 1184) in paragraph at lines 2863--2868 \T1/zi4/m/sl/10 "negative binomial"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "normal"\T1 /ptm/m/n/10 , \T1/zi4/m/sl/10 "Poisson"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "t" \T1 /ptm/m/n/10 and \T1/zi4/m/sl/10 "weibull" \T1/ptm/m/n/10 are [2061] [2062] Underfull \hbox (badness 4686) in paragraph at lines 3031--3033 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds Underfull \hbox (badness 2591) in paragraph at lines 3045--3049 []\T1/ptm/m/n/10 where \T1/zi4/m/sl/10 p1\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 p2\T1 /ptm/m/n/10 , ...are pos-i-tive in-te-gers, ter-mi-nat-ing ei-ther at \T1/zi4/m /sl/10 cycles \T1/ptm/m/n/10 terms or when a [2063] [2064] [2065] Underfull \hbox (badness 10000) in paragraph at lines 3233--3235 []\T1/ptm/m/n/10 Fitted model ob-ject from a \T1/zi4/m/sl/10 Gamma \T1/ptm/m/n/ 10 fam-ily or \T1/zi4/m/sl/10 quasi \T1/ptm/m/n/10 fam-ily with [2066] [2067] [2068] [2069] [2070] [2071] [2072] [2073] [2074] [2075] [2076] [2077] [2078] [2079] [2080] [2081] [2082] [2083] [2084] [2085] [2086] [2087] Underfull \hbox (badness 10000) in paragraph at lines 4810--4813 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm [2088] Underfull \hbox (badness 10000) in paragraph at lines 4888--4891 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm [2089] [2090] [2091] [2092] [2093] [2094] Underfull \hbox (badness 1975) in paragraph at lines 5341--5343 []\T1/ptm/m/n/10 the value of the cri-te-rion for the best so-lu-tion found, in the case of [2095] [2096] [2097] [2098] [2099] [2100] [2101] [2102] [2103] [2104] [2105]pdf TeX warning (ext4): destination with the same identifier (name{Rfn.npk}) has be en already used, duplicate ignored \relax l.6130 ...sical N, P, K Factorial Experiment}{npk} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.npk.1}) has been already used, duplica te ignored \relax l.6130 ...sical N, P, K Factorial Experiment}{npk} [2106] Underfull \hbox (badness 1931) in paragraph at lines 6248--6252 []\T1/ptm/m/n/10 Given a ma-trix, \T1/zi4/m/sl/10 M\T1/ptm/m/n/10 , find a ma-t rix \T1/zi4/m/sl/10 N \T1/ptm/m/n/10 giv-ing a ba-sis for the (left) null space . That is [2107] [2108] [2109] [2110] Underfull \vbox (badness 10000) has occurred while \output is active [2111] [2112] [2113] [2114] [2115] [2116] [2117] [2118] Underfull \hbox (badness 10000) in paragraph at lines 7097--7104 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm [2119] Underfull \hbox (badness 3138) in paragraph at lines 7168--7174 []\T1/ptm/m/n/10 The log-log and com-ple-men-tary log-log links are the in-crea s-ing func-tions $\OML/cmm/m/it/10 F[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 p\OT1/c mr/m/n/10 ) = [2120] [2121] [2122] Underfull \hbox (badness 6775) in paragraph at lines 7347--7350 \T1/ptm/m/n/10 only the first \T1/zi4/m/sl/10 dimen \T1/ptm/m/n/10 dis-crim-i-n ant com-po-nents are used (ex-cept for [2123] [2124] [2125] [2126] [2127] [2128] [2129] [2130] [2131] Underfull \hbox (badness 4686) in paragraph at lines 7980--7982 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds Underfull \hbox (badness 2591) in paragraph at lines 7996--8000 []\T1/ptm/m/n/10 where \T1/zi4/m/sl/10 p1\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 p2\T1 /ptm/m/n/10 , ...are pos-i-tive in-te-gers, ter-mi-nat-ing ei-ther at \T1/zi4/m /sl/10 cycles \T1/ptm/m/n/10 terms or when a [2132] [2133] [2134] [2135] [2136] [2137] [2138] [2139] [2140] [2141] [2142] [2143] [2144] [2145] [2146] [2147] [2148] [2149] [2150] Underfull \hbox (badness 1259) in paragraph at lines 9380--9382 []\T1/ptm/m/n/10 if \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 re-turn ob-served and e x-pected fre-quen-cies in the re-sult. Us-ing [2151] [2152] [2153] [2154] [2155] [2156] [2157] [2158] [2159] [2160] [2161] [2162] [2163] [2164] [2165] [2166] [2167] [2168]) (./Matrix-pkg.tex Chapter 17. Underfull \hbox (badness 10000) in paragraph at lines 41--44 []\T1/ptm/m/n/10 Note that the cur-rent im-ple-men-ta-tion de-tails are sub-jec t to change, and if you Underfull \hbox (badness 10000) in paragraph at lines 41--44 \T1/ptm/m/n/10 con-sider work-ing with these classes, please con-tact the pack- age main-tain-ers [2169] Underfull \hbox (badness 1769) in paragraph at lines 95--98 []\T1/ptm/m/n/10 This is cur-rently ex-per-i-men-tal and not yet used for our o wn code. Please con-tact us [2170] [2171] [2172] [2173] Underfull \hbox (badness 5119) in paragraph at lines 508--512 []\T1/ptm/m/n/10 logical; if true the re-sult will be sym-met-ric (in-her-it-in g from class [2174] [2175] Underfull \hbox (badness 2418) in paragraph at lines 597--600 []\T1/ptm/m/n/10 The value of \T1/zi4/m/sl/10 bdiag() \T1/ptm/m/n/10 in-heris f rom class [][]\T1/zi4/m/sl/10 CsparseMatrix[][][]\T1/ptm/m/n/10 , whereas \T1/z i4/m/sl/10 .bdiag() \T1/ptm/m/n/10 re-turns a [2176] [2177] [2178] [2179] [2180] Underfull \hbox (badness 2564) in paragraph at lines 1022--1024 []\T1/zi4/m/sl/10 signature(from = "CHMfactor", to = "sparseMatrix") \T1/ptm/m/ n/10 (or equiv-a-lently, [2181] [2182]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.chol}) has been already used, duplicate ignored \relax l.1134 ...- 'Matrix' S4 Generic and Methods}{chol} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.chol.1}) has been already used, duplic ate ignored \relax l.1134 ...- 'Matrix' S4 Generic and Methods}{chol} [2183pdfTeX warning (ext4): destination with the same identifier (name{Rfn.chol,dsCMatrix.Rdash.method}) ha s been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.1209 \item[chol] \code{signature(x = "dgeMatrix")}: works viapdfTeX warning ( ext4): destination with the same identifier (name{Rfn.chol,lsCMatrix.Rdash.meth od}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.1209 \item[chol] \code{signature(x = "dgeMatrix")}: works viapdfTeX warning ( ext4): destination with the same identifier (name{Rfn.chol,nsCMatrix.Rdash.meth od}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.1209 \item[chol] \code{signature(x = "dgeMatrix")}: works via] [2184] [2185] Underfull \hbox (badness 2277) in paragraph at lines 1388--1391 []\T1/ptm/m/n/10 This is a generic func-tion with spe-cial meth-ods for dif-fer -ent types of ma-tri-ces. Use Underfull \hbox (badness 5741) in paragraph at lines 1435--1439 []\T1/ptm/m/n/10 Class def-i-ni-tions [][]\T1/zi4/m/sl/10 CHMfactor[][][] \T1/p tm/m/n/10 and [][]\T1/zi4/m/sl/10 dsCMatrix[][][] \T1/ptm/m/n/10 and func-tion [][]\T1/zi4/m/sl/10 expand[][][]\T1/ptm/m/n/10 . Note the ex-tra [2186] [2187] Underfull \hbox (badness 3930) in paragraph at lines 1531--1538 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/sl/10 n ew("Cholesky", ...) \T1/ptm/m/n/10 or Underfull \hbox (badness 1097) in paragraph at lines 1560--1563 []\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "MatrixFactorization" \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 "dtrMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi4/m/sl/10 " dgeMatrix"\T1/ptm/m/n/10 , by class Underfull \hbox (badness 1783) in paragraph at lines 1566--1570 []\T1/ptm/m/n/10 Both these fac-tor-iza-tions can \T1/ptm/m/it/10 di-rectly \T1 /ptm/m/n/10 be treated as (tri-an-gu-lar) ma-tri-ces, as they ex-tend [2188]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.col Sums}) has been already used, duplicate ignored \relax l.1623 ... Row and Column Sums and Means}{colSums} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.colSums.1}) has been already used, dup licate ignored \relax l.1623 ... Row and Column Sums and Means}{colSums} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.colMeans}) has been already used, dupl icate ignored \relax l.1624 \aliasA{colMeans}{colSums}{colMeans} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.rowMeans}) has been already used, duplicate i gnored \relax l.1645 \aliasA{rowMeans}{colSums}{rowMeans} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.rowSums}) has been already used, duplicate ig nored \relax l.1656 \aliasA{rowSums}{colSums}{rowSums} [2189] [2190] [2191] Underfull \hbox (badness 3547) in paragraph at lines 1875--1878 []\T1/ptm/m/n/10 a num-ber $\OML/cmm/m/it/10 > \OT1/cmr/m/n/10 0$\T1/ptm/m/n/10 , the es-ti-mated (1-norm) con-di-tion num-ber $[]$; when [2192] [2193] [2194] [2195] [2196] [2197] [2198] [2199] [2200] Underfull \hbox (badness 2368) in paragraph at lines 2610--2614 []\T1/ptm/m/n/10 However this means that a ma-trix typ-i-cally can tbe stored i n more than one pos-si-ble [2201] [2202] Underfull \hbox (badness 6842) in paragraph at lines 2700--2703 []\T1/zi4/m/sl/10 Diagonal() \T1/ptm/m/n/10 re-turns an ob-ject of class [][]\T 1/zi4/m/sl/10 ddiMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/sl/10 ldiMatrix[] [][] \T1/ptm/m/n/10 (with ``su-per-class'' [2203] Underfull \hbox (badness 10000) in paragraph at lines 2983--2985 []\T1/zi4/m/sl/10 signature(x = "nMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equi v-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion Underfull \hbox (badness 7814) in paragraph at lines 2986--2990 []\T1/zi4/m/sl/10 signature(x = "diagonalMatrix")\T1/ptm/m/n/10 : all these gro up meth-ods re-turn a [2204] [2205] [2206] Underfull \hbox (badness 10000) in paragraph at lines 3243--3245 [][][]\T1/zi4/m/sl/10 drop0[][][](x, tol=1e-10) \T1/ptm/m/n/10 is some-times pr efer-able to (and more ef-fi-cient than) [2207] [2208] [2209] Underfull \hbox (badness 3343) in paragraph at lines 3528--3532 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/sl/10 n ew("dsCMatrix", ...) \T1/ptm/m/n/10 or [2210] [2211] [2212] [2213] Underfull \hbox (badness 3343) in paragraph at lines 3813--3815 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/sl/10 n ew("dsyMatrix", ...) \T1/ptm/m/n/10 or [2214] [2215] Underfull \hbox (badness 2318) in paragraph at lines 3969--3973 []\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "dgCMatrix"\T1/ptm/m/n/10 , di-rectly. C lass \T1/zi4/m/sl/10 "triangularMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi 4/m/sl/10 "dMatrix"\T1/ptm/m/n/10 , [2216] [2217] [2218] [2219] [2220] Underfull \hbox (badness 10000) in paragraph at lines 4393--4398 []\T1/ptm/m/n/10 The ex-po-nen-tial of a ma-trix is de-fined as the in-fi-nite Tay-lor se-ries [2221] [2222] [2223] Overfull \hbox (3.77782pt too wide) in paragraph at lines 4527--4527 [] \T1/zi4/m/n/9 readHB(gzcon(url("http://www.cise.ufl.edu/research/sparse/RB/ Boeing/msc00726.tar.gz"))))[] Overfull \hbox (48.77782pt too wide) in paragraph at lines 4530--4530 [] \T1/zi4/m/n/9 readMM(gzcon(url("ftp://math.nist.gov/pub/MatrixMarket2/Harwe ll-Boeing/counterx/jgl009.mtx.gz"))))[] [2224] [2225] Underfull \hbox (badness 1931) in paragraph at lines 4759--4761 []\T1/ptm/m/n/10 a string spec-i-fy-ing how the \T1/zi4/m/sl/10 zero.print \T1/ ptm/m/n/10 codes should be aligned, see [2226] [2227] [2228] [2229] [2230] Underfull \hbox (badness 5862) in paragraph at lines 5079--5082 []\T1/ptm/m/n/10 All meth-ods cur-rently end up call-ing the method for the [][ ]\T1/zi4/m/sl/10 dgTMatrix[][][] \T1/ptm/m/n/10 class. Use [2231] [2232] Underfull \hbox (badness 3229) in paragraph at lines 5220--5229 []\T1/ptm/m/n/10 While ``row-indexing'' (of more than one row \T1/ptm/m/it/10 o r \T1/ptm/m/n/10 us-ing \T1/zi4/m/sl/10 drop=FALSE\T1/ptm/m/n/10 ) stays within the Underfull \hbox (badness 3942) in paragraph at lines 5262--5264 []\T1/zi4/m/sl/10 signature(x = "matrix", y = "indMatrix") \T1/ptm/m/n/10 and o ther sig-na-tures (use [2233] [2234] Underfull \hbox (badness 2846) in paragraph at lines 5376--5378 []\T1/ptm/m/n/10 logical in-di-cat-ing if \T1/zi4/m/sl/10 p \T1/ptm/m/n/10 con- tains val-ues \T1/zi4/m/sl/10 0:(n-1) \T1/ptm/m/n/10 or rather (by de-fault, [2235] [2236] [2237] Underfull \hbox (badness 1014) in paragraph at lines 5654--5657 []\T1/zi4/m/sl/10 isTriangular(M) \T1/ptm/m/n/10 re-turns a [][]\T1/zi4/m/sl/10 logical[][][] \T1/ptm/m/n/10 in-di-cat-ing if \T1/zi4/m/sl/10 M \T1/ptm/m/n/10 is a tri-an-gu-lar ma-trix. Anal-o-gously, [2238] [2239] [2240] [2241] [2242] Underfull \hbox (badness 6944) in paragraph at lines 5969--5972 []\T1/zi4/m/sl/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2243] Underfull \hbox (badness 2478) in paragraph at lines 6081--6086 []\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "ldenseMatrix"\T1/ptm/m/n/10 , di-rectly . Class \T1/zi4/m/sl/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/sl/10 "lde nseMatrix"\T1/ptm/m/n/10 . Class [2244] Underfull \hbox (badness 10000) in paragraph at lines 6089--6092 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ); use, e.g., [2245] Underfull \hbox (badness 5161) in paragraph at lines 6281--6284 []\T1/zi4/m/sl/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2246] Underfull \hbox (badness 10000) in paragraph at lines 6379--6382 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2247] Underfull \hbox (badness 10000) in paragraph at lines 6454--6457 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2248] Underfull \hbox (badness 2050) in paragraph at lines 6530--6533 []\T1/zi4/m/sl/10 lu() \T1/ptm/m/n/10 is a generic func-tion with spe-cial meth -ods for dif-fer-ent types of ma-tri-ces. Use [2249] [2250] [2251] Underfull \hbox (badness 6268) in paragraph at lines 6736--6739 []\T1/ptm/m/n/10 Note that when the re-sult-ing ma-trix is di-ag-o-nal (``math- e-mat-i-cally''), [2252] Underfull \hbox (badness 6268) in paragraph at lines 6760--6764 []\T1/ptm/m/n/10 Most of the time, the func-tion works via a tra-di-tional (\T1 /ptm/m/it/10 full\T1/ptm/m/n/10 ) [][]\T1/zi4/m/sl/10 matrix[][][]\T1/ptm/m/n/1 0 . How-ever, [2253]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.det }) has been already used, duplicate ignored \relax l.6853 \aliasA{det}{Matrix-class}{det} Underfull \hbox (badness 1412) in paragraph at lines 6951--6954 []\T1/zi4/m/sl/10 signature(object = "Matrix")\T1/ptm/m/n/10 : draws an [][]\T1 /zi4/m/sl/10 image[][][] \T1/ptm/m/n/10 of the ma-trix en-tries, us-ing Underfull \hbox (badness 10000) in paragraph at lines 6956--6959 [2254]pdfTeX warning (ext4): destination with the same identifier (name{Rfn..Rp cent.*.Rpcent.}) has been already used, duplicate ignored \relax l.7029 ...*\%}{matrix-products}{.Rpcent.*.Rpcent.} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.crossprod}) has been already used, dup licate ignored \relax l.7137 ...A{crossprod}{matrix-products}{crossprod} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.tcrossprod}) has been already used, du plicate ignored \relax l.7237 ...tcrossprod}{matrix-products}{tcrossprod} [2255pdfTeX warning (ext4): destination with the same identifier (name{Rfn.crossprod.Rdash.methods}) has be en already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.7341 pdfTeX warning (ext4): destination with the same identifier (name{Rfn.tc rossprod.Rdash.methods}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.7341 ] [2256] Underfull \hbox (badness 3942) in paragraph at lines 7411--7416 []\T1/zi4/m/sl/10 signature(x = "dtrMatrix", y = "matrix") \T1/ptm/m/n/10 and o ther sig-na-tures (use [2257] [2258] Underfull \hbox (badness 1237) in paragraph at lines 7562--7564 []\T1/zi4/m/sl/10 signature(a = "MatrixFactorization", b= .)\T1/ptm/m/n/10 : so lve $\OML/cmm/m/it/10 Ax \OT1/cmr/m/n/10 = \OML/cmm/m/it/10 b$ \T1/ptm/m/n/10 f or $\OML/cmm/m/it/10 x$\T1/ptm/m/n/10 ; see Underfull \hbox (badness 1430) in paragraph at lines 7570--7575 []\T1/ptm/m/n/10 classes in-her-it-ing from \T1/zi4/m/sl/10 "MatrixFactorizatio n"\T1/ptm/m/n/10 , such as [][]\T1/zi4/m/sl/10 LU[][][]\T1/ptm/m/n/10 , [][]\T1 /zi4/m/sl/10 Cholesky[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 CHMfactor[][][] \T1/ptm/m/n/10 , and [2259] Underfull \hbox (badness 6944) in paragraph at lines 7641--7644 []\T1/zi4/m/sl/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2260] Underfull \hbox (badness 3118) in paragraph at lines 7693--7695 []\T1/ptm/m/n/10 logical in-di-cat-ing if \T1/zi4/m/sl/10 X <- (X + t(X))/2 \T1 /ptm/m/n/10 should be done, af-ter [2261] [2262] Underfull \vbox (badness 10000) has occurred while \output is active [2263] Underfull \hbox (badness 2478) in paragraph at lines 7896--7901 []\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "ndenseMatrix"\T1/ptm/m/n/10 , di-rectly . Class \T1/zi4/m/sl/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/sl/10 "nde nseMatrix"\T1/ptm/m/n/10 . Class Underfull \hbox (badness 10000) in paragraph at lines 7904--7907 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ); use, e.g., [2264] [2265] [2266]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.norm}) has been already used, duplicate ignored \relax l.8138 \HeaderA{norm}{Matrix Norms}{norm} pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.norm.1}) has been already used, duplicate ignor ed \relax l.8138 \HeaderA{norm}{Matrix Norms}{norm} [2267] [2268] Underfull \hbox (badness 5161) in paragraph at lines 8411--8414 []\T1/zi4/m/sl/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2269] Underfull \hbox (badness 10000) in paragraph at lines 8501--8504 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2270] Underfull \hbox (badness 10000) in paragraph at lines 8577--8580 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2271] Underfull \vbox (badness 10000) has occurred while \output is active [2272] Underfull \hbox (badness 6141) in paragraph at lines 8703--8705 []\T1/zi4/m/sl/10 signature(x = "matrix", y = "pMatrix") \T1/ptm/m/n/10 and oth er sig-na-tures (use [2273] [2274] [2275] [2276]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.qr}) has been already used, duplicate ignored \relax l.8938 \aliasA{qr}{qr-methods}{qr} Underfull \hbox (badness 5119) in paragraph at lines 8984--8987 []\T1/ptm/m/n/10 QR de-com-po-si-tion of a gen-eral sparse double-precision ma- trix with [2277] [2278] Underfull \hbox (badness 10000) in paragraph at lines 9104--9110 []\T1/ptm/m/n/10 for a dense ma-trix, this is the rank of [2279] [2280]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.rcond}) has been already used, duplicate ignored \relax l.9234 ... the Reciprocal Condition Number}{rcond} [2281] [2282] [2283] [2284] [2285] [2286] [2287] [2288]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.solve}) has been already used, duplicate ignored \relax l.9811 \aliasA{solve}{solve-methods}{solve} [2289] Underfull \hbox (badness 10000) in paragraph at lines 9948--9960 []\T1/ptm/m/n/10 The \T1/zi4/m/sl/10 solve \T1/ptm/m/n/10 meth-ods for a Underfull \hbox (badness 10000) in paragraph at lines 9974--9981 []\T1/ptm/m/n/10 with ex-tra ar-gu-ment list Underfull \hbox (badness 10000) in paragraph at lines 9987--9997 []\T1/ptm/m/n/10 with ex-tra ar-gu-ment list Underfull \hbox (badness 1122) in paragraph at lines 10021--10023 []\T1/ptm/m/n/10 all end up call-ing LA-PACK rou-tines \T1/zi4/m/sl/10 dsptri\T 1/ptm/m/n/10 , [2290] Underfull \hbox (badness 1210) in paragraph at lines 10035--10038 []\T1/ptm/m/n/10 , and sim-i-lar \T1/zi4/m/sl/10 b\T1/ptm/m/n/10 , in-clud-ing \T1/zi4/m/sl/10 "missing"\T1/ptm/m/n/10 , and Underfull \hbox (badness 10000) in paragraph at lines 10105--10108 []\T1/ptm/m/n/10 Construct a sparse model or ``de-sign'' ma-trix, form a for-mu la and data frame [2291] Underfull \hbox (badness 10000) in paragraph at lines 10141--10144 []\T1/ptm/m/n/10 character string or \T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or (co -er-ca-ble to) Underfull \hbox (badness 10000) in paragraph at lines 10152--10156 []\T1/ptm/m/n/10 should fac-tors have un-used lev-els dropped? The de-fault for [2292] [2293] [2294] [2295] [2296] [2297] [2298] [2299] [2300]pdfTeX warning (e xt4): destination with the same identifier (name{Rfn.qr.Q}) has been already us ed, duplicate ignored \relax l.10806 \aliasA{qr.Q}{sparseQR-class}{qr.Q} [2301] [2302] Underfull \hbox (badness 5036) in paragraph at lines 10992--10994 []\T1/ptm/m/n/10 vector of the non zero en-tries; may be miss-ing in which case a [2303] [2304] Underfull \hbox (badness 10000) in paragraph at lines 11198--11201 []\T1/zi4/m/sl/10 signature(x = "sparseVector") \T1/ptm/m/n/10 re-peat \T1/zi4/ m/sl/10 x\T1/ptm/m/n/10 , with the same ar-gu-ment list [2305] Underfull \vbox (badness 10000) has occurred while \output is active [2306] [2307] [2308] Underfull \hbox (badness 10000) in paragraph at lines 11467--11472 []\T1/ptm/m/n/10 The va-lid-ity checks do not re-quire a sym-met-ric \T1/zi4/m/ sl/10 Dimnames \T1/ptm/m/n/10 slot, so it can be [2309] Underfull \hbox (badness 2057) in paragraph at lines 11547--11549 []\T1/ptm/m/n/10 These are generic func-tions with sev-eral meth-ods for dif-fe r-ent ma-trix classes, use e.g., [2310] [2311] Underfull \hbox (badness 1831) in paragraph at lines 11722--11728 []\T1/ptm/m/n/10 For con-ve-nience, meth-ods for some op-er-a-tions such as \T1 /zi4/m/sl/10 %*% \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 crossprod \T1/ptm/m/n/10 ar e de-fined [2312] Underfull \hbox (badness 1902) in paragraph at lines 11757--11761 []\T1/ptm/m/n/10 Note that \T1/zi4/m/sl/10 new(.)\T1/ptm/m/n/10 , [][]\T1/zi4/m /sl/10 spMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/sl/10 sparseMatrix[][][] \T1/ptm/m/n/10 con-struc-tors for \T1/zi4/m/sl/10 "dgTMatrix" \T1/ptm/m/n/10 (a nd other [2313] [2314] [2315] [2316] [2317] [2318] Underfull \hbox (badness 6910) in paragraph at lines 12270--12272 []\T1/ptm/m/n/10 is cur-rently a sim-ple fall-back [2319] [2320] [2321]) (./boot-pkg.tex [2322] Chapter 18. [2323] [2324] [2325] [2326] [2327] [2328] [2329] [2330] [2331] [2332] Underfull \hbox (badness 5667) in paragraph at lines 797--807 \T1/ptm/m/n/10 or \T1/zi4/m/sl/10 parallel = "snow" \T1/ptm/m/n/10 us-ing the d e-fault clus-ter, a sec-ond ap-proach is used if [2333] Underfull \hbox (badness 1881) in paragraph at lines 824--826 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2334] Underfull \vbox (badness 10000) has occurred while \output is active [2335] [2336] Underfull \hbox (badness 10000) in paragraph at lines 1066--1070 []\T1/ptm/m/n/10 A vec-tor of char-ac-ter strings rep-re-sent-ing the type of i n-ter- Underfull \hbox (badness 10000) in paragraph at lines 1066--1070 \T1/ptm/m/n/10 vals re-quired. The value should be any sub-set of the val-ues [2337] Underfull \hbox (badness 2150) in paragraph at lines 1103--1109 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est. The de-fa ult value is [2338] [2339] [2340] [2341] Underfull \hbox (badness 1571) in paragraph at lines 1443--1445 []\T1/ptm/m/n/10 Rawlings, J.O. (1988) \T1/ptm/m/it/10 Ap-plied Re-gres-sion An al-y-sis\T1/ptm/m/n/10 . Wadsworth and Brooks/Cole Statis- [2342] [2343] [2344] [2345] [2346] [2347] Underfull \hbox (badness 1005) in paragraph at lines 1797--1804 []\T1/ptm/m/n/10 The sim-u-la-tion type. Pos-si-ble types are \T1/zi4/m/sl/10 " ordinary" \T1/ptm/m/n/10 (case re-sam-pling), [2348] [2349] Underfull \vbox (badness 10000) has occurred while \output is active [2350] Underfull \hbox (badness 7379) in paragraph at lines 2081--2083 []\T1/ptm/m/n/10 The length of time (in months) that the res-i-dent spent at Ch an-ning House. [2351] [2352] [2353] [2354] Underfull \hbox (badness 1565) in paragraph at lines 2335--2340 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est on the ori g-i-nal data set [2355] Underfull \hbox (badness 1881) in paragraph at lines 2429--2431 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2356] [2357] Underfull \hbox (badness 2970) in paragraph at lines 2533--2537 []\T1/ptm/m/n/10 The un-bi-ased es-ti-ma-tor uses a mul-ti-plier of \T1/zi4/m/s l/10 n/((n-1)*(n-2)) \T1/ptm/m/n/10 where \T1/zi4/m/sl/10 n \T1/ptm/m/n/10 is t he sam-ple Underfull \hbox (badness 2310) in paragraph at lines 2533--2537 \T1/ptm/m/n/10 size, if \T1/zi4/m/sl/10 unbiased \T1/ptm/m/n/10 is \T1/zi4/m/sl /10 FALSE \T1/ptm/m/n/10 then a mul-ti-plier of \T1/zi4/m/sl/10 1/n \T1/ptm/m/n /10 is used. This is mul-ti-plied by [2358] [2359] [2360] [2361] [2362] [2363] [2364] [2365] [2366] [2367] [2368] [2369] [2370] [2371] [2372] [2373] [2374] [2375] [2376] [2377] [2378] [2379] [2380] Underfull \hbox (badness 10000) in paragraph at lines 4187--4189 []\T1/ptm/m/n/10 The quan-tiles at which the plots are re-quired. The de-fault is [2381] [2382] [2383] Underfull \hbox (badness 2393) in paragraph at lines 4386--4389 []\T1/ptm/m/n/10 The lin-ear ap-prox-i-ma-tion to a boot-strap repli-cate with fre-quency vec-tor \T1/zi4/m/sl/10 f \T1/ptm/m/n/10 is given by [2384] [2385] [2386] [2387] [2388] [2389] [2390] [2391] Underfull \hbox (badness 3000) in paragraph at lines 4956--4959 []\T1/ptm/m/n/10 The in-dex of the statis-tic of in-ter-est within the out-put of a call to [2392] [2393] [2394] [2395] Underfull \hbox (badness 2293) in paragraph at lines 5235--5238 []\T1/ptm/m/n/10 An in-te-ger giv-ing the num-ber of classes to be used in the boot-strap Underfull \hbox (badness 1668) in paragraph at lines 5235--5238 \T1/ptm/m/n/10 his-togram. The de-fault is the in-te-ger be-tween 10 and 100 cl os-est to [2396] [2397] [2398] [2399] [2400] [2401] [2402] [2403] [2404] [2405] [2406] Underfull \hbox (badness 4954) in paragraph at lines 6018--6021 []\T1/ptm/m/n/10 The re-turned value is an ob-ject of class \T1/zi4/m/sl/10 "sa ddle.distn"\T1/ptm/m/n/10 . See the help file for [2407] [2408] [2409] [2410] [2411] [2412] [2413] [2414] [2415] Underfull \hbox (badness 1596) in paragraph at lines 6739--6743 []\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sec-ond ar-gu-m ent ex-pected by [2416] [2417] [2418] [2419] [2420] [2421] [2422] [2423] [2424] [2425]) (./class-pkg.tex [2426] Chapter 19. [2427] [2428] [2429] [2430] [2431] [2432] [2433] [2434] Underfull \hbox (badness 10000) in paragraph at lines 608--610 []\T1/ptm/m/n/10 the size of the code-book. De-faults to [2435] [2436] [2437] [2438] [2439] [2440] [2441] [2442]) (./cluster-pkg.tex Chapter 20. [2443] [2444] [2445] [2446] [2447] Underfull \vbox (badness 7777) has occurred while \output is active [2448] [2449] [2450] [2451] [2452] Underfull \hbox (badness 4144) in paragraph at lines 688--691 []\T1/ptm/m/n/10 Setting this to \T1/zi4/m/sl/10 FALSE \T1/ptm/m/n/10 saves mem -ory (and hence time), but dis-ables [2453] [2454] [2455] Underfull \hbox (badness 10000) in paragraph at lines 863--865 []\T1/ptm/m/n/10 list with sil-hou-ette width in-for-ma-tion for the best sam-p le, see [2456] [2457] Underfull \hbox (badness 10000) in paragraph at lines 974--976 []\T1/ptm/m/n/10 simply cor-re-sponds to the global max-i-mum, i.e., is Underfull \hbox (badness 1342) in paragraph at lines 988--992 []\T1/ptm/m/n/10 This, the de-fault, has been pro-posed by Mar-tin Maech-ler in 2012, [2458] [2459] [2460] Underfull \hbox (badness 6110) in paragraph at lines 1182--1186 []\T1/ptm/m/n/10 when \T1/zi4/m/sl/10 x \T1/ptm/m/n/10 does not have a \T1/zi4/ m/sl/10 diss \T1/ptm/m/n/10 nor a \T1/zi4/m/sl/10 data \T1/ptm/m/n/10 com-po-ne nt, e.g., for [2461] [2462] [2463] Underfull \hbox (badness 10000) in paragraph at lines 1451--1454 [2464] [2465] Underfull \hbox (badness 2503) in paragraph at lines 1563--1566 []\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/sl/10 "hclust" \T1/ptm/m/n/10 or \T1/zi4/m/sl/10 "twins"\T1/ptm/m/n/10 , i.e., typ-i-cally the re-sult of [2466] [2467] [2468] [2469] [2470] [2471] [2472] [2473] Underfull \hbox (badness 10000) in paragraph at lines 2154--2157 Underfull \hbox (badness 10000) in paragraph at lines 2168--2174 [][][]\T1/zi4/m/sl/10 predict.ellipsoid[][][] \T1/ptm/m/n/10 which is also the [][]\T1/zi4/m/sl/10 predict[][][] \T1/ptm/m/n/10 method for \T1/zi4/m/sl/10 ell ipsoid \T1/ptm/m/n/10 ob-jects. [2474] [2475] [2476] [2477] Underfull \hbox (badness 6675) in paragraph at lines 2403--2405 []\T1/ptm/m/n/10 list with sil-hou-ette in-for-ma-tion of the near-est crisp cl us-ter-ing, see [2478] [2479] [2480] [2481] [2482] [2483] [2484] Underfull \hbox (badness 2980) in paragraph at lines 2871--2875 [][][]\T1/zi4/m/sl/10 agnes[][][] \T1/ptm/m/n/10 for back-ground and ref-er-enc es; [][]\T1/zi4/m/sl/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 cl ara[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 daisy[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/sl/10 partition.object[][][]\T1/ptm/m/n/10 , [2485] [2486] [2487] [2488] [2489] Underfull \hbox (badness 1142) in paragraph at lines 3212--3215 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/sl/10 par[][][]\T1/ ptm/m/n/10 ) may also be sup-plied and are passed to [2490] [2491] Underfull \hbox (badness 1142) in paragraph at lines 3331--3334 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/sl/10 par[][][]\T1/ ptm/m/n/10 ) may also be sup-plied and are passed to [2492] [2493] [2494] [2495] Underfull \hbox (badness 2582) in paragraph at lines 3554--3559 [][][]\T1/zi4/m/sl/10 partition.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 clusplot.partition[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 clusplot.default [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 pam[][][]\T1/ptm/m/n/10 , [][]\T1/zi 4/m/sl/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 clara[][][]\T1/p tm/m/n/10 , [2496] Underfull \hbox (badness 10000) in paragraph at lines 3616--3621 []\T1/ptm/m/n/10 Note that cur-rently the method func-tion sim-ply calls \T1/zi 4/m/sl/10 plot([][]as.hclust[][][](x), ...)\T1/ptm/m/n/10 , Underfull \hbox (badness 4378) in paragraph at lines 3616--3621 \T1/ptm/m/n/10 which dis-patches to [][]\T1/zi4/m/sl/10 plot.hclust[][][](..)\T 1/ptm/m/n/10 . If more flex-i-ble plots are needed, con-sider [2497] [2498] [2499] [2500] Underfull \hbox (badness 10000) in paragraph at lines 3908--3910 []\T1/ptm/m/n/10 a \T1/zi4/m/sl/10 dissimilarity \T1/ptm/m/n/10 ob-ject or a \T 1/zi4/m/sl/10 summary.dissimilarity \T1/ptm/m/n/10 one for [2501] [2502] [2503] [2504] Underfull \hbox (badness 4108) in paragraph at lines 4132--4137 []\T1/ptm/m/n/10 arguments passed [][]\T1/zi4/m/sl/10 barplot[][][]()\T1/ptm/m/ n/10 ; note that the de-fault used to be \T1/zi4/m/sl/10 col [2505] Underfull \hbox (badness 1383) in paragraph at lines 4210--4215 []\T1/ptm/m/n/10 While \T1/zi4/m/sl/10 silhouette() \T1/ptm/m/n/10 is \T1/ptm/m /it/10 in-trin-sic \T1/ptm/m/n/10 to the [][]\T1/zi4/m/sl/10 partition[][][] \T 1/ptm/m/n/10 clus-ter-ings, and hence has a (triv-ial) [2506] [2507] [2508] [2509] [2510] [2511] [2512] Underfull \hbox (badness 10000) in paragraph at lines 4638--4640 []\T1/ptm/m/n/10 Sample data set ac-com-pa-ny-ing the ref-er-ence be-low (file `\T1/zi4/m/sl/10 xclara.dat\T1/ptm/m/n/10 ' in side [2513]) (./codetools-pkg.tex [2514] Chapter 21. [2515] [2516] [2517] [2518] [2519]) (./foreign-pkg.tex [2520] Chapter 22. [2521] [2522] [2523] [2524] [2525] [2526] [2527] [2528] Underfull \hbox (badness 10000) in paragraph at lines 506--515 []\T1/ptm/m/n/10 character: what to do with du-pli-cated value la-bels for dif- fer- Underfull \hbox (badness 10000) in paragraph at lines 506--515 \T1/ptm/m/n/10 ent lev-els. For \T1/zi4/m/sl/10 "append" \T1/ptm/m/n/10 (the de -fault), the first orig-i-nal value Underfull \hbox (badness 10000) in paragraph at lines 506--515 \T1/ptm/m/n/10 la-bel is kept while fur-ther du-pli-cated la-bels are re-named to Underfull \hbox (badness 10000) in paragraph at lines 506--515 \T1/zi4/m/sl/10 paste0(label, duplicated.value.labels.infix, level)\T1/ptm/m/n/ 10 , for Underfull \hbox (badness 1708) in paragraph at lines 506--515 \T1/zi4/m/sl/10 "condense"\T1/ptm/m/n/10 , all lev-els with iden-ti-cal la-bels are con-densed into ex-actly [2529] Overfull \hbox (6.73795pt too wide) in paragraph at lines 625--625 []\T1/zi4/m/n/9 ### Expect lots of warnings as value labels (corresponding to R factor labels) are uncomplete,[] [2530] [2531] [2532] Underfull \hbox (badness 10000) in paragraph at lines 813--814 [2533] [2534] [2535] [2536] [2537] [2538] [2539] Underfull \hbox (badness 10000) in paragraph at lines 1267--1273 []\T1/ptm/m/n/10 The work for this func-tion is done by \T1/zi4/m/sl/10 foreign :::writeForeignStata\T1/ptm/m/n/10 , [2540] [2541]) (./lattice-pkg.tex [2542] Chapter 23. [2543] [2544] [2545] [2546] [2547] [2548] Underfull \hbox (badness 10000) in paragraph at lines 479--484 []\T1/ptm/m/n/10 A po-ten-tially use-ful com-po-nent of \T1/zi4/m/sl/10 scales \T1/ptm/m/n/10 in this case may be Underfull \hbox (badness 1472) in paragraph at lines 479--484 \T1/zi4/m/sl/10 abbreviate = TRUE\T1/ptm/m/n/10 , in which case long la-bels wh ich would usu-ally [2549] [2550] [2551] [2552] [2553] [2554] [2555] [2556] [2557] [2558] Underfull \hbox (badness 1062) in paragraph at lines 1398--1402 \T1/ptm/m/n/10 no-ta-tion for the x and y axes re-spec-tively. See doc-u-men-ta -tion for [2559] Underfull \vbox (badness 4416) has occurred while \output is active [2560] Underfull \hbox (badness 1803) in paragraph at lines 1566--1583 [][][]\T1/zi4/m/sl/10 Lattice[][][] \T1/ptm/m/n/10 for an overview of the pack- age, as well as [][]\T1/zi4/m/sl/10 barchart.table[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/sl/10 print.trellis[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1566--1583 [][]\T1/zi4/m/sl/10 panel.stripplot[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 p anel.superpose[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 panel.loess[][][]\T1/p tm/m/n/10 , [][]\T1/zi4/m/sl/10 panel.average[][][]\T1/ptm/m/n/10 , [][]\T1/zi4 /m/sl/10 strip.default[][][]\T1/ptm/m/n/10 , [2561] [2562] [2563] Underfull \hbox (badness 3009) in paragraph at lines 1725--1727 []\T1/ptm/m/n/10 additional ar-gu-ments passed to [][]\T1/zi4/m/sl/10 xyplot[][ ][]\T1/ptm/m/n/10 , which may pass them on to Underfull \hbox (badness 6808) in paragraph at lines 1755--1759 []\T1/ptm/m/n/10 graphical ar-gu-ments, which are pro-cessed and even-tu-ally p assed to [2564] [2565] [2566] [2567] [2568] Underfull \hbox (badness 10000) in paragraph at lines 2141--2144 []\T1/ptm/m/n/10 When \T1/zi4/m/sl/10 breaks \T1/ptm/m/n/10 is un-spec-i-fied, the value of [2569] [2570] [2571] [2572] Underfull \hbox (badness 7064) in paragraph at lines 2362--2366 []\T1/ptm/m/n/10 For the \T1/zi4/m/sl/10 "formula" \T1/ptm/m/n/10 method, \T1/z i4/m/sl/10 x \T1/ptm/m/n/10 should be a for-mula of the form [2573] [2574] Underfull \hbox (badness 7064) in paragraph at lines 2547--2554 []\T1/ptm/m/n/10 For the \T1/zi4/m/sl/10 "formula" \T1/ptm/m/n/10 method, \T1/z i4/m/sl/10 x \T1/ptm/m/n/10 should be a for-mula of the form [2575] [2576] [2577] [2578] Underfull \hbox (badness 2781) in paragraph at lines 2848--2850 []\T1/ptm/m/n/10 A color ramp spec-i-fi-ca-tion, as in the \T1/zi4/m/sl/10 col. regions \T1/ptm/m/n/10 ar-gu-ment in [2579] Underfull \hbox (badness 2486) in paragraph at lines 2959--2963 []\T1/ptm/m/n/10 Other use-ful ar-gu-ments are men-tioned in the help page for the de-fault panel func-tion [2580] [2581] [2582] Underfull \hbox (badness 10000) in paragraph at lines 3110--3118 []\T1/ptm/m/n/10 For the \T1/zi4/m/sl/10 "formula" \T1/ptm/m/n/10 meth-ods, a f or-mula of the form \T1/zi4/m/sl/10 z ~ x [2583] [2584] [2585] [2586]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.parallel}) has been already used, duplicate ignored \relax l.3431 \aliasA{parallel}{B\_08\_splom}{parallel} [2587] [2588] [2589] [2590] [2591] [2592] [2593] Underfull \hbox (badness 5696) in paragraph at lines 3922--3926 []\T1/ptm/m/n/10 A pos-si-ble use of this ar-gu-ment is to change the de-fault set-tings Underfull \hbox (badness 4647) in paragraph at lines 3922--3926 \T1/ptm/m/n/10 by spec-i-fy-ing \T1/zi4/m/sl/10 lattice.options(default.theme = "col.whitebg")\T1/ptm/m/n/10 . Underfull \hbox (badness 2435) in paragraph at lines 3922--3926 \T1/ptm/m/n/10 For back-compatibility, this is ini-tially (when lat-tice is loa ded) set to [2594] [2595] Underfull \hbox (badness 1173) in paragraph at lines 4061--4065 []\T1/ptm/m/n/10 A char-ac-ter string giv-ing the name of a com-po-nent. If un- spec-i-fied in Underfull \hbox (badness 3219) in paragraph at lines 4088--4090 []\T1/ptm/m/n/10 A log-i-cal flag, in-di-cat-ing whether a warn-ing should be i s-sued when [2596] [2597] [2598] Underfull \hbox (badness 3492) in paragraph at lines 4284--4294 []\T1/ptm/m/n/10 A color spec-i-fi-ca-tion. \T1/zi4/m/sl/10 col \T1/ptm/m/n/10 is used for com-po-nents \T1/zi4/m/sl/10 "plot.symbol"\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4309--4312 []\T1/ptm/m/n/10 fill color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/sl/10 plo t.symbol\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 plot.polygon\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4312--4314 []\T1/ptm/m/n/10 border color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/sl/10 p lot.polygon \T1/ptm/m/n/10 and [2599] [2600] [2601] [2602] [2603] [2604] [2605] [2606] [2607] [2608] Underfull \hbox (badness 6157) in paragraph at lines 5035--5038 []\T1/zi4/m/sl/10 plot.shingle \T1/ptm/m/n/10 dis-plays the ranges of shin-gles via rect-an-gles. \T1/zi4/m/sl/10 print.shingle \T1/ptm/m/n/10 and [2609] [2610] [2611] [2612] [2613] [2614] Underfull \hbox (badness 10000) in paragraph at lines 5486--5489 []\T1/ptm/m/n/10 logical, spec-i-fy-ing whether the la-bels etc should be hor-i -zon-tal. Underfull \hbox (badness 5592) in paragraph at lines 5486--5489 \T1/zi4/m/sl/10 horizontal=FALSE \T1/ptm/m/n/10 is use-ful for strips on the le ft of pan-els us-ing [2615] [2616] [2617] [2618] [2619] Underfull \hbox (badness 4805) in paragraph at lines 5846--5850 []\T1/ptm/m/n/10 logical, whether the view-port be-ing as-signed fo-cus should be high- Underfull \hbox (badness 10000) in paragraph at lines 5857--5864 []\T1/ptm/m/n/10 For \T1/zi4/m/sl/10 panel.identify.qqmath\T1/ptm/m/n/10 , ex-t ra pa-ram-e-ters are passed on to Underfull \hbox (badness 1226) in paragraph at lines 5857--5864 \T1/zi4/m/sl/10 panel.identify\T1/ptm/m/n/10 . For \T1/zi4/m/sl/10 panel.identi fy\T1/ptm/m/n/10 , ex-tra ar-gu-ments are treated as Underfull \hbox (badness 2418) in paragraph at lines 5857--5864 \T1/ptm/m/n/10 graph-i-cal pa-ram-e-ters and are used for la-belling. For \T1/z i4/m/sl/10 trellis.focus Underfull \hbox (badness 10000) in paragraph at lines 5857--5864 \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 trellis.switchFocus\T1/ptm/m/n/10 , these ar e used (in com-bi-na-tion with Underfull \hbox (badness 1259) in paragraph at lines 5857--5864 [][]\T1/zi4/m/sl/10 lattice.options[][][]\T1/ptm/m/n/10 ) for high-light-ing th e cho-sen view-port if so re-quested. [2620] [2621] [2622] [2623] Underfull \hbox (badness 4242) in paragraph at lines 6157--6162 []\T1/ptm/m/n/10 Graphical pa-ram-e-ters for the bars. By de-fault, the trel-li s pa-ram-e- Underfull \hbox (badness 2529) in paragraph at lines 6157--6162 \T1/ptm/m/n/10 ter \T1/zi4/m/sl/10 plot.polygon \T1/ptm/m/n/10 is used if there is no group-ing vari-able, oth-er-wise [2624] [2625] Underfull \hbox (badness 2310) in paragraph at lines 6273--6278 []\T1/ptm/m/n/10 Creates Box and Whisker plot of \T1/zi4/m/sl/10 x \T1/ptm/m/n/ 10 for ev-ery level of \T1/zi4/m/sl/10 y \T1/ptm/m/n/10 (or the other way round if [2626] [2627] [2628] [2629] [2630] [2631] [2632] [2633] [2634] [2635] [2636] Underfull \hbox (badness 3168) in paragraph at lines 7055--7059 \T1/ptm/m/n/10 to know what ar-gu-ments this func-tion is passed when called. U se [2637] [2638] [2639] [2640] Underfull \hbox (badness 2012) in paragraph at lines 7326--7329 []\T1/ptm/m/n/10 Further ar-gu-ments, of-ten graph-i-cal pa-ram-e-ters, even-tu -ally passed on to [2641] [2642] Underfull \hbox (badness 3333) in paragraph at lines 7498--7500 []\T1/ptm/m/n/10 default colours are ob-tained from \T1/zi4/m/sl/10 plot.symbol \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 plot.line \T1/ptm/m/n/10 us-ing [2643] [2644] [2645] Underfull \vbox (badness 10000) has occurred while \output is active [2646] [2647] [2648] Underfull \hbox (badness 1436) in paragraph at lines 7912--7918 []\T1/ptm/m/n/10 A log-i-cal flag de-ter-min-ing whether the de-fault graph-i-c al pa-ram-e-ters for Underfull \hbox (badness 1661) in paragraph at lines 7912--7918 \T1/zi4/m/sl/10 panel.abline \T1/ptm/m/n/10 should be taken from the ``ref-er-e nce.line'' pa-ram-e-ter set- Underfull \hbox (badness 1231) in paragraph at lines 7912--7918 \T1/ptm/m/n/10 tings. The de-fault is to take them from the ``add.line'' set-ti ngs. The [2649] [2650] [2651] [2652] [2653] [2654] [2655] [2656] Underfull \hbox (badness 10000) in paragraph at lines 8470--8473 []\T1/ptm/m/n/10 Extra ar-gu-ments. Passed down to \T1/zi4/m/sl/10 panel.superp ose \T1/ptm/m/n/10 from [2657] Underfull \hbox (badness 1092) in paragraph at lines 8516--8518 []\T1/ptm/m/n/10 Deepayan Sarkar \T1/zi4/m/sl/10 \T1/ptm/m/n/10 (\T1/zi4/m/sl/10 panel.superpose.2 \T1/ptm/m/n/10 orig-i-nally con- [2658] [2659] Underfull \hbox (badness 3895) in paragraph at lines 8677--8680 []\T1/ptm/m/n/10 details of his-togram cal-cu-la-tions. \T1/zi4/m/sl/10 type \T 1/ptm/m/n/10 has a dif-fer-ent mean-ing in [2660] Underfull \hbox (badness 1515) in paragraph at lines 8753--8757 []\T1/ptm/m/n/10 numeric vec-tor of length two, rep-re-sent-ing prob-a-bil-i-ti es. If used with [2661] [2662] Underfull \hbox (badness 6316) in paragraph at lines 8859--8864 []\T1/ptm/m/n/10 which packet (counted ac-cord-ing to the packet or-der, de-scr ibed in Underfull \hbox (badness 5908) in paragraph at lines 8876--8879 []\T1/ptm/m/n/10 list, sim-i-lar to those pro-duced by \T1/zi4/m/sl/10 xscale.c omponents.default \T1/ptm/m/n/10 and [2663] [2664] [2665] [2666] Overfull \hbox (25.25827pt too wide) in paragraph at lines 9164--9168 []\T1/ptm/m/n/10 returns a list with sev-eral com-po-nents, in-clud-ing \T1/zi4 /m/sl/10 left, right, left.name, right.name, condition Overfull \hbox (14.60007pt too wide) in paragraph at lines 9164--9168 \T1/ptm/m/n/10 for 2-D, and \T1/zi4/m/sl/10 left, right.x, right.y, left.nam e, right.x.name, right.y.name, condition [2667] [2668] [2669] [2670] [2671] [2672] [2673] [2674] [2675] [2676]pdfTeX war ning (ext4): destination with the same identifier (name{Rfn.melanoma}) has been already used, duplicate ignored \relax l.9853 \aliasA{melanoma}{H\_melanoma}{melanoma} [2677] [2678] [2679] Underfull \hbox (badness 4144) in paragraph at lines 10077--10080 []\T1/ptm/m/n/10 Rural Health Re-form Pol-icy Re-search Cen-ter. _Ex-plor-ing R u-ral and Ur-ban Mor-tal- Underfull \hbox (badness 1509) in paragraph at lines 10077--10080 \T1/ptm/m/n/10 ity Dif-fer-ences_, Au-gust 2015 Bethesda, MD. [][]$\T1/zi4/m/sl /10 https : / / ruralhealth . und . edu / projects / [2680] [2681]) (./mgcv-pkg.tex [2682] Chapter 24. [2683] [2684] [2685] Underfull \hbox (badness 1142) in paragraph at lines 171--175 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from Underfull \hbox (badness 1043) in paragraph at lines 196--201 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2686] [2687] [2688] Underfull \hbox (badness 10000) in paragraph at lines 358--365 [][][]\T1/zi4/m/sl/10 mgcv.parallel[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 m gcv-package[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gamObject[][][]\T1/ptm/m/ n/10 , [][]\T1/zi4/m/sl/10 gam.models[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 smooth.terms[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 7168) in paragraph at lines 358--365 [][]\T1/zi4/m/sl/10 linear.functional.terms[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m /sl/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 te[][][] [][]predict.gam[][] []\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.gam[][][]\T1/ptm/m/n/10 , [][]\T1/z i4/m/sl/10 summary.gam[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gam.side[][][] \T1/ptm/m/n/10 , [2689] [2690] [2691] [2692] [2693] [2694] Underfull \hbox (badness 1158) in paragraph at lines 665--667 []\T1/ptm/m/n/10 Choosing the ba-sis di-men-sion, and check-ing the choice, whe n us-ing pe-nal-ized re-gres-sion [2695] Underfull \hbox (badness 1259) in paragraph at lines 728--729 []\T1/ptm/m/n/10 Wood, S.N. (2017) Gen-er-al-ized Ad-di-tive Mod-els: An In-tro -duc-tion with R (2nd edi-tion). [2696] Underfull \vbox (badness 10000) has occurred while \output is active [2697] [2698] [2699] [2700] [2701] [2702] [2703] [2704] [2705] [2706] [2707] [2708] [2709] [2710] [2711] [2712] [2713] [2714] Underfull \vbox (badness 5681) has occurred while \output is active [2715] [2716] [2717] [2718] [2719] Underfull \hbox (badness 1142) in paragraph at lines 2102--2106 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from Underfull \hbox (badness 1043) in paragraph at lines 2128--2133 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2720] [2721] [2722] [2723] [2724] [2725] Underfull \vbox (badness 10000) has occurred while \output is active [2726] Underfull \vbox (badness 10000) has occurred while \output is active [2727] [2728] [2729] [2730] [2731] [2732] [2733] [2734] [2735] [2736] [2737] [2738] [2739] [2740] [2741] Underfull \hbox (badness 10000) in paragraph at lines 3436--3440 []\T1/ptm/m/n/10 Random ef-fects can be added to \T1/zi4/m/sl/10 gam \T1/ptm/m/ n/10 mod-els us-ing \T1/zi4/m/sl/10 s(...,bs="re") \T1/ptm/m/n/10 terms (see [2742] Underfull \vbox (badness 10000) has occurred while \output is active [2743] Underfull \vbox (badness 10000) has occurred while \output is active [2744] [2745] Underfull \hbox (badness 1184) in paragraph at lines 3722--3726 []\T1/ptm/m/n/10 list of the square root penal-ties: last en-try is root of fix ed penalty, if [2746] [2747] [2748] [2749] [2750] [2751] [2752] [2753] [2754] [2755] [2756] [2757] Underfull \hbox (badness 1142) in paragraph at lines 4443--4447 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2758] [2759] Underfull \hbox (badness 1231) in paragraph at lines 4544--4546 []\T1/zi4/m/sl/10 gamm \T1/ptm/m/n/10 per-forms poorly with bi-nary data, since it uses PQL. It is bet-ter to use \T1/zi4/m/sl/10 gam \T1/ptm/m/n/10 with [2760] [2761] Underfull \vbox (badness 10000) has occurred while \output is active [2762] [2763] [2764] Underfull \hbox (badness 2181) in paragraph at lines 4916--4917 []\T1/ptm/m/n/10 one sided for-mula con-tain-ing vari-ables needed for pre-dic- tion, used by [2765] [2766] [2767] [2768] [2769] [2770] [2771] [2772] [2773] [2774] [2775] [2776] [2777] Underfull \hbox (badness 1142) in paragraph at lines 5658--5662 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2778] [2779] [2780] [2781] [2782] [2783] Underfull \hbox (badness 1087) in paragraph at lines 5952--5953 []\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 rho \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 thet a \T1/ptm/m/n/10 were sup-plied then deriva-tives are w.r.t. these. In this cas e, and if [2784] [2785] Underfull \vbox (badness 10000) has occurred while \output is active [2786] [2787] [2788] [2789] [2790] [2791] [2792] [2793] [2794] [2795] Underfull \vbox (badness 4805) has occurred while \output is active [2796] [2797] Underfull \hbox (badness 1242) in paragraph at lines 6848--6849 []\T1/ptm/m/n/10 Development of mgcv ver-sion 1.8 was part funded by EP-SRC gra nts EP/K005251/1 and [2798] [2799] [2800] [2801] Underfull \vbox (badness 10000) has occurred while \output is active [2802] [2803] [2804] [2805] [2806] [2807] [2808] [2809] Underfull \hbox (badness 6001) in paragraph at lines 7488--7490 []\T1/ptm/m/n/10 Simon N. Wood \T1/zi4/m/sl/10 \T1/p tm/m/n/10 mod-i-fied from Ven-ables and Rip-ley's [2810] [2811] [2812] [2813] [2814] [2815] [2816] [2817] [2818] [2819] Underfull \vbox (badness 10000) has occurred while \output is active [2820] [2821] Underfull \hbox (badness 1038) in paragraph at lines 8237--8240 []\T1/ptm/m/n/10 The fol-low-ing func-tions are pro-vided: \T1/zi4/m/sl/10 Dim. pdIndot\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 coef.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/ sl/10 corMatrix.pdIdnot\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 8237--8240 \T1/zi4/m/sl/10 logDet.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdConstruct.pdId not\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdFactor.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/ sl/10 pdMatrix.pdIdnot\T1/ptm/m/n/10 , [2822] Underfull \hbox (badness 10000) in paragraph at lines 8293--8296 []\T1/ptm/m/n/10 These func-tions (\T1/zi4/m/sl/10 pdTens\T1/ptm/m/n/10 , \T1/z i4/m/sl/10 pdConstruct.pdTens\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdFactor.pdTens\T 1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdMatrix.pdTens\T1/ptm/m/n/10 , [2823] [2824] [2825] [2826] [2827] [2828] [2829] [2830] [2831] [2832] [2833] Underfull \hbox (badness 1852) in paragraph at lines 8961--8964 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/sl/10 termplot[] [][]\T1/ptm/m/n/10 , if \T1/zi4/m/sl/10 object \T1/ptm/m/n/10 pos-sesses an at- tribute \T1/zi4/m/sl/10 "para.only" \T1/ptm/m/n/10 and [2834] [2835] Underfull \hbox (badness 1852) in paragraph at lines 9123--9126 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/sl/10 termplot[] [][]\T1/ptm/m/n/10 , if \T1/zi4/m/sl/10 object \T1/ptm/m/n/10 pos-sesses an at- tribute \T1/zi4/m/sl/10 "para.only" \T1/ptm/m/n/10 and [2836] [2837] Underfull \vbox (badness 10000) has occurred while \output is active [2838] Underfull \vbox (badness 10000) has occurred while \output is active [2839] Underfull \hbox (badness 1205) in paragraph at lines 9350--9352 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 9350--9352 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for Underfull \hbox (badness 1975) in paragraph at lines 9356--9361 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [2840] Underfull \hbox (badness 1205) in paragraph at lines 9440--9442 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 9440--9442 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for [2841] [2842] [2843] [2844] Underfull \hbox (badness 1253) in paragraph at lines 9639--9641 []\T1/ptm/m/n/10 Note that the op-ti-mized smooth-ing pa-ram-e-ter se-lec-tion cri-te-rion re-ported is one of GCV, [2845] [2846] [2847] Underfull \hbox (badness 4792) in paragraph at lines 9825--9828 []\T1/ptm/m/n/10 Alternatively, but less straight-for-wardly, the \T1/zi4/m/sl/ 10 paraPen \T1/ptm/m/n/10 ar-gu-ment to [][]\T1/zi4/m/sl/10 gam[][][] \T1/ptm/m /n/10 can be used: Underfull \hbox (badness 10000) in paragraph at lines 9825--9828 \T1/ptm/m/n/10 see [][]\T1/zi4/m/sl/10 gam.models[][][]\T1/ptm/m/n/10 . If smoo th-ing pa-ram-e-ter es-ti-ma-tion is by ML or REML (e.g. [2848] [2849] Underfull \hbox (badness 10000) in paragraph at lines 9920--9923 []\T1/ptm/m/n/10 the type of resid-u-als wanted. Usu-ally one of \T1/zi4/m/sl/1 0 "deviance"\T1/ptm/m/n/10 , [2850] [2851] [2852] [2853] [2854] [2855] [2856] [2857] [2858] [2859] Underfull \vbox (badness 10000) has occurred while \output is active [2860] Underfull \hbox (badness 3861) in paragraph at lines 10548--10551 []\T1/ptm/m/n/10 INTERNAL rou-tine to ap-ply ini-tial Sl re-parameterization to model ma-trix X, or, if [2861] [2862] Underfull \hbox (badness 5681) in paragraph at lines 10654--10659 \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 b.orig = D*b.repara \T1/ptm/m/n/10 (where \T 1/zi4/m/sl/10 b.orig \T1/ptm/m/n/10 is the orig-i-nal pa-ram-e-ter vec-tor). Underfull \hbox (badness 2762) in paragraph at lines 10654--10659 \T1/ptm/m/n/10 If ma-trix then \T1/zi4/m/sl/10 X[,start:stop]%*%D \T1/ptm/m/n/1 0 is re-parametrization of \T1/zi4/m/sl/10 X[,start:stop]\T1/ptm/m/n/10 , and [2863] Underfull \hbox (badness 1975) in paragraph at lines 10760--10765 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [2864] [2865] Underfull \hbox (badness 1762) in paragraph at lines 10849--10861 \T1/ptm/m/n/10 plate re-gres-sion splines: see [][]\T1/zi4/m/sl/10 tprs[][][]\T 1/ptm/m/n/10 ); \T1/zi4/m/sl/10 ts.smooth.spec \T1/ptm/m/n/10 (thin plate re-gr es-sion splines with [2866] [2867] [2868] Underfull \hbox (badness 7667) in paragraph at lines 11061--11067 [][][]\T1/zi4/m/sl/10 gam[][][] \T1/ptm/m/n/10 can use adap-tive smooths of one or two vari-ables, spec-i-fied via terms like [2869] Underfull \hbox (badness 10000) in paragraph at lines 11102--11103 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2870] [2871] [2872] [2873] Underfull \vbox (badness 10000) has occurred while \output is active [2874] Underfull \hbox (badness 10000) in paragraph at lines 11379--11381 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2875] [2876] Underfull \hbox (badness 10000) in paragraph at lines 11507--11508 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2877] [2878] [2879] Underfull \hbox (badness 1436) in paragraph at lines 11645--11650 \T1/ptm/m/n/10 nest-ing of the smooth within the fac-tor. Note how-ever that: i ) \T1/zi4/m/sl/10 gamm \T1/ptm/m/n/10 only al-lows one [2880] [2881] Underfull \hbox (badness 10000) in paragraph at lines 11736--11737 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2882] [2883] [2884] [2885] [2886] [2887] Underfull \vbox (badness 10000) has occurred while \output is active [2888] [2889] [2890] Underfull \hbox (badness 10000) in paragraph at lines 12304--12310 []\T1/ptm/m/n/10 A smooth spec-i-fi-ca-tion ob-ject as pro-duced by a [2891] [2892] [2893] Underfull \vbox (badness 10000) has occurred while \output is active [2894] Underfull \vbox (badness 10000) has occurred while \output is active [2895] [2896] Underfull \hbox (badness 10000) in paragraph at lines 12647--12648 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2897] [2898] [2899] [2900] Underfull \hbox (badness 3895) in paragraph at lines 12908--12911 [][][]\T1/zi4/m/sl/10 gam[][][] \T1/ptm/m/n/10 can use isotropic smooths of any num-ber of vari-ables, spec-i-fied via terms like [2901] Underfull \hbox (badness 10000) in paragraph at lines 12953--12955 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2902] [2903] [2904] [2905] Underfull \hbox (badness 1371) in paragraph at lines 13170--13176 []\T1/zi4/m/sl/10 bs="ad" \T1/ptm/m/n/10 Uni-vari-ate and bi-vari-ate adap-tive smooths are avail-able (see Underfull \hbox (badness 10000) in paragraph at lines 13210--13214 [][][]\T1/zi4/m/sl/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 te[][][]\T1/p tm/m/n/10 , [][]\T1/zi4/m/sl/10 t2[][][] [][]tprs[][][]\T1/ptm/m/n/10 ,[][]\T1/ zi4/m/sl/10 Duchon.spline[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 cubic.regre ssion.spline[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/sl/10 p.spline[][][]\T1/ptm/m/n /10 , Underfull \hbox (badness 10000) in paragraph at lines 13210--13214 [][]\T1/zi4/m/sl/10 mrf[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 soap[][][]\T1 /ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Spherical.Spline[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/sl/10 adaptive.smooth[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 user.de fined.smooth[][][]\T1/ptm/m/n/10 , Overfull \hbox (46.8009pt too wide) in paragraph at lines 13210--13214 [][]\T1/zi4/m/sl/10 smooth.construct.re.smooth.spec[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/sl/10 smooth.construct.gp.smooth.spec[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4 /m/sl/10 factor.smooth.interaction[][][] [2906] [2907] [2908] Underfull \hbox (badness 2326) in paragraph at lines 13366--13373 []\T1/ptm/m/n/10 These wrap-per func-tions ex-ist to al-low smooths spec-i-fied us-ing [][]\T1/zi4/m/sl/10 smooth.construct[][][] \T1/ptm/m/n/10 and [2909] Underfull \hbox (badness 2158) in paragraph at lines 13451--13451 []\T1/ptm/m/it/10 Extract smooth-ing pa-ram-e-ter es-ti-ma-tor co-vari-ance ma- trix from [2910] [2911] [2912] [2913] [2914] [2915] [2916] [2917] [2918] [2919] [2920] [2921] [2922] [2923] [2924] [2925] [2926] [2927] [2928] Underfull \hbox (badness 10000) in paragraph at lines 14616--14624 []\T1/ptm/m/n/10 Suppose that \T1/zi4/m/sl/10 m=1 \T1/ptm/m/n/10 and you fill a n ar-ray us-ing code like Underfull \hbox (badness 10000) in paragraph at lines 14616--14624 \T1/zi4/m/sl/10 for(i in 1:K) for(j in i:K) for(k in j:K) for(l in k:K) [2929] [2930] [2931] [2932] [2933] [2934] [2935] Underfull \hbox (badness 1796) in paragraph at lines 14999--15002 []\T1/ptm/m/n/10 other op-tions to pass on to [][]\T1/zi4/m/sl/10 persp[][][]\T 1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 image[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/ sl/10 contour[][][]\T1/ptm/m/n/10 . In par-tic-u-lar [2936] [2937] [2938] [2939] [2940] [2941]) (./nlme-pkg.tex [2942] Chapter 25. [2943] [2944] [2945] [2946] [2947] [2948] [2949] [2950] [2951] [2952] [2953] [2954] [2955] [2956] [2957] [2958] [2959] [2960] [2961] [2962] [2963] [2964] [2965] [2966] [2967] [2968] [2969] [2970] [2971] [2972] Underfull \hbox (badness 2875) in paragraph at lines 1994--2000 []\T1/ptm/m/n/10 an op-tional log-i-cal value or one-sided for-mula, in-di-cat- ing a co-vari-ate Underfull \hbox (badness 1466) in paragraph at lines 1994--2000 \T1/ptm/m/n/10 that is in-ner to the \T1/zi4/m/sl/10 displayLevel \T1/ptm/m/n/1 0 group-ing fac-tor. If equal to \T1/zi4/m/sl/10 TRUE\T1/ptm/m/n/10 , [2973] [2974] [2975] [2976] Underfull \hbox (badness 10000) in paragraph at lines 2255--2261 [][][]\T1/zi4/m/sl/10 ACF.lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 corARMA [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 corClasses[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/sl/10 Dim.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Initi alize.corStruct[][][]\T1/ptm/m/n/10 , [2977] [2978] [2979] [2980] [2981] [2982] [2983] [2984] [2985] [2986] [2987] [2988] [2989] [2990] [2991] [2992] [2993] [2994] [2995] [2996] [2997] [2998] [2999] [3000] [3001] [3002] [3003] [3004] [3005] [3006] [3007] [3008] [3009] Underfull \hbox (badness 1067) in paragraph at lines 4413--4418 \T1/ptm/m/n/10 ma-trix), \T1/zi4/m/sl/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues ), and \T1/zi4/m/sl/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to [3010] [3011] [3012] [3013] [3014] [3015] [3016] [3017] [3018] [3019] [3020] [3021] Underfull \hbox (badness 10000) in paragraph at lines 5159--5163 [][][]\T1/zi4/m/sl/10 getCovariate.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/ m/sl/10 getCovariate.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getCo variate.varFunc[][][]\T1/ptm/m/n/10 , [3022] [3023] [3024] [3025] [3026] [3027] [3028] Underfull \hbox (badness 10000) in paragraph at lines 5591--5594 [][][]\T1/zi4/m/sl/10 getGroupsFormula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 getGroups.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getGroups.gls[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getGroups.lmList[][][]\T1/ptm/m/n/10 , [3029] [3030] [3031] [3032] [3033] [3034] [3035] Underfull \hbox (badness 10000) in paragraph at lines 5972--5977 [][][]\T1/zi4/m/sl/10 getGroupsFormula.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/ sl/10 getGroupsFormula.lmList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getGrou psFormula.lme[][][]\T1/ptm/m/n/10 , [3036] [3037] [3038] [3039] Underfull \hbox (badness 1490) in paragraph at lines 6242--6253 [][][]\T1/zi4/m/sl/10 corClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 glsC ontrol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 glsObject[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot. gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 predict.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 qqnorm.gls[][][]\T1/ptm/m/n/10 , [3040] Underfull \hbox (badness 10000) in paragraph at lines 6306--6308 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3041] [3042] [3043] [3044] [3045] [3046] Underfull \hbox (badness 10000) in paragraph at lines 6720--6722 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3047] [3048] [3049] [3050] Underfull \hbox (badness 10000) in paragraph at lines 6993--7000 [][][]\T1/zi4/m/sl/10 formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gapply[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gsummary[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/sl/10 lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.nffGroupedData [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.nfnGroupedData[][][]\T1/ptm/m/n /10 , [3051] [3052] [3053] [3054] Underfull \hbox (badness 10000) in paragraph at lines 7255--7260 [][][]\T1/zi4/m/sl/10 Initialize.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/ sl/10 Initialize.lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Initialize .glsStruct[][][]\T1/ptm/m/n/10 , [3055] [3056] [3057] [3058] [3059] [3060] [3061] [3062] [3063] [3064] [3065] [3066] Underfull \hbox (badness 1642) in paragraph at lines 8037--8059 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a one-sided for-mula o f the form [3067] [3068] Underfull \hbox (badness 1642) in paragraph at lines 8209--8231 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a one-sided for-mula o f the form [3069] [3070] [3071] [3072] [3073] Underfull \hbox (badness 10000) in paragraph at lines 8520--8522 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3074]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.sig ma}) has been already used, duplicate ignored \relax l.8565 \aliasA{sigma}{lmeObject}{sigma} [3075] [3076] [3077] [3078] Underfull \hbox (badness 10000) in paragraph at lines 8795--8802 [][][]\T1/zi4/m/sl/10 lm[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 lme.lmList[] [][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.lmList[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/sl/10 pooledSD[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 predict.lmLi st[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 residuals.lmList[][][]\T1/ptm/m/n/ 10 , [3079] [3080] [3081] [3082] [3083] [3084] [3085] [3086] Underfull \hbox (badness 10000) in paragraph at lines 9317--9324 [][][]\T1/zi4/m/sl/10 lme[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/sl/10 gls[][][]\T1 /ptm/m/n/10 , [][]\T1/zi4/m/sl/10 logLik.corStruct[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/sl/10 logLik.glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 logLik .lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 logLik.lmList[][][]\T1/ptm /m/n/10 , [3087] [3088] [3089] [3090] [3091]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.Matrix}) has been already used, duplicate ignored \relax l.9679 ...rA{Matrix}{Assign Matrix Values}{Matrix} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.Matrix.1}) has been already used, dupl icate ignored \relax l.9679 ...rA{Matrix}{Assign Matrix Values}{Matrix} [3092] [3093] [3094] [3095] [3096] [3097] [3098] [3099] [3100] [3101] [3102] [3103] Underfull \hbox (badness 1596) in paragraph at lines 10452--10478 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a two-sided for-mula o f the form [3104] [3105] Underfull \hbox (badness 1490) in paragraph at lines 10590--10596 [][][]\T1/zi4/m/sl/10 nlmeControl[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 nlm e.nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 nlmeObject[][][]\T1/ptm/m/n /10 , [][]\T1/zi4/m/sl/10 nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 nlm eStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 pdClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 reStruct[][][]\T1/ptm/m/n/10 , [3106] [3107] [3108] [3109] Underfull \hbox (badness 10000) in paragraph at lines 10812--10816 []\T1/ptm/m/n/10 a log-i-cal value passed as the \T1/zi4/m/sl/10 trace \T1/ptm/ m/n/10 to Underfull \hbox (badness 10000) in paragraph at lines 10831--10833 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3110] [3111] [3112] [3113] [3114] [3115] [3116] [3117] [3118] [3119] [3120] [3121] [3122] [3123] [3124] [3125] [3126] [3127] [3128] [3129] [3130] [3131] [3132] [3133] [3134] [3135] [3136] [3137] [3138] [3139] [3140] [3141] [3142] [3143] [3144] [3145] [3146] [3147] [3148] [3149] [3150] [3151] Underfull \hbox (badness 1286) in paragraph at lines 13728--13735 []\T1/ptm/m/n/10 an op-tional log-i-cal func-tion or func-tion. If \T1/zi4/m/sl /10 TRUE \T1/ptm/m/n/10 and ei-ther \T1/zi4/m/sl/10 inner \T1/ptm/m/n/10 or [3152] [3153] [3154] [3155] [3156] [3157] [3158] [3159] Underfull \hbox (badness 1215) in paragraph at lines 14256--14258 []\T1/ptm/m/n/10 an op-tional nu-meric vec-tor with the lim-its for the y-axis. De-faults to [3160] [3161] [3162] [3163] [3164] [3165] [3166] [3167] [3168] [3169] [3170] [3171] [3172]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.random.effects}) has been already used, duplicate ignored \relax l.15153 ...Extract Random Effects}{random.effects} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.random.effects.1}) has been already us ed, duplicate ignored \relax l.15153 ...Extract Random Effects}{random.effects} [3173] [3174] [3175] [3176] [3177] [3178] [3179] [3180] [3181] [3182] [3183] Underfull \hbox (badness 1067) in paragraph at lines 15864--15869 \T1/ptm/m/n/10 ma-trix), \T1/zi4/m/sl/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues ), and \T1/zi4/m/sl/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to [3184] [3185] [3186] [3187] Underfull \hbox (badness 1448) in paragraph at lines 16107--16116 \T1/ptm/m/n/10 Op-tions in-clude \T1/zi4/m/sl/10 "response" \T1/ptm/m/n/10 for the "raw" resid-u-als (ob-served - fit-ted), [3188] [3189] Underfull \hbox (badness 10000) in paragraph at lines 16235--16253 []\T1/ptm/m/n/10 any of the fol-low-ing: (i) a one-sided for-mula of the form Underfull \hbox (badness 1721) in paragraph at lines 16235--16253 \T1/zi4/m/sl/10 ~x1+...+xn | g1/.../gm\T1/ptm/m/n/10 , with \T1/zi4/m/sl/10 x1+ ...+xn \T1/ptm/m/n/10 spec-i-fy-ing the model for [3190] [3191] [3192] [3193] [3194] [3195] [3196] [3197] Underfull \hbox (badness 1728) in paragraph at lines 16812--16815 []\T1/ptm/m/n/10 an op-tional log-i-cal value used to con-trol the amount of ou t-put in the [3198] [3199] [3200] [3201] [3202] Underfull \hbox (badness 10000) in paragraph at lines 17147--17156 []\T1/ptm/m/n/10 an op-tional char-ac-ter string with a de-scrip-tion of the \T 1/zi4/m/sl/10 pdMat Underfull \hbox (badness 6725) in paragraph at lines 17147--17156 \T1/ptm/m/n/10 class. De-fault de-pends on the method func-tion: \T1/zi4/m/sl/1 0 "Blocked" \T1/ptm/m/n/10 for Underfull \hbox (badness 10000) in paragraph at lines 17147--17156 \T1/zi4/m/sl/10 pdBlocked\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "Compound Symmetry" \ T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdCompSymm\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "D iagonal" Underfull \hbox (badness 10000) in paragraph at lines 17147--17156 \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdDiag\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "Mult iple of an Identity" \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdIdent\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 17147--17156 \T1/zi4/m/sl/10 "General Positive-Definite, Natural Parametrization" Underfull \hbox (badness 10000) in paragraph at lines 17147--17156 \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdNatural\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "G eneral Positive-Definite" \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdSymm\T1/ptm/m/n/ 10 , and [3203] Underfull \hbox (badness 10000) in paragraph at lines 17211--17219 \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 varComb\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "Con stant plus power of covariate" \T1/ptm/m/n/10 for Underfull \hbox (badness 3815) in paragraph at lines 17211--17219 \T1/zi4/m/sl/10 "Different standard deviations per stratum" \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 varIdent\T1/ptm/m/n/10 , [3204] [3205] [3206] [3207] [3208] [3209] [3210] [3211] [3212] [3213] [3214] Underfull \hbox (badness 10000) in paragraph at lines 17993--18003 [][][]\T1/zi4/m/sl/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 Variogram.corGaus[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.corLin[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.corRatio[][][]\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 17993--18003 [][]\T1/zi4/m/sl/10 Variogram.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl /10 Variogram.corSpher[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.defa ult[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.gls[][][]\T1/ptm/m/n/10 , [3215] [3216] [3217] [3218] [3219] Underfull \hbox (badness 5036) in paragraph at lines 18317--18326 [][][]\T1/zi4/m/sl/10 corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Vari ogram[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.default[][][]\T1/ptm/ m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4 /m/sl/10 Variogram.corGaus[][][]\T1/ptm/m/n/10 , [3220] [3221] [3222] [3223] [3224] [3225] [3226] [3227] [3228] [3229] [3230] [3231] [3232]) (./nnet-pkg.tex Chapter 26. pdfTeX warning (ext4): destination with the same identifier (name{Rfn.multinom} ) has been already used, duplicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.multinom.1}) has been already used, du plicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} [3233] Underfull \hbox (badness 10000) in paragraph at lines 78--87 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm [3234] [3235] [3236] [3237] [3238] [3239] [3240]) (./rpart-pkg.tex Chapter 27. [3241] [3242] [3243] [3244] [3245] [3246] [3247] [3248] [3249] [3250] [3251] [3252] [3253] [3254] [3255] [3256] [3257] [3258] [3259] [3260] [3261] [3262] [3263] [3264] [3265] [3266] [3267] [3268] [3269]) (./spatial-pkg.tex [3270] Chapter 28. [3271] [3272] [3273] [3274] [3275] [3276] Underfull \hbox (badness 10000) in paragraph at lines 423--427 [3277] [3278] [3279] [3280] [3281] [3282] [3283] [3284] [3285] [3286] [3287] [3288] [3289]) (./survival-pkg.tex [3290] Chapter 29. [3291] [3292] [3293] [3294]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.aml}) has been already used, duplicate ignored \relax l.319 ... Myelogenous Leukemia survival data}{aml} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.aml.1}) has been already used, duplica te ignored \relax l.319 ... Myelogenous Leukemia survival data}{aml} [3295] [3296] [3297] [3298] [3299] Underfull \vbox (badness 10000) has occurred while \output is active [3300] [3301] [3302] [3303] [3304] [3305] Underfull \hbox (badness 1097) in paragraph at lines 968--970 []\T1/ptm/m/n/10 F.J. Anscombe (1949). Trans-for-ma-tions of Pois-son, bi-no-mi al and negative-binomial data. [3306] [3307] [3308]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colon}) has been already used, duplicate ignored \relax l.1171 ...erapy for Stage B/C colon cancer}{colon} Underfull \vbox (badness 2698) has occurred while \output is active [3309] [3310] [3311] [3312] [3313] [3314] [3315] [3316] [3317] [3318] [3319] [3320] [3321] [3322] [3323] [3324] [3325] [3326] [3327] Underfull \hbox (badness 1389) in paragraph at lines 2567--2569 []\T1/ptm/m/n/10 Often used to add the ex-pected sur-vival curve(s) to a Kaplan -Meier plot gen-er-ated with [3328] Underfull \hbox (badness 1048) in paragraph at lines 2621--2623 []\T1/ptm/m/n/10 this pa-ram-e-ter is no longer nec-es-sary and is ig-nored. Se e the note in [3329] [3330] [3331] [3332] [3333] [3334] [3335] [3336] [3337] [3338] [3339] [3340] [3341] Underfull \vbox (badness 10000) has occurred while \output is active [3342] [3343] [3344] [3345] [3346] [3347] [3348] [3349] [3350] [3351] Underfull \hbox (badness 5274) in paragraph at lines 4163--4165 []\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/sl/10 "summary.survfit"\T1/ptm/m /n/10 , which is the re-sult of the [3352] [3353] [3354] [3355] [3356] [3357] Underfull \hbox (badness 1540) in paragraph at lines 4517--4520 []\T1/ptm/m/n/10 an ar-ray con-tain-ing the ex-pected num-ber of events (or per -son years if [3358] [3359] [3360] [3361] Underfull \vbox (badness 10000) has occurred while \output is active [3362] [3363] [3364] Underfull \hbox (badness 1281) in paragraph at lines 5029--5034 []\T1/ptm/m/n/10 type of resid-u-als, with choices of \T1/zi4/m/sl/10 "response "\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "deviance"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "d fbeta"\T1/ptm/m/n/10 , [3365] [3366] [3367] [3368] [3369] [3370] [3371] [3372] [3373] [3374] [3375] [3376] [3377] [3378] [3379] [3380] [3381] [3382] Underfull \hbox (badness 10000) in paragraph at lines 6255--6264 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for other sur-vival mod-els, of the form [3383] [3384] Underfull \hbox (badness 1038) in paragraph at lines 6407--6413 \T1/ptm/m/n/10 op-tion does not cre-ate a curve, rather it re-trieves the pre-d icted sur-vival [3385] [3386] [3387] [3388] [3389] Underfull \hbox (badness 10000) in paragraph at lines 6770--6775 [][][]\T1/zi4/m/sl/10 survfit.formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 survfit.coxph[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 survfit.object[][][]\T 1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 print.survfit[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/sl/10 plot.survfit[][][]\T1/ptm/m/n/10 , [3390] [3391] [3392] [3393] [3394] [3395] [3396] [3397] [3398] [3399] [3400] Underfull \hbox (badness 1354) in paragraph at lines 7622--7626 []\T1/ptm/m/n/10 survival times, for time de-pen-dent pre-dic-tion. It gives th e time range [3401] [3402] [3403] [3404] [3405] [3406] [3407] [3408] [3409] [3410] [3411] [3412] [3413] [3414] [3415] [3416] Underfull \vbox (badness 10000) has occurred while \output is active [3417] [3418]) No file fullrefman.ind. (./fullrefman.aux) Package rerunfilecheck Warning: File `fullrefman.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Font Warning: Some font shapes were not available, defaults substituted. ) (see the transcript file for additional information)pdfTeX warning (dest): name {Rfn.tree} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.viewports} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.xyplot.zoo} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.ellipsePoints} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.ellipse} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.cluster.stats} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.chorizon} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.as.Rul.dsTMatrix.Rul.listw} has been referenced but does not exist, replaced by 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Transcript written on fullrefman.log. BUILDSTDERR: This is makeindex, version 2.15 [TeX Live 2018] (kpathsea + Thai support). BUILDSTDERR: Scanning input file fullrefman.idx...........................done (23712 entries accepted, 76 rejected). BUILDSTDERR: Sorting entries.......................................................................................................................................................................................................................................................................done (389807 comparisons). BUILDSTDERR: Generating output file fullrefman.ind..........................done (24653 lines written, 107 warnings). BUILDSTDERR: Output written in fullrefman.ind. BUILDSTDERR: Transcript written in fullrefman.ilg. 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[3] [4] Underfull \hbox (badness 2547) in paragraph at lines 141--149 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1 /ptm/m/n/10 such that \T1/zi4/m/n/10 1 - x != 1\T1/ptm/m/n/10 . Underfull \hbox (badness 10000) in paragraph at lines 141--149 \T1/ptm/m/n/10 It equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1 /ptm/m/n/10 if Underfull \hbox (badness 10000) in paragraph at lines 141--149 \T1/zi4/m/n/10 double.base \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.roundin g \T1/ptm/m/n/10 is 0; oth-er-wise, it is Underfull \hbox (badness 1668) in paragraph at lines 152--159 []\T1/ptm/m/n/10 the largest nor-mal-ized floating-point num-ber. Typ-i-cally, it is equal to [5] [6] Underfull \hbox (badness 1178) in paragraph at lines 297--301 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/ 10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues [7] [8] Underfull \hbox (badness 3977) in paragraph at lines 386--389 []\T1/ptm/m/n/10 logical: should \T1/zi4/m/n/10 minlength \T1/ptm/m/n/10 be ob- served strictly? Note that set-ting [9] [10] Underfull \hbox (badness 2556) in paragraph at lines 534--540 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ', [11] [12] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [13] [14] [15] [16] [17] [18] Underfull \hbox (badness 2671) in paragraph at lines 1145--1148 []\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec- tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis t of length [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] Overfull \hbox (26.27782pt too wide) in paragraph at lines 1920--1920 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [30] [31] [32] Underfull \hbox (badness 10000) in paragraph at lines 2118--2120 []\T1/ptm/m/n/10 a date-time ob-ject, or some-thing which can be co-erced by [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] Underfull \hbox (badness 10000) in paragraph at lines 3648--3650 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [55] [56] [57] Overfull \hbox (6.42029pt too wide) in paragraph at lines 3889--3889 [] \T1/zi4/m/n/10 c.factor <- function(..., recursive=TRUE) unlist(list(...) , recursive=recursive) [58] [59] [60] [61] [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] Underfull \hbox (badness 2521) in paragraph at lines 4873--4875 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] Overfull \hbox (5.27168pt too wide) in paragraph at lines 6026--6026 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [89] [90] Underfull \hbox (badness 2096) in paragraph at lines 6214--6227 []\T1/ptm/m/n/10 New restarts for \T1/zi4/m/n/10 withRestarts \T1/ptm/m/n/10 ca n be spec-i-fied in sev-eral ways. The sim-plest is in [91] [92] [93] Overfull \hbox (56.34871pt too wide) in paragraph at lines 6423--6425 []\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa ult", "internal", "wininet", "libcurl")\T1/ptm/m/n/10 : [94] [95] Underfull \hbox (badness 10000) in paragraph at lines 6565--6568 []\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo st gen-eral form (from RFC1738) is [96] [97] Underfull \hbox (badness 1442) in paragraph at lines 6747--6753 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \ T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re- move a Underfull \hbox (badness 1248) in paragraph at lines 6747--6753 \T1/ptm/m/n/10 Byte Or-der Mark if present (which it of-ten is for files and we b-pages gen-er-ated by Mi- Underfull \hbox (badness 2080) in paragraph at lines 6747--6753 \T1/ptm/m/n/10 crosoft ap-pli-ca-tions). If a BOM is re-quired (it is not rec-o m-mended) when writ-ing it [98] Underfull \hbox (badness 3568) in paragraph at lines 6809--6816 \T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as [99] [100] Underfull \vbox (badness 10000) has occurred while \output is active [101] [102] [103] Underfull \hbox (badness 1077) in paragraph at lines 7126--7132 []\T1/ptm/m/n/10 A length-one log-i-cal vec-tor that is not \T1/zi4/m/n/10 NA\T 1/ptm/m/n/10 . Con-di-tions of length greater Underfull \hbox (badness 1231) in paragraph at lines 7126--7132 \T1/ptm/m/n/10 than one are cur-rently ac-cepted with a warn-ing, but only the first el-e- [104] [105] [106] [107] [108] Underfull \hbox (badness 2096) in paragraph at lines 7467--7471 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [109] [110] Underfull \hbox (badness 3000) in paragraph at lines 7560--7562 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0, \T1/zi4/m/n/10 getOption("OutDec") \T1/ptm/m/n/10 is con-sulted when la-bels are con-structed for Underfull \hbox (badness 2351) in paragraph at lines 7585--7588 [][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T 1/ptm/m/n/10 , [111] [112] [113] [114] Underfull \hbox (badness 10000) in paragraph at lines 7840--7850 []\T1/zi4/m/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments to a data frame by call-ing [115] Underfull \hbox (badness 4479) in paragraph at lines 7911--7921 [][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[] [][] \T1/ptm/m/n/10 (for the col-umn names), [116] [117] [118] [119] [120] [121] [122] [123] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] Underfull \hbox (badness 1394) in paragraph at lines 9667--9672 []\T1/ptm/m/n/10 Subtraction of date-time ob-jects gives an ob-ject of this cla ss, by call-ing \T1/zi4/m/n/10 difftime \T1/ptm/m/n/10 with [140] [141] [142] [143] [144] Underfull \hbox (badness 1194) in paragraph at lines 10012--10017 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 dontCheck \T1/ptm/m/n/10 func-tion is the s ame as [][]\T1/zi4/m/n/10 identity[][][]\T1/ptm/m/n/10 , but is in-ter-preted b y \T1/zi4/m/n/10 R CMD check Underfull \hbox (badness 1231) in paragraph at lines 10012--10017 \T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of \T1/z i4/m/n/10 x\T1/ptm/m/n/10 . Cur-rently this is only used by [145] [146] [147] Underfull \hbox (badness 1735) in paragraph at lines 10217--10221 \T1/zi4/m/n/10 754-[]2008$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Double _ precision$[][]\T1/ptm/m/n/10 , [][]$\T1/ zi4/m/n/10 https : / / en . wikipedia . [148] [149] [150] [151] [152] [153] Underfull \hbox (badness 2150) in paragraph at lines 10640--10643 []\T1/ptm/m/n/10 logical in-di-cat-ing if du-pli-ca-tion should be con-sid-ered from the re-verse [154] Underfull \hbox (badness 6396) in paragraph at lines 10654--10662 []\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len t method def-i-ni-tions for Underfull \hbox (badness 2735) in paragraph at lines 10683--10690 []\T1/ptm/m/n/10 Except for fac-tors, log-i-cal and raw vec-tors the de-fault \ T1/zi4/m/n/10 nmax = NA \T1/ptm/m/n/10 is equiv-a-lent to [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] Underfull \hbox (badness 4569) in paragraph at lines 11763--11767 []\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been passed as an ar-gu-ment Underfull \hbox (badness 2401) in paragraph at lines 11763--11767 \T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller' s en-vi-ron-ment, i.e., one needs [169] [170] [171] [172] [173] [174] [175] [176] Underfull \hbox (badness 2698) in paragraph at lines 12340--12349 []\T1/ptm/m/n/10 Both \T1/zi4/m/n/10 $ \T1/ptm/m/n/10 and \T1/zi4/m/n/10 [[ \T1 /ptm/m/n/10 can be ap-plied to en-vi-ron-ments. Only char-ac-ter in-dices are a l-lowed Underfull \hbox (badness 4341) in paragraph at lines 12340--12349 \T1/ptm/m/n/10 and no par-tial match-ing is done. The se-man-tics of these op-e r-a-tions are those of [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] Underfull \hbox (badness 6236) in paragraph at lines 12999--13002 []\T1/ptm/m/n/10 For \T1/zi4/m/n/10 iconv \T1/ptm/m/n/10 this will give the im- ple-men-ta-tion as well as the ver-sion, for ex-am-ple [187] [188] [189] [190] [191] [192] Underfull \hbox (badness 2253) in paragraph at lines 13421--13423 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [193] Underfull \hbox (badness 1565) in paragraph at lines 13492--13496 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/ 10 , and [194] Underfull \hbox (badness 10000) in paragraph at lines 13536--13538 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m /n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with [195] [196] Underfull \hbox (badness 1466) in paragraph at lines 13676--13679 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/ zi4/m/n/10 file.copy \T1/ptm/m/n/10 and [197] Underfull \hbox (badness 10000) in paragraph at lines 13795--13799 [][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [ ][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 13806--13809 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [198] [199] [200] [201] Underfull \hbox (badness 3965) in paragraph at lines 14088--14092 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] Underfull \hbox (badness 4429) in paragraph at lines 14850--14853 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] \T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for [214] Underfull \hbox (badness 10000) in paragraph at lines 14950--14952 []\T1/ptm/m/n/10 If you set \T1/zi4/m/n/10 format \T1/ptm/m/n/10 it over-rides the set-ting of \T1/zi4/m/n/10 mode\T1/ptm/m/n/10 , so Underfull \hbox (badness 10000) in paragraph at lines 14956--14960 []\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b ers on the dec-i-mal point, so [215] Underfull \hbox (badness 10000) in paragraph at lines 14995--14999 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt m/m/n/10 3.2.0: for use Underfull \hbox (badness 4156) in paragraph at lines 14995--14999 \T1/ptm/m/n/10 within [][]\T1/zi4/m/n/10 print[][][] \T1/ptm/m/n/10 meth-ods in pack-ages which might be used with ear-lier ver-sions: use [216] Underfull \vbox (badness 10000) has occurred while \output is active [217] [218] [219] [220] [221] [222] [223] [224] Underfull \hbox (badness 2452) in paragraph at lines 15587--15591 []\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 15587--15591 \T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_ WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and [225] [226] Underfull \hbox (badness 1092) in paragraph at lines 15760--15765 [][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t he DLL has been loaded us-ing [227] [228] [229] [230] Underfull \hbox (badness 6741) in paragraph at lines 16011--16015 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \ T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10 , [231] [232] [233] [234] Underfull \hbox (badness 1867) in paragraph at lines 16317--16324 []\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][] [] (or char-ac-ter string for [235] [236] [237] [238] Underfull \vbox (badness 10000) has occurred while \output is active [239] [240] Underfull \hbox (badness 3679) in paragraph at lines 16727--16729 []\T1/ptm/m/n/10 The TRE li-brary of Ville Lau-rikari ([][]$\T1/zi4/m/n/10 http : / / laurikari . net / tre/$[][]\T1/ptm/m/n/10 ) is used ex-cept for [241] [242] [243] [244] [245] [246] [247] [248] Underfull \hbox (badness 1478) in paragraph at lines 17292--17295 []\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [249] [250] [251] Underfull \hbox (badness 10000) in paragraph at lines 17545--17547 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 http : / / www . unicode . org / reports / tr35 / [252] [253] [254] [255] [256] [257] [258] [259] [260] Underfull \hbox (badness 1442) in paragraph at lines 18136--18138 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see [261] Underfull \hbox (badness 2452) in paragraph at lines 18228--18244 [][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 , [262] [263] [264] [265] [266] [267] Underfull \hbox (badness 1248) in paragraph at lines 18642--18645 []\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n /10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/ m/n/10 , [268] [269] [270] [271] Underfull \hbox (badness 4739) in paragraph at lines 18900--18902 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [272] [273] [274] [275] [276] [277] [278] [279] [280] [281] [282] [283] [284] [285] [286] [287] Underfull \hbox (badness 2469) in paragraph at lines 19917--19922 []\T1/ptm/m/n/10 In late 2017 a \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 in-stal-l a-tion was seen di-vided into two li-braries, \T1/zi4/m/n/10 libcurl \T1/ptm/m/ n/10 and [288] Underfull \hbox (badness 10000) in paragraph at lines 19931--19938 [][][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / sslcerts . html$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / Underfull \hbox (badness 10000) in paragraph at lines 20005--20009 []\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory Underfull \hbox (badness 2460) in paragraph at lines 20005--20009 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/ 10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T 1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10 ' [289] [290] Underfull \hbox (badness 1509) in paragraph at lines 20140--20147 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 library \T1/ptm/m/n/10 is called with no \T1 /zi4/m/n/10 package \T1/ptm/m/n/10 or \T1/zi4/m/n/10 help \T1/ptm/m/n/10 ar-gu- ment, it lists all avail-able pack-ages Underfull \hbox (badness 1552) in paragraph at lines 20140--20147 \T1/ptm/m/n/10 Use \T1/zi4/m/n/10 .packages(all = TRUE) \T1/ptm/m/n/10 to ob-ta in just the names of all avail-able pack-ages, and Underfull \hbox (badness 1014) in paragraph at lines 20156--20161 []\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1 0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if [291] [292] [293] [294] [295] [296] [297] [298] [299] [300] [301] Underfull \hbox (badness 1264) in paragraph at lines 20907--20912 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [302] Underfull \hbox (badness 4441) in paragraph at lines 20936--20939 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory \T1/zi4/m/n/10 "LC_ALL" \T1/ptm/ m/n/10 sets only cat-e-gories \T1/zi4/m/n/10 "LC_COLLATE"\T1/ptm/m/n/10 , \T1/z i4/m/n/10 "LC_CTYPE"\T1/ptm/m/n/10 , [303] [304] [305] [306] [307] [308] [309] [310] [311] [312] Underfull \hbox (badness 10000) in paragraph at lines 21670--21672 []\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n /10 has the prop-erty that [313] [314] [315] [316] [317] [318] [319] [320] [321] [322] [323] [324] [325] [326] [327] [328] Underfull \hbox (badness 1077) in paragraph at lines 22705--22711 \T1/zi4/m/n/10 / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm/m/n/10 , [][ ]$\T1/zi4/m/n/10 http : / / tukaani . org / xz/$[][] \T1/ptm/m/n/10 and [][]$\T 1/zi4/m/n/10 https : / / en . wikipedia . [329] [330] Underfull \hbox (badness 1484) in paragraph at lines 22868--22876 \T1/ptm/m/n/10 to al-low more (up to 3Gb). See [][]$\T1/zi4/m/n/10 https : / / www . microsoft . com / whdc / system / platform / [331] [332] [333] [334] Underfull \hbox (badness 2790) in paragraph at lines 23153--23156 []\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s ages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 23153--23156 \T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m es-sages, so can be sup-pressed by [335] [336] [337] [338] Underfull \hbox (badness 1194) in paragraph at lines 23435--23438 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 . It calls [339] [340] [341] Underfull \hbox (badness 10000) in paragraph at lines 23641--23647 []\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 , \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond- ing Underfull \hbox (badness 7379) in paragraph at lines 23641--23647 \T1/ptm/m/n/10 list, i.e., \T1/zi4/m/n/10 names(as.list(env, all.names = TRUE)) \T1/ptm/m/n/10 which are also given by Underfull \hbox (badness 10000) in paragraph at lines 23651--23654 []\T1/ptm/m/n/10 It is pos-si-ble to up-date just part of the names at-tribute via the gen-eral rules: Underfull \hbox (badness 10000) in paragraph at lines 23651--23654 \T1/ptm/m/n/10 see the ex-am-ples. This works be-cause the ex-pres-sion there i s eval-u-ated as [342] [343] [344] [345] [346] [347] Underfull \hbox (badness 10000) in paragraph at lines 24022--24025 []\T1/ptm/m/n/10 optional [][]\T1/zi4/m/n/10 logical[][][] \T1/ptm/m/n/10 even- tu-ally to be passed to \T1/zi4/m/n/10 print()\T1/ptm/m/n/10 , used by [348] [349] [350] [351] [352] [353] [354] [355] Underfull \hbox (badness 10000) in paragraph at lines 24614--24616 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m ore ef-fi-cient than [356] [357] [358] [359] Underfull \hbox (badness 1199) in paragraph at lines 24858--24864 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 is.numeric \T1/ptm/m/n/ 10 re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode [][][] \T1/zi4/m/n/10 "numeric" Underfull \hbox (badness 2027) in paragraph at lines 24858--24864 \T1/ptm/m/n/10 ([][]type[][][] \T1/zi4/m/n/10 "double" \T1/ptm/m/n/10 or type \ T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 ) and not a fac-tor, and \T1/zi4/m/n/10 F ALSE \T1/ptm/m/n/10 oth-er-wise. That is, [360] [361] [362] [363] [364] [365] [366] [367] Underfull \hbox (badness 1038) in paragraph at lines 25450--25458 []\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/ 10 R \T1/ptm/m/n/10 starts up. Ini-tially Underfull \hbox (badness 1881) in paragraph at lines 25459--25462 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 25478--25480 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [368] Underfull \hbox (badness 10000) in paragraph at lines 25587--25597 []\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/zi4/m /n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to Underfull \hbox (badness 2142) in paragraph at lines 25598--25604 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able [369] Underfull \hbox (badness 1968) in paragraph at lines 25634--25639 []\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 25644--25646 []\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v alue [370] [371] Underfull \hbox (badness 10000) in paragraph at lines 25907--25913 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/ n/10 setRepositories[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 25907--25913 \T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "https://bioconductor.org"\T1/ ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 25907--25913 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de"\ T1/ptm/m/n/10 '. Can be set by [372] Underfull \hbox (badness 10000) in paragraph at lines 25920--25923 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][ ][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10 and Underfull \hbox (badness 2689) in paragraph at lines 25944--25946 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see Underfull \hbox (badness 10000) in paragraph at lines 25976--25981 []\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/ 10 (and in-di-rectly Underfull \hbox (badness 1629) in paragraph at lines 25982--25993 \T1/ptm/m/n/10 si-ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi 4/m/n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use an d Underfull \hbox (badness 7203) in paragraph at lines 25994--25997 []\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/ n/10 and Underfull \hbox (badness 3713) in paragraph at lines 26004--26016 \T1/ptm/m/n/10 Pos-si-ble val-ues are \T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (t he de-fault ex-cept un-der a CRAN ma-cOS build), Underfull \hbox (badness 7944) in paragraph at lines 26004--26016 \T1/zi4/m/n/10 "mac.binary.el-capitan" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "both" \T1/ptm/m/n/10 (the de-fault for CRAN ma-cOS builds). Underfull \hbox (badness 2351) in paragraph at lines 26004--26016 \T1/ptm/m/n/10 Win-dows uses \T1/zi4/m/n/10 "win.binary"\T1/ptm/m/n/10 . (\T1/z i4/m/n/10 "mac.binary.mavericks"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "mac.binary.leo pard"\T1/ptm/m/n/10 , [373] Underfull \hbox (badness 10000) in paragraph at lines 26018--26025 []\T1/ptm/m/n/10 URLs of the repos-i-to-ries for use by [][]\T1/zi4/m/n/10 upda te.packages[][][]\T1/ptm/m/n/10 . De-faults to Underfull \hbox (badness 10000) in paragraph at lines 26018--26025 \T1/zi4/m/n/10 c(CRAN="@CRAN@")\T1/ptm/m/n/10 , a value that causes some util-i -ties to prompt for a Underfull \hbox (badness 6380) in paragraph at lines 26018--26025 \T1/ptm/m/n/10 CRAN mir-ror. To avoid this do set the CRAN mir-ror, by some-thi ng like Underfull \hbox (badness 1874) in paragraph at lines 26018--26025 \T1/zi4/m/n/10 local({r <- getOption("repos"); r["CRAN"] <- "http://my.local.cr an"; [374] [375] [376] [377] Underfull \hbox (badness 10000) in paragraph at lines 26362--26366 []\T1/ptm/m/n/10 The outer prod-uct of the ar-rays \T1/zi4/m/n/10 X \T1/ptm/m/n /10 and \T1/zi4/m/n/10 Y \T1/ptm/m/n/10 is the ar-ray \T1/zi4/m/n/10 A \T1/ptm/ m/n/10 with di-men-sion Underfull \hbox (badness 10000) in paragraph at lines 26362--26366 \T1/zi4/m/n/10 c(dim(X), dim(Y)) \T1/ptm/m/n/10 where el-e-ment \T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] [378] [379] [380] [381] [382] Underfull \hbox (badness 1735) in paragraph at lines 26681--26685 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 paste() \T1/ptm/m/n/10 co-erces [][]\ T1/zi4/m/n/10 NA_character_[][][]\T1/ptm/m/n/10 , the char-ac-ter miss-ing valu e, to \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 which [383] [384] [385] [386] [387] [388] [389] [390] [391] Underfull \hbox (badness 2726) in paragraph at lines 27256--27259 []\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di -cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put, see [392] [393] [394] [395] [396] [397] [398] [399] [400] [401] [402] [403] Underfull \hbox (badness 1052) in paragraph at lines 28085--28090 []\T1/zi4/m/n/10 qr.X \T1/ptm/m/n/10 re-turns $\OML/cmm/b/it/10 X$\T1/ptm/m/n/1 0 , the orig-i-nal ma-trix from which the qr ob-ject was con-structed, pro-vide d [404] [405] [406] [407] [408] [409] [410] [411] [412] [413] [414] [415] Underfull \hbox (badness 1533) in paragraph at lines 28917--28920 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [416] [417] Underfull \hbox (badness 1163) in paragraph at lines 29080--29091 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\ T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [418] [419] [420] [421] [422] [423] [424] [425] [426] [427] [428] [429] [430] [431] [432] [433] [434] [435] [436] [437] [438] [439] Underfull \hbox (badness 10000) in paragraph at lines 30613--30617 []\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n /10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 30613--30617 \T1/zi4/m/n/10 "(?[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t he matches are also re-turned by name. [440] Underfull \hbox (badness 6188) in paragraph at lines 30635--30637 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p ubs . opengroup . org / onlinepubs / 9699919799 / [441] [442] [443] [444] [445] [446] [447] [448] Underfull \hbox (badness 1655) in paragraph at lines 31178--31180 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm /m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for [449] [450] [451] [452] [453] [454] [455] [456] [457] [458] Underfull \hbox (badness 10000) in paragraph at lines 31886--31890 []\T1/zi4/m/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my c ur-rent workspace', i.e., [459] [460] [461] [462] Underfull \hbox (badness 2302) in paragraph at lines 32137--32144 []\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d e-fined as $[]$, Underfull \hbox (badness 2837) in paragraph at lines 32137--32144 \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non -missing Underfull \hbox (badness 3333) in paragraph at lines 32137--32144 \T1/ptm/m/n/10 val-ues. In the case \T1/zi4/m/n/10 center = TRUE\T1/ptm/m/n/10 , this is the same as the stan-dard de-vi-a-tion, Underfull \hbox (badness 2181) in paragraph at lines 32137--32144 \T1/ptm/m/n/10 but in gen-eral it is not. (To scale by the stan-dard de-vi-a-ti ons with-out cen-ter-ing, use [463] [464] Underfull \hbox (badness 2261) in paragraph at lines 32293--32298 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i t ap-plies to all fields; oth-er-wise, if Underfull \hbox (badness 10000) in paragraph at lines 32320--32326 []\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac- ters [465] Underfull \hbox (badness 10000) in paragraph at lines 32396--32401 []\T1/ptm/m/n/10 Note that since \T1/zi4/m/n/10 sep \T1/ptm/m/n/10 is a sep-a-r a-tor and not a ter-mi-na-tor, read-ing a file by [466] [467] [468] [469] [470] [471] [472] [473] [474] [475] [476] [477] [478] [479] [480] [481] [482] [483] [484] [485] [486] [487] [488] [489] [490] [491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501] Underfull \vbox (badness 10000) has occurred while \output is active [502] [503] [504] [505] [506] [507] [508] Underfull \hbox (badness 1072) in paragraph at lines 35438--35442 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 35443--35447 []\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/ 10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 - -no-init-file\T1/ptm/m/n/10 ', [509] Underfull \hbox (badness 10000) in paragraph at lines 35471--35477 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 35471--35477 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 35471--35477 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in Underfull \hbox (badness 3343) in paragraph at lines 35483--35490 \T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 35483--35490 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 35483--35490 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [510] [511] [512] [513] [514] Underfull \hbox (badness 10000) in paragraph at lines 35824--35830 []\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form at \T1/ptm/m/n/10 meth-ods is Underfull \hbox (badness 1264) in paragraph at lines 35824--35830 \T1/zi4/m/n/10 "%Y-%m-%d %H:%M:%S" \T1/ptm/m/n/10 if any el-e-ment has a time c om-po-nent which is [515] [516] [517] [518] [519] [520] [521] [522] [523] [524] [525] [526] [527] [528] [529] [530] [531] [532] [533] [534] [535] [536] [537] [538] Underfull \vbox (badness 10000) has occurred while \output is active [539] [540] [541] Underfull \hbox (badness 3333) in paragraph at lines 37674--37679 []\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi s may need to be matched ex-plic-itly: for ex-am-ple [542] [543] [544] [545] [546] [547] [548] [549] [550] [551] Underfull \hbox (badness 1472) in paragraph at lines 38306--38309 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee p their source in-clud-ing com-ments, see [552] [553] [554] [555] [556] [557] [558] [559] [560] [561] [562] [563] [564] Underfull \hbox (badness 10000) in paragraph at lines 39212--39216 []\T1/ptm/m/n/10 On 64-bit plat-forms \T1/zi4/m/n/10 bin \T1/ptm/m/n/10 can hav e $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., [565] [566] [567] [568] Underfull \hbox (badness 10000) in paragraph at lines 39462--39465 [][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [ ][]$https : / / developer . r-[]project . org / [569] Underfull \hbox (badness 10000) in paragraph at lines 39580--39584 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 getTaskCallbackNames [][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer . [570] Underfull \hbox (badness 10000) in paragraph at lines 39642--39646 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[ ][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer . [571] [572] [573] [574] [575] [576] [577] Underfull \vbox (badness 1681) has occurred while \output is active [578] [579] Underfull \hbox (badness 4013) in paragraph at lines 40255--40257 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / www . twinsun . com / tz / tz-[]link . [580] [581] [582] [583] [584] Underfull \vbox (badness 10000) has occurred while \output is active [585] [586] [587] [588] [589] [590] [591] Underfull \hbox (badness 3460) in paragraph at lines 41136--41139 []\T1/ptm/m/n/10 a [][]con-nec-tion[][][], or a char-ac-ter string nam-ing the file to print to (via Underfull \hbox (badness 1990) in paragraph at lines 41143--41151 []\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e r-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 41143--41151 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less [592] [593] [594] [595] Underfull \hbox (badness 10000) in paragraph at lines 41420--41423 []\T1/ptm/m/n/10 On most plat-forms `file' in-cludes sym-bolic links, fi-fos an d sock-ets. [596] [597] [598] Underfull \hbox (badness 1917) in paragraph at lines 41648--41655 []\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/ ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute [599] [600] [601] [602] [603] [604] [605] [606] [607] [608] [609] Underfull \hbox (badness 3668) in paragraph at lines 42369--42371 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di- ately, even if [610] [611] Underfull \hbox (badness 2401) in paragraph at lines 42497--42501 []\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [612] [613] Underfull \hbox (badness 2111) in paragraph at lines 42686--42691 \T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n ot empty, these are used as col-umn names. [614] Underfull \hbox (badness 7362) in paragraph at lines 42702--42707 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m /n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is [615] [616] [617] [618] [619] [620] [621] [622] Underfull \hbox (badness 5417) in paragraph at lines 43281--43285 []\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [623] Underfull \hbox (badness 10000) in paragraph at lines 43342--43346 []\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard ' reg-exps, in-clud-ing el-e-ments named [624]) (./compiler-pkg.tex Chapter 2. [625] [626] [627] [628]) (./datasets-pkg.tex Chapter 3. [629] [630] [631] [632] [633] [634] Underfull \vbox (badness 1472) has occurred while \output is active [635] [636] [637] [638] [639] [640] [641] [642] [643] Underfull \hbox (badness 1097) in paragraph at lines 1031--1035 []\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th e iden-ti-fi-ca-tion of crim-i-nals. [644] [645] [646] [647] [648] [649] [650] [651] [652] [653] [654] [655] [656] [657] [658] [659] [660] [661] [662] [663] [664] [665] Overfull \vbox (4.26088pt too high) has occurred while \output is active [666] [667] [668] [669] [670] [671] Overfull \vbox (13.87083pt too high) has occurred while \output is active [672] Underfull \vbox (badness 2376) has occurred while \output is active [673] [674] Overfull \vbox (12.25539pt too high) has occurred while \output is active [675] [676] Overfull \vbox (17.12102pt too high) has occurred while \output is active [677] [678] [679] [680] [681] [682] [683] [684] [685] [686] [687] Overfull \vbox (10.49593pt too high) has occurred while \output is active [688] Overfull \vbox (15.49593pt too high) has occurred while \output is active [689] [690] [691] [692] [693] [694] [695] [696] [697] [698] [699] [700] [701] [702] [703]) (./grDevices-pkg.tex [704] Chapter 4. [705] [706] [707] [708] [709] [710] [711] [712] [713] [714] [715] [716] [717] [718] [719] [720] Underfull \hbox (badness 5175) in paragraph at lines 1082--1084 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [721] [722] [723] Underfull \hbox (badness 1852) in paragraph at lines 1279--1282 []\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col- ors that will be used in plot-ting, call-ing [724] [725] [726] Underfull \hbox (badness 1490) in paragraph at lines 1485--1490 \T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\ T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/ 10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and [727] [728] Underfull \hbox (badness 10000) in paragraph at lines 1608--1612 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , the func-tion also re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 when [729] [730] [731] [732] Underfull \hbox (badness 1325) in paragraph at lines 1891--1901 \T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/ 10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1 /ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 , [733] Underfull \hbox (badness 10000) in paragraph at lines 1996--1998 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [734] [735] [736] Underfull \hbox (badness 6758) in paragraph at lines 2157--2160 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [737] [738] [739] [740] [741] [742] [743] [744] [745] Underfull \hbox (badness 10000) in paragraph at lines 2750--2751 Underfull \vbox (badness 10000) has occurred while \output is active [746] [747] [748] [749] [750] [751] [752] Underfull \hbox (badness 10000) in paragraph at lines 3248--3253 []\T1/zi4/m/n/10 nclass.FD \T1/ptm/m/n/10 uses the Freedman-Diaconis choice bas ed on the inter-quartile range [753] [754] [755] [756] Underfull \hbox (badness 3302) in paragraph at lines 3514--3517 []\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv e a C in-te-ger for-mat such as Underfull \hbox (badness 2662) in paragraph at lines 3528--3530 []\T1/ptm/m/n/10 title string to em-bed as the `\T1/zi4/m/n/10 /Title\T1/ptm/m/ n/10 ' field in the file. De-faults to [757] [758] [759] [760] [761] [762] [763] [764] [765] [766] [767] [768] Underfull \hbox (badness 1067) in paragraph at lines 4355--4362 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [769] [770] [771] [772] Underfull \hbox (badness 1789) in paragraph at lines 4595--4597 []\T1/ptm/m/n/10 title string to em-bed as the \T1/zi4/m/n/10 Title \T1/ptm/m/n /10 com-ment in the file. De-faults to Underfull \hbox (badness 1377) in paragraph at lines 4645--4650 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [773] Underfull \hbox (badness 2671) in paragraph at lines 4672--4680 \T1/ptm/m/n/10 For use in this way you will prob-a-bly want to use [][]\T1/zi4/ m/n/10 setEPS[][][]() \T1/ptm/m/n/10 to set the de-faults as Underfull \hbox (badness 1418) in paragraph at lines 4721--4728 \T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4 /m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/ zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm /m/n/10 , Underfull \hbox (badness 2443) in paragraph at lines 4729--4738 \T1/ptm/m/n/10 PostScript de-vice is us-ing URW fonts, you will ob-tain ac-cess to more char-ac-ters and Underfull \hbox (badness 2653) in paragraph at lines 4729--4738 \T1/ptm/m/n/10 more ap-pro-pri-ate met-rics by us-ing these names. To make thes e eas-ier to re-mem-ber, Underfull \hbox (badness 1755) in paragraph at lines 4739--4741 []\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East Asian lan-guages -- see [774] [775] Underfull \hbox (badness 1377) in paragraph at lines 4850--4855 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \ T1/zi4/m/n/10 "rgb" \T1/ptm/m/n/10 (which is RGB+gray) and Underfull \hbox (badness 7344) in paragraph at lines 4910--4912 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [776] [777] Underfull \hbox (badness 2035) in paragraph at lines 5034--5043 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5034--5043 \T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/ n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 5034--5043 \T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 , [778] [779] Underfull \hbox (badness 10000) in paragraph at lines 5102--5109 []\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4 /m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu / Underfull \hbox (badness 2189) in paragraph at lines 5102--5109 \T1/zi4/m/n/10 chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Lunde's CJK V re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly . [780] [781] Underfull \hbox (badness 1546) in paragraph at lines 5244--5252 []\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T 1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/ n/10 , [782] Underfull \hbox (badness 1648) in paragraph at lines 5321--5325 []\T1/ptm/m/n/10 title for the Quartz win-dow (ap-plies to on-screen out-put on ly), de-fault [783] [784] [785] [786] [787] [788] Underfull \hbox (badness 10000) in paragraph at lines 5772--5775 []\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red /green/blue) into HSV space [789] [790] [791] [792] [793] [794] [795] Underfull \hbox (badness 1189) in paragraph at lines 6169--6171 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [796] Underfull \hbox (badness 10000) in paragraph at lines 6267--6269 []\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK lan-guages and [797] [798] [799] [800] Underfull \hbox (badness 3780) in paragraph at lines 6558--6564 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1 0 "AvantGarde"\T1/ptm/m/n/10 , [801] [802] [803] Underfull \hbox (badness 2680) in paragraph at lines 6759--6761 []\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of [804] [805] [806]) (./graphics-pkg.tex Chapter 5. [807] [808] [809] [810] [811] [812] [813] [814] [815] [816] Underfull \hbox (badness 10000) in paragraph at lines 687--694 []\T1/zi4/m/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/p tm/m/n/10 in-ter-face to the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/pt m/m/n/10 in [817] [818] [819] [820] Underfull \vbox (badness 10000) has occurred while \output is active [821] [822] [823] [824] [825] Underfull \hbox (badness 4634) in paragraph at lines 1262--1265 [][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n /10 , [826] [827] [828] [829] [830] [831] [832] [833] [834] [835] [836] [837] [838] [839] [840] [841] Underfull \hbox (badness 1009) in paragraph at lines 2296--2303 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [842] [843] [844] [845] [846] [847] [848] [849] [850] [851] [852] [853] [854] [855] [856] [857] [858] [859] [860] [861] [862] Underfull \vbox (badness 10000) has occurred while \output is active [863] [864] [865] [866] Underfull \hbox (badness 1867) in paragraph at lines 3950--3954 []\T1/ptm/m/n/10 vector of back-ground (fill) col-ors for the open plot sym-bol s given by [867] [868] [869] [870] [871] [872] [873] Underfull \hbox (badness 1924) in paragraph at lines 4400--4405 []\T1/ptm/m/n/10 a func-tion which in-di-cates what should hap-pen when the dat a con-tain [874] Underfull \hbox (badness 2529) in paragraph at lines 4431--4434 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used: see [875] [876] [877] [878] Underfull \hbox (badness 10000) in paragraph at lines 4781--4787 []\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n /10 (width, height) \T1/ptm/m/n/10 in user co-or-di-nate units. Underfull \hbox (badness 5908) in paragraph at lines 4781--4787 \T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin" ) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that [879] [880] Underfull \hbox (badness 10000) in paragraph at lines 4912--4915 [881 ] Underfull \hbox (badness 10000) in paragraph at lines 4973--4975 [882 ] [883] Underfull \hbox (badness 10000) in paragraph at lines 5163--5165 []\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2 :6\T1/ptm/m/n/10 ) cor-re-spond to [884] [885] [886] [887] [888] [889] [890] [891] [892] [893] [894] [895] [896] [897] [898] [899] [900] [901] [902] [903] [904] [905] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6634--6635 [][] [906 ] [907] Underfull \vbox (badness 10000) has occurred while \output is active [908] [909] [910] [911] [912] [913] [914] [915] [916] Underfull \hbox (badness 1048) in paragraph at lines 7343--7348 \T1/ptm/m/n/10 avoided (see the Warn-ings sec-tion be-low). Split-screen mode i s ex-ited by the com-mand [917] [918] Underfull \hbox (badness 1102) in paragraph at lines 7459--7462 []\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d rawn be-tween the point \T1/zi4/m/n/10 (x0[i], y0[i]) \T1/ptm/m/n/10 and the po int [919] [920] [921] [922] [923] [924] [925] [926] [927] [928] [929] [930] [931] Underfull \hbox (badness 1043) in paragraph at lines 8300--8304 []\T1/ptm/m/n/10 For \T1/zi4/m/n/10 number[i] == 1\T1/ptm/m/n/10 , a (slightly en-larged) usual plot-ting sym-bol (\T1/zi4/m/n/10 pch\T1/ptm/m/n/10 ) is drawn . For [932] [933] [934] [935] [936] [937] Underfull \hbox (badness 10000) in paragraph at lines 8707--8709 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color Underfull \hbox (badness 10000) in paragraph at lines 8709--8711 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color [938]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.unit s}) has been already used, duplicate ignored \relax l.8789 \HeaderA{units}{Graphical Units}{units} [939] [940] [941] [942]) (./grid-pkg.tex Chapter 6. [943] [944] [945] [946] [947] [948] Underfull \hbox (badness 2680) in paragraph at lines 392--395 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1 /zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio n of [949] [950] [951] [952] [953] [954] [955] [956] [957] Underfull \hbox (badness 4279) in paragraph at lines 972--981 [][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m /n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 unit[][][]\T1/ptm/m/n/10 , [958] [959] [960] [961] [962] [963] [964] [965] [966] [967] [968] [969] [970] [971] [972] [973] [974] [975] [976] [977] [978] [979] [980] [981] [982] [983] [984] [985] [986] [987] [988] [989] [990] [991] [992] [993] [994] [995] [996] [997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009] [1010] Underfull \hbox (badness 1067) in paragraph at lines 4355--4358 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1011] [1012] [1013] [1014] Underfull \hbox (badness 7256) in paragraph at lines 4600--4602 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1015] [1016] [1017] [1018] [1019] [1020] [1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033] Underfull \hbox (badness 10000) in paragraph at lines 5877--5883 \T1/ptm/m/n/10 and to spec-ify the min-i-mum or max-i-mum of a list of unit ob- jects (e.g., [1034] [1035] [1036] [1037] [1038] [1039] [1040] [1041] Underfull \hbox (badness 7649) in paragraph at lines 6356--6359 []\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by do-ing some-thing like [1042] [1043] [1044] [1045]) (./methods-pkg.tex [1046] Chapter 7. [1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] Underfull \vbox (badness 10000) has occurred while \output is active [1055] Underfull \vbox (badness 10000) has occurred while \output is active [1056] [1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064] Underfull \hbox (badness 2237) in paragraph at lines 1385--1387 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \ T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package "\T1/ptm/m/n/10 , also of class [1065] [1066] [1067] [1068] [1069] [1070] [1071] [1072] Underfull \hbox (badness 1077) in paragraph at lines 1932--1939 []\T1/ptm/m/n/10 Two vir-tual classes are sup-plied to test for ref-er-ence ob- jects: \T1/zi4/m/n/10 is(x, "refClass") \T1/ptm/m/n/10 tests Underfull \hbox (badness 10000) in paragraph at lines 1981--1986 []\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c an be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1981--1986 \T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1 0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the [1073] [1074] [1075] Underfull \hbox (badness 1242) in paragraph at lines 2214--2219 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use \T1/zi4/m/n/10 where = [1076] [1077] [1078] [1079] [1080] Underfull \hbox (badness 10000) in paragraph at lines 2574--2577 []\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o b-jects of class [1081] [1082] Underfull \hbox (badness 1132) in paragraph at lines 2714--2718 []\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1 0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re -turned re-sult is in Underfull \hbox (badness 1033) in paragraph at lines 2746--2751 \T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store s the [1083] [1084] [1085] [1086] [1087] [1088] [1089] Underfull \hbox (badness 1102) in paragraph at lines 3303--3305 []\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na me of the pack-age (with-out the ex-tra-ne-ous [1090] [1091] [1092] [1093] [1094] Underfull \hbox (badness 10000) in paragraph at lines 3634--3639 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these classes takes spe-cial ar-gu-ments Underfull \hbox (badness 10000) in paragraph at lines 3642--3651 []\T1/ptm/m/n/10 The [1095] [1096] Overfull \hbox (123.02902pt too wide) in paragraph at lines 3762--3763 [] \T1/zi4/m/n/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longitude = "numeric", altitude = "numeric")) Underfull \hbox (badness 10000) in paragraph at lines 3762--3763 [1097] Overfull \hbox (16.41006pt too wide) in paragraph at lines 3846--3847 []\T1/zi4/m/n/10 Currency <- setClass("Currency", slots = c(unit = "character") , contains = "numeric") [1098] [1099] [1100] [1101] [1102] [1103] [1104] [1105] Underfull \hbox (badness 1436) in paragraph at lines 4443--4446 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "SealedMethodDefinition" \T1/ptm/m/n/ 10 is cre-ated by a call to [][]\T1/zi4/m/n/10 setMethod[][][] \T1/ptm/m/n/10 w ith ar-gu-ment Underfull \hbox (badness 1769) in paragraph at lines 4472--4478 []\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4472--4478 \T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T 1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by [1106] Underfull \hbox (badness 1092) in paragraph at lines 4531--4538 \T1/ptm/m/n/10 names cor-re-spond-ing to some or all of the for-mal ar-gu-ments . In the pre-vi-ous ex-am-ple, Underfull \hbox (badness 1117) in paragraph at lines 4531--4538 \T1/ptm/m/n/10 if se-lect-ing class \T1/zi4/m/n/10 "track" \T1/ptm/m/n/10 for \ T1/zi4/m/n/10 x\T1/ptm/m/n/10 , find-ing that the se-lec-tion was an-other meth -ods list and [1107] [1108] [1109] [1110] [1111] [1112] [1113] [1114] Underfull \vbox (badness 10000) has occurred while \output is active [1115] Underfull \vbox (badness 10000) has occurred while \output is active [1116] [1117] Underfull \hbox (badness 10000) in paragraph at lines 5355--5356 []\T1/zi4/m/n/10 unique.uncased <- function(x, incomparables = FALSE, ...) [1118] Underfull \hbox (badness 4036) in paragraph at lines 5437--5440 []\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10 the method to use in re-sponse to a [1119] Underfull \hbox (badness 3803) in paragraph at lines 5512--5514 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1120] [1121] [1122] Underfull \hbox (badness 1087) in paragraph at lines 5744--5749 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1123] [1124] [1125] [1126] [1127] [1128] [1129] [1130] Underfull \hbox (badness 1675) in paragraph at lines 6451--6457 \T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1131] [1132] [1133] [1134] Underfull \vbox (badness 10000) has occurred while \output is active [1135] [1136] [1137]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.S4}) has been already used, duplicate ignored \relax l.6973 \aliasA{S4}{S3Part}{S4} [1138] [1139] [1140]pdfTeX warning (ext4): desti nation with the same identifier (name{Rfn.Complex}) has been already used, dupl icate ignored \relax l.7229 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate ignored \relax l.7231 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) has been already used, duplicate igno red \relax l.7232 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination wi th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7234 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor ed \relax l.7235 \aliasA{Summary}{S4groupGeneric}{Summary} [1141] Underfull \hbox (badness 2050) in paragraph at lines 7296--7300 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1142] [1143] Underfull \hbox (badness 1286) in paragraph at lines 7484--7486 []\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal ly [1144] [1145] [1146] [1147] [1148] [1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] [1157] [1158] [1159] [1160] [1161] [1162] [1163] [1164] [1165] [1166] [1167] [1168] [1169] [1170] [1171] [1172] [1173] [1174] [1175] [1176] [1177] [1178] [1179] [1180] [1181] [1182] [1183] Underfull \hbox (badness 1852) in paragraph at lines 10564--10568 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1184] [1185] [1186]) (./parallel-pkg.tex Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4 /m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[ ][][]: see [1187] [1188] [1189] [1190] [1191] [1192] [1193] [1194] [1195] [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] [1204] [1205] Underfull \hbox (badness 3386) in paragraph at lines 1339--1342 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R andom.seed \T1/ptm/m/n/10 when the [1206] [1207] [1208]) (./splines-pkg.tex Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1209] [1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218] [1219] [1220] [1221] [1222]) (./stats-pkg.tex Chapter 10. [1223] [1224] [1225] [1226] [1227] [1228] [1229] [1230] [1231] [1232] [1233] [1234] [1235] Underfull \hbox (badness 1412) in paragraph at lines 847--849 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm \T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for [1236] [1237] [1238] [1239] [1240] [1241] [1242] Underfull \hbox (badness 2503) in paragraph at lines 1328--1331 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1243] [1244] Underfull \hbox (badness 10000) in paragraph at lines 1508--1512 []\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov", "lm") \T1/ptm/m/n/ 10 or for mul-ti-ple re-sponses of class [1245] [1246] [1247] [1248] Underfull \hbox (badness 10000) in paragraph at lines 1773--1777 []\T1/ptm/m/n/10 function to be called to han-dle miss-ing val-ues. Cur-rently, via Underfull \hbox (badness 1546) in paragraph at lines 1773--1777 \T1/zi4/m/n/10 na.action = na.pass\T1/ptm/m/n/10 , only Yule-Walker method can han-dle miss-ing [1249] [1250] [1251] [1252] [1253] [1254] Underfull \hbox (badness 3965) in paragraph at lines 2183--2185 []\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val id for [1255] [1256] [1257] [1258] [1259] Underfull \hbox (badness 3965) in paragraph at lines 2534--2536 []\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val id for [1260] [1261] [1262] [1263] [1264] [1265] [1266] [1267] [1268] [1269] [1270] Underfull \hbox (badness 2726) in paragraph at lines 3260--3276 \T1/ptm/m/n/10 We have slightly tweaked the orig-i-nal ``TOMS 708'' al-go-rithm , and en-hanced for [1271] [1272] Underfull \hbox (badness 2503) in paragraph at lines 3390--3393 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] [1281] [1282] [1283] [1284] [1285] [1286] [1287] [1288] [1289] [1290] [1291] Underfull \hbox (badness 3989) in paragraph at lines 4634--4641 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1292] [1293] Underfull \hbox (badness 3612) in paragraph at lines 4754--4756 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 "aov" \T1/ptm/m/n/10 method does not re-por t aliased co-ef-fi-cients (see [][]\T1/zi4/m/n/10 alias[][][]\T1/ptm/m/n/10 ) b y de-fault where [1294] [1295] [1296] [1297] [1298] [1299] [1300] Underfull \hbox (badness 2556) in paragraph at lines 5270--5273 []\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/ ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p tm/m/n/10 . For Underfull \hbox (badness 2932) in paragraph at lines 5287--5289 []\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se- quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is given by [1301] [1302] [1303] [1304] Underfull \hbox (badness 1142) in paragraph at lines 5528--5540 \T1/ptm/m/n/10 For \T1/zi4/m/n/10 cov()\T1/ptm/m/n/10 , a non-Pearson method is un-usual but avail-able for the sake of com-plete-ness. [1305] [1306] Underfull \hbox (badness 2503) in paragraph at lines 5680--5684 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1307] [1308] [1309] [1310] [1311] [1312] [1313] [1314] Underfull \hbox (badness 8132) in paragraph at lines 6184--6189 \T1/ptm/m/n/10 then \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is a den-dro-gram of the sa me graph struc-ture as \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and for each node, [1315] [1316] [1317] [1318] Underfull \hbox (badness 7081) in paragraph at lines 6462--6465 []\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 10000) in paragraph at lines 6466--6468 []\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also [1319] [1320] [1321] [1322] [1323] Underfull \vbox (badness 10000) has occurred while \output is active [1324] [1325] [1326] Underfull \vbox (badness 10000) has occurred while \output is active [1327] [1328] [1329] [1330] [1331] Underfull \hbox (badness 10000) in paragraph at lines 7311--7314 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T 1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the [1332] [1333] [1334] [1335] [1336] [1337] [1338] [1339] [1340] [1341] [1342] [1343] [1344] [1345] [1346] [1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355] Underfull \hbox (badness 2626) in paragraph at lines 8953--8956 []\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1356] [1357] Underfull \hbox (badness 2503) in paragraph at lines 9060--9064 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , Underfull \hbox (badness 2564) in paragraph at lines 9112--9121 []\T1/ptm/m/n/10 For larger than $\OT1/cmr/m/n/10 2 \OMS/cmsy/m/n/10 ^^B \OT1/c mr/m/n/10 2$ \T1/ptm/m/n/10 ta-bles and \T1/zi4/m/n/10 hybrid = TRUE\T1/ptm/m/n /10 , asymp-totic chi-squared prob-a-bil-i- Underfull \hbox (badness 1331) in paragraph at lines 9112--9121 \T1/ptm/m/n/10 ties are only used if the `Cochran con-di-tions' (or mod-i-fied ver-sion thereof) spec-i-fied by [1358] [1359] [1360] [1361] [1362] Overfull \hbox (3.53955pt too wide) in paragraph at lines 9434--9436 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Fligner-Killeen test of homogeneity of variances"\T1/ptm/m/n/10 . [1363] [1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375] Underfull \hbox (badness 4518) in paragraph at lines 10362--10367 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1376] [1377] [1378] [1379] [1380] Underfull \hbox (badness 2142) in paragraph at lines 10710--10713 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ Underfull \hbox (badness 1253) in paragraph at lines 10729--10732 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][ ]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it- er-a-tion. Hence, [1381] Underfull \hbox (badness 1708) in paragraph at lines 10791--10795 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1382] [1383] [1384] [1385] [1386] Underfull \hbox (badness 1694) in paragraph at lines 11189--11192 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1387] Underfull \hbox (badness 1867) in paragraph at lines 11208--11217 \T1/ptm/m/n/10 in the row case. If ei-ther is miss-ing, as by de-fault, then th e or-der-ing of the cor-re- [1388] [1389] [1390] [1391] [1392] Underfull \hbox (badness 10000) in paragraph at lines 11516--11519 []\T1/ptm/m/n/10 If one of $\OML/cmm/m/it/10 m; n; k$\T1/ptm/m/n/10 , ex-ceeds [][]\T1/zi4/m/n/10 .Machine[][][]$integer.max\T1/ptm/m/n/10 , cur-rently the eq uiv-a-lent of [1393] [1394]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.hat}) has been already used, duplicate ignored \relax l.11670 \aliasA{hat}{influence.measures}{hat} [1395] [1396] Underfull \hbox (badness 1484) in paragraph at lines 11801--11803 []\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1397] [1398] [1399] [1400] [1401] [1402] [1403] [1404] [1405] Underfull \hbox (badness 4441) in paragraph at lines 12387--12389 []\T1/ptm/m/n/10 vector of dif-fer-enc-ing co-ef-fi-cients, so an ARMA model is fit-ted to Underfull \hbox (badness 10000) in paragraph at lines 12394--12396 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa ult[][][] \T1/ptm/m/n/10 when [1406] [1407] [1408] [1409] [1410] Underfull \hbox (badness 2894) in paragraph at lines 12730--12734 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1411] [1412] [1413] [1414] [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] Underfull \hbox (badness 4518) in paragraph at lines 13480--13485 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1423] [1424] [1425] [1426] [1427] [1428] [1429] [1430] [1431] Underfull \hbox (badness 4518) in paragraph at lines 14132--14137 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1432] [1433] Underfull \hbox (badness 10000) in paragraph at lines 14270--14274 []\T1/ptm/m/n/10 Only for the (de-fault) case \T1/zi4/m/n/10 (surface = Underfull \hbox (badness 1199) in paragraph at lines 14277--14279 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if \T1/zi4/m/n/10 family \T1/ptm/m/n/10 is [1434] [1435] [1436] [1437] [1438] [1439] [1440] [1441] [1442] [1443] [1444] [1445] [1446] [1447] [1448] [1449] Underfull \hbox (badness 2503) in paragraph at lines 15345--15349 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1450] [1451] [1452] [1453] [1454] [1455] [1456] [1457] Underfull \hbox (badness 1584) in paragraph at lines 15857--15863 []\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response \T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(, "offset") \T1 /ptm/m/n/10 and [1458] [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475] [1476] [1477] [1478] [1479] [1480] [1481] [1482] Underfull \hbox (badness 2359) in paragraph at lines 17507--17509 []\T1/ptm/m/n/10 Douglas M. Bates and Saikat De-bRoy: David M. Gay for the For- tran code used by [1483] Underfull \vbox (badness 10000) has occurred while \output is active [1484] Underfull \vbox (badness 10000) has occurred while \output is active [1485] [1486] [1487] [1488] [1489] [1490] [1491] [1492] [1493] [1494] [1495] [1496] Underfull \hbox (badness 1377) in paragraph at lines 18419--18424 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on [1497] Underfull \hbox (badness 1735) in paragraph at lines 18424--18427 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 1454) in paragraph at lines 18437--18441 \T1/ptm/m/n/10 value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + reltol ) \T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 18445--18449 []\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \ T1/ptm/m/n/10 meth-ods if [1498] [1499] [1500] Overfull \hbox (15.73795pt too wide) in paragraph at lines 18669--18669 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Overfull \hbox (3.75941pt too wide) in paragraph at lines 18672--18672 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1501] [1502] [1503] [1504] [1505] [1506] Underfull \hbox (badness 1337) in paragraph at lines 19094--19097 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1507] [1508] [1509] [1510] [1511] [1512] [1513] [1514] Underfull \hbox (badness 3049) in paragraph at lines 19583--19587 []\T1/ptm/m/n/10 In the Cook's dis-tance vs leverage/(1-leverage) plot, con-tou rs of stan-dard-ized resid-u-als [1515] [1516] [1517] [1518] Underfull \hbox (badness 5563) in paragraph at lines 19838--19840 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , add to al-read y ex-ist-ing plot. Only valid for Underfull \hbox (badness 1194) in paragraph at lines 19841--19844 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1519] [1520] [1521] [1522] [1523] [1524] Underfull \hbox (badness 2503) in paragraph at lines 20216--20219 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1525] Underfull \hbox (badness 10000) in paragraph at lines 20243--20245 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1 /ptm/m/n/10 or [1526] [1527] [1528] [1529] [1530] [1531] [1532] [1533] [1534] [1535] [1536] [1537] [1538] [1539] [1540] [1541] Underfull \hbox (badness 10000) in paragraph at lines 21316--21322 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][ ][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 , [1542] [1543] [1544] [1545] [1546] [1547] [1548] [1549] [1550] [1551] [1552] [1553] [1554] [1555] [1556] [1557] [1558] [1559] [1560] [1561] [1562] Underfull \hbox (badness 1337) in paragraph at lines 22662--22668 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1563] [1564] [1565] [1566] [1567] [1568] [1569] [1570] Overfull \hbox (27.74408pt too wide) in paragraph at lines 23214--23214 [] \T1/zi4/m/n/9 t(vapply(1:9, function(typ) quantile(x, prob=prob, type = ty p, ...), quantile(x, prob, type=1)))[] [1571] [1572] [1573] [1574] Underfull \hbox (badness 10000) in paragraph at lines 23465--23468 []\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] Underfull \hbox (badness 10000) in paragraph at lines 24050--24053 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run med(x, k) \T1/ptm/m/n/10 sim-ply has [1584] Underfull \hbox (badness 3690) in paragraph at lines 24102--24106 [][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's end point rule and is called by de-fault from [1585] [1586] [1587] [1588] [1589] [1590] [1591] Underfull \hbox (badness 2165) in paragraph at lines 24581--24586 []\T1/ptm/m/n/10 Each of the fol-low-ing are \T1/zi4/m/n/10 "selfStart" \T1/ptm /m/n/10 mod-els (with ex-am-ples) [][]\T1/zi4/m/n/10 SSasymp[][][]\T1/ptm/m/n/1 0 , [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [1592] [1593] [1594] [1595] Underfull \hbox (badness 1867) in paragraph at lines 24786--24788 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 24799--24803 \T1/ptm/m/n/10 where \T1/zi4/m/n/10 NN <- [][]nobs[][][](object, use.fallback = use.fallback) \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 24799--24803 \T1/zi4/m/n/10 PP <- sum(!is.na([][]coef[][][](object))) \T1/ptm/m/n/10 -- wher e in older \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions this was Underfull \hbox (badness 1132) in paragraph at lines 24799--24803 \T1/zi4/m/n/10 length(coef(object)) \T1/ptm/m/n/10 which is too large in case o f un-de-ter-mined co-ef-fi-cients, e.g., for [1596] [1597] [1598] [1599] [1600] [1601] [1602] Underfull \hbox (badness 10000) in paragraph at lines 25271--25276 []\T1/ptm/m/n/10 integer or [][]\T1/zi4/m/n/10 function[][][] \T1/ptm/m/n/10 gi v-ing the num-ber of knots to use when [1603] [1604] [1605] [1606] [1607] [1608] [1609] [1610] [1611] [1612] [1613] [1614] [1615] [1616] Underfull \vbox (badness 10000) has occurred while \output is active [1617] Underfull \hbox (badness 3514) in paragraph at lines 26327--26332 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1618] [1619] Underfull \hbox (badness 3514) in paragraph at lines 26423--26428 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1620] Underfull \hbox (badness 3514) in paragraph at lines 26509--26514 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1621] Overfull \hbox (2.23795pt too wide) in paragraph at lines 26561--26561 [] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] [1622] Underfull \hbox (badness 3514) in paragraph at lines 26597--26603 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1623] [1624] [1625] Underfull \hbox (badness 3514) in paragraph at lines 26811--26816 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1626] [1627] Underfull \hbox (badness 3514) in paragraph at lines 26898--26903 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1628] Underfull \hbox (badness 3514) in paragraph at lines 26963--26968 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1629] Underfull \hbox (badness 3514) in paragraph at lines 27057--27062 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1630] [1631] Underfull \hbox (badness 6691) in paragraph at lines 27149--27154 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p tm/m/n/10 . It is the value of the ex-pres-sion [1632] [1633] [1634] [1635] [1636] [1637] [1638] [1639] Underfull \hbox (badness 10000) in paragraph at lines 27679--27682 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex- Underfull \hbox (badness 10000) in paragraph at lines 27679--27682 \T1/ptm/m/n/10 trac-tion, which should be odd. If \T1/zi4/m/n/10 NULL\T1/ptm/m/ n/10 , the de-fault, [1640] [1641] [1642] [1643] [1644] [1645] [1646] [1647] [1648] Underfull \hbox (badness 5431) in paragraph at lines 28285--28287 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1649] [1650] [1651] [1652] Underfull \hbox (badness 5431) in paragraph at lines 28495--28498 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1653] [1654] [1655] [1656] [1657] Underfull \hbox (badness 1337) in paragraph at lines 28809--28813 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1658] Underfull \hbox (badness 10000) in paragraph at lines 28926--28929 []\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/ 10 ; cur-rently ex-cept for \T1/zi4/m/n/10 rt()\T1/ptm/m/n/10 , only for [1659] [1660] [1661] Underfull \hbox (badness 1616) in paragraph at lines 29109--29112 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1662] [1663] [1664] [1665] [1666] [1667] [1668] [1669] [1670] [1671] [1672] [1673] [1674] [1675] [1676] [1677] [1678] [1679] Underfull \hbox (badness 10000) in paragraph at lines 30239--30243 []\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect [1680] [1681] Underfull \vbox (badness 10000) has occurred while \output is active [1682] [1683] [1684] Underfull \hbox (badness 1337) in paragraph at lines 30603--30607 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1685] [1686] [1687] [1688] [1689] [1690] [1691] [1692] Underfull \hbox (badness 1337) in paragraph at lines 31130--31134 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1693] Underfull \hbox (badness 2142) in paragraph at lines 31207--31212 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 x \T1/ptm/m/n/10 (and \T1/zi4/m/n/10 y \T1 /ptm/m/n/10 if ap-pli-ca-ble) are valid, the func-tion now al-ways re-turns, al so in the Underfull \hbox (badness 5161) in paragraph at lines 31229--31231 []\T1/ptm/m/n/10 an es-ti-mate of the lo-ca-tion pa-ram-e-ter. (Only present if ar-gu-ment [1694] [1695] [1696] [1697] [1698] [1699] Underfull \hbox (badness 10000) in paragraph at lines 31612--31617 []\T1/ptm/m/n/10 There is a \T1/zi4/m/n/10 summary \T1/ptm/m/n/10 method for co n-tin-gency ta-ble ob-jects cre-ated by \T1/zi4/m/n/10 table \T1/ptm/m/n/10 or [1700] [1701]) (./stats4-pkg.tex [1702] Chapter 11. [1703] [1704] [1705] [1706] [1707] [1708]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup licate ignored \relax l.407 ...Package \pkg{stats4}}{show.Rdash.methods} [1709] [1710] [1711]) (./tcltk-pkg.tex [1712] Chapter 12. [1713] [1714] [1715] [1716] [1717] [1718] [1719] Underfull \vbox (badness 10000) has occurred while \output is active [1720] Underfull \hbox (badness 1546) in paragraph at lines 664--671 []\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing any Tk or Tcl com-mand by sim-ply run-ning [1721] [1722] [1723] [1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731] Underfull \hbox (badness 3019) in paragraph at lines 1407--1410 [][][]\T1/zi4/m/n/10 select.list[][][] \T1/ptm/m/n/10 (a text ver-sion ex-cept on Win-dows and the ma-cOS GUI), [][]\T1/zi4/m/n/10 menu[][][] \T1/ptm/m/n/10 ( whose [1732]) (./tools-pkg.tex Chapter 13. [1733] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1734] Underfull \hbox (badness 3039) in paragraph at lines 164--167 []\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1735] [1736] Underfull \hbox (badness 1308) in paragraph at lines 285--298 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 285--298 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 formatMastersthesis\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm /m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma tTechreport \T1/ptm/m/n/10 and [1737] Underfull \hbox (badness 3039) in paragraph at lines 389--391 []\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine to use. Over-rides any [1738] [1739] [1740] [1741] [1742] [1743] [1744] Overfull \vbox (7.18602pt too high) has occurred while \output is active [1745] [1746] [1747] [1748] Underfull \hbox (badness 1635) in paragraph at lines 1056--1058 []\T1/ptm/m/n/10 Delete files in the tem-po-rary di-rec-tory? This op-tion is i g-nored when [1749] Underfull \hbox (badness 4441) in paragraph at lines 1134--1144 \T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe n-den-cies (de- [1750] Underfull \hbox (badness 1014) in paragraph at lines 1156--1158 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1162--1164 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous Underfull \hbox (badness 10000) in paragraph at lines 1199--1202 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1199--1202 \T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 , [1751] [1752] [1753] Underfull \hbox (badness 10000) in paragraph at lines 1377--1379 []\T1/ptm/m/n/10 Re-save PDF files (es-pe-cially vi-gnettes) more com-pactly. S up-port func-tion for [1754] [1755] Underfull \hbox (badness 2293) in paragraph at lines 1551--1553 []\T1/zi4/m/n/10 CRAN_memtest_notes() \T1/ptm/m/n/10 is now dep-re-cated, with its func-tion-al-ity in-te-grated into that of [1756] [1757] Underfull \hbox (badness 7981) in paragraph at lines 1689--1694 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1758] Underfull \hbox (badness 1082) in paragraph at lines 1696--1698 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see [1759] [1760] [1761]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ignored \relax l.1893 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [1762] [1763] [1764] [1765] Overfull \hbox (17.27782pt too wide) in paragraph at lines 2195--2195 []\T1/zi4/m/n/9 writeLines(paste0("\\newcommand{\\logo}{\\if{html}{\\figure{Rl ogo.svg}{options: width=100}",[] [1766] [1767] [1768] Underfull \hbox (badness 7981) in paragraph at lines 2364--2370 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1769] [1770] [1771] [1772] [1773] [1774] [1775] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/n' instead on input line 2829. [1776] [1777] [1778] [1779] Underfull \hbox (badness 1424) in paragraph at lines 3111--3113 []\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t or of links, as re-turned by [1780] [1781] [1782] [1783] [1784] [1785] [1786] [1787] [1788] [1789] Underfull \hbox (badness 10000) in paragraph at lines 3811--3813 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [1790] [1791] Underfull \hbox (badness 10000) in paragraph at lines 3950--3953 []\T1/ptm/m/n/10 Where sup-ported (\T1/zi4/m/sl/10 texi2dvi \T1/ptm/m/n/10 5.0 and later; \T1/zi4/m/sl/10 texify.exe \T1/ptm/m/n/10 from MiK-TeX), op-tion [1792] Underfull \hbox (badness 1137) in paragraph at lines 4048--4050 []\T1/ptm/m/n/10 a ma-trix spec-i-fy-ing all pack-ages in-stalled on the lo-cal sys-tem, as from [1793] [1794] [1795] [1796] Underfull \hbox (badness 1838) in paragraph at lines 4257--4263 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4257--4263 \T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [1797] Underfull \hbox (badness 5726) in paragraph at lines 4337--4342 []\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/sl/10 TR UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/sl/10 DependsList \T1/ptm/m/n/10 ob-ject Underfull \hbox (badness 7221) in paragraph at lines 4337--4342 \T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo r in-stance if there was [1798] [1799] Underfull \hbox (badness 2197) in paragraph at lines 4486--4496 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][]\T1/zi4 /m/sl/10 available.packages[][][]\T1/ptm/m/n/10 : Underfull \hbox (badness 2229) in paragraph at lines 4486--4496 \T1/ptm/m/n/10 fields will al-ways be in-cluded, plus the file name in field \T 1/zi4/m/sl/10 "File" \T1/ptm/m/n/10 if [1800] Underfull \hbox (badness 1571) in paragraph at lines 4549--4553 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [1801] [1802] [1803]) (./utils-pkg.tex [1804] Chapter 14. Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ', [1805] [1806] [1807] [1808] [1809] [1810] [1811] [1812] [1813] Underfull \hbox (badness 10000) in paragraph at lines 620--626 []\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1 0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 620--626 \T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the [1814] [1815] Underfull \hbox (badness 5847) in paragraph at lines 753--759 []\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to se-lect which of the pack-ages on the repos-i-to- Underfull \hbox (badness 4229) in paragraph at lines 753--759 \T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi 4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as Underfull \hbox (badness 3861) in paragraph at lines 821--826 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/ 10 "License_is_FOSS"\T1/ptm/m/n/10 , [1816] [1817] [1818] Underfull \hbox (badness 1430) in paragraph at lines 992--999 \T1/ptm/m/n/10 in-di-cat-ing that the bib-tex code should be given in ad-di-tio n to the for- Underfull \hbox (badness 1931) in paragraph at lines 992--999 \T1/ptm/m/n/10 mat-ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not mo re than $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is Underfull \hbox (badness 1038) in paragraph at lines 992--999 \T1/ptm/m/n/10 taken as [][]\T1/zi4/m/sl/10 getOption[][][]("citation.bibtex.ma x", 1) \T1/ptm/m/n/10 which is \T1/zi4/m/sl/10 1 \T1/ptm/m/n/10 typ-i-cally. Underfull \hbox (badness 1817) in paragraph at lines 992--999 \T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f ault by Underfull \hbox (badness 10000) in paragraph at lines 1003--1005 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [1819] [1820] [1821] [1822] [1823] [1824] [1825] Underfull \hbox (badness 1371) in paragraph at lines 1482--1484 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [1826] [1827] [1828] [1829] [1830] [1831] [1832] Underfull \hbox (badness 2057) in paragraph at lines 1959--1961 []\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th is func-tion is in-voked for its side ef-fect of up-dat-ing [1833] [1834] Underfull \hbox (badness 10000) in paragraph at lines 2054--2056 []\T1/ptm/m/n/10 One can in-clude an auto-generated pack-age ci-ta-tion in the `\T1/zi4/m/sl/10 CITATION\T1/ptm/m/n/10 ' file via [1835] Underfull \hbox (badness 5189) in paragraph at lines 2156--2158 []\T1/ptm/m/n/10 A list of keys that have been pre-vi-ously cited, to be used w hen [1836] [1837] [1838] Underfull \hbox (badness 1661) in paragraph at lines 2374--2381 []\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sim-pli-fied to an [][]\T1/zi4/m/sl/10 array[][][] \T1/ptm/m/n/10 (typ-i- [1839] Underfull \hbox (badness 1748) in paragraph at lines 2390--2393 []\T1/ptm/m/n/10 A [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4 /m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m /n/10 ar-gu-ment above. In the lat-ter case, the iden-tity [1840] [1841] [1842] [1843] [1844] [1845] Underfull \hbox (badness 10000) in paragraph at lines 2800--2804 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/sl/10 .tab\T1/ptm/m/n/10 ', `\T1/zi4/ m/sl/10 .txt\T1/ptm/m/n/10 ' or `\T1/zi4/m/sl/10 .TXT\T1/ptm/m/n/10 ' are read us-ing Overfull \hbox (59.4187pt too wide) in paragraph at lines 2805--2808 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/sl/10 .csv\T1/ptm/m/n/10 ' or `\T1/zi 4/m/sl/10 .CSV\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/sl/10 read.table[] [][](..., header = TRUE, sep = ";", as.is=FALSE)\T1/ptm/m/n/10 , [1846] [1847] [1848] [1849] [1850] [1851] [1852] [1853] [1854] Underfull \hbox (badness 1430) in paragraph at lines 3484--3492 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the Underfull \hbox (badness 1231) in paragraph at lines 3533--3539 []\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers via en-vi-ron-ment vari-able [1855] [1856] Underfull \hbox (badness 10000) in paragraph at lines 3686--3688 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][]\T1/zi4/m/sl/10 dow nload.file[][][] \T1/ptm/m/n/10 and [1857] [1858] [1859] [1860] [1861] [1862] [1863] [1864] [1865] [1866] [1867]pdf TeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.4373 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.format.1}) has been already used, dupl icate ignored \relax l.4373 ...mat Unordered and Ordered Lists}{format} [1868] [1869] [1870] [1871] [1872] [1873] [1874] [1875] [1876] [1877] [1878] [1879] [1880] [1881] [1882] Underfull \hbox (badness 1371) in paragraph at lines 5370--5372 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [1883] Underfull \hbox (badness 1502) in paragraph at lines 5459--5464 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 5459--5464 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [1884] [1885] [1886] Underfull \hbox (badness 10000) in paragraph at lines 5632--5641 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, [1887] Underfull \hbox (badness 2150) in paragraph at lines 5695--5698 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [1888] [1889] Underfull \hbox (badness 3118) in paragraph at lines 5832--5834 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for Underfull \hbox (badness 2409) in paragraph at lines 5865--5869 []\T1/ptm/m/n/10 To in-stall a source pack-age with com-piled code only for the sub-architecture used by [1890] Underfull \hbox (badness 1325) in paragraph at lines 5973--5977 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/sl/10 available.packag es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able [1891] Underfull \hbox (badness 10000) in paragraph at lines 6056--6059 []\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to be passed Underfull \hbox (badness 10000) in paragraph at lines 6056--6059 \T1/ptm/m/n/10 to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a source pac k-age in-stall. E.g., [1892] Underfull \hbox (badness 3219) in paragraph at lines 6129--6136 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/sl/ 10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 6129--6136 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 6129--6136 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by [1893] Underfull \hbox (badness 10000) in paragraph at lines 6229--6234 [][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/ 10 , [1894] [1895] [1896] [1897] [1898] [1899] [1900] [1901] [1902] [1903] [1904] [1905] [1906] [1907] [1908] [1909] [1910] [1911] [1912] Underfull \vbox (badness 3029) has occurred while \output is active [1913] [1914] [1915] [1916] Underfull \hbox (badness 10000) in paragraph at lines 7662--7664 []\T1/ptm/m/n/10 for \T1/zi4/m/sl/10 asDateBuilt()\T1/ptm/m/n/10 , a [][]\T1/zi 4/m/sl/10 character[][][] \T1/ptm/m/n/10 string as from Underfull \hbox (badness 10000) in paragraph at lines 7676--7678 []\T1/zi4/m/sl/10 packageVersion() \T1/ptm/m/n/10 is a con-ve-nience short-cut, al-low-ing things like Underfull \hbox (badness 2310) in paragraph at lines 7684--7689 []\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [1917] [1918] [1919] [1920] [1921] [1922] [1923] [1924] Underfull \hbox (badness 1789) in paragraph at lines 8278--8280 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [1925] [1926] [1927] [1928] [1929] [1930] [1931] [1932] [1933] Underfull \vbox (badness 5533) has occurred while \output is active [1934] [1935] [1936] Underfull \hbox (badness 1097) in paragraph at lines 9111--9114 []\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b e used on Win-dows, in which case [1937] [1938] Underfull \hbox (badness 3000) in paragraph at lines 9247--9252 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t able[][][]\T1/ptm/m/n/10 ; [1939] [1940] [1941] [1942] [1943] [1944] [1945] [1946] Underfull \hbox (badness 2134) in paragraph at lines 9830--9835 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write. table[][][]\T1/ptm/m/n/10 ; [1947] [1948] [1949] [1950] [1951] [1952] Underfull \hbox (badness 5077) in paragraph at lines 10255--10259 []\T1/zi4/m/sl/10 as.roman \T1/ptm/m/n/10 cre-ates ob-jects of class \T1/zi4/m/ sl/10 "roman" \T1/ptm/m/n/10 which are in-ter-nally rep-re-sented as in-te- Underfull \hbox (badness 2269) in paragraph at lines 10255--10259 \T1/ptm/m/n/10 gers, and have suit-able meth-ods for print-ing, for-mat-ting, s ub-set-ting, co-er-cion, etc, see Underfull \hbox (badness 2469) in paragraph at lines 10267--10271 []\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia , The Free En-cy-clo-pe-dia. Underfull \hbox (badness 3428) in paragraph at lines 10267--10271 [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / w / index . php ? title = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac- [1953] [1954] [1955] [1956] Underfull \hbox (badness 4060) in paragraph at lines 10544--10547 []\T1/ptm/m/n/10 If `\T1/zi4/m/sl/10 --default-packages\T1/ptm/m/n/10 ' is not used, then \T1/zi4/m/sl/10 Rscript \T1/ptm/m/n/10 checks the en-vi-ron-ment var i-able [1957] Overfull \hbox (18.77168pt too wide) in paragraph at lines 10567--10567 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] [1958] Underfull \hbox (badness 10000) in paragraph at lines 10630--10632 []\T1/ptm/m/n/10 For \T1/zi4/m/sl/10 type = "txt"\T1/ptm/m/n/10 , [][]\T1/zi4/m /sl/10 file.show[][][] \T1/ptm/m/n/10 is used. [][]\T1/zi4/m/sl/10 vignette[][] []\T1/ptm/m/n/10 s are nicely viewed via [1959] [1960] Underfull \hbox (badness 2150) in paragraph at lines 10806--10808 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac s / manual / [1961] [1962] [1963] [1964] Underfull \hbox (badness 10000) in paragraph at lines 11025--11029 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n ow taken from the en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 11056--11062 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a [1965] Underfull \hbox (badness 2096) in paragraph at lines 11174--11177 []\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing whether PNG fig-ures should be gen-er-ated. Ig-nored if Underfull \hbox (badness 1527) in paragraph at lines 11178--11181 []\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing whether JPEG fig-ures should be gen-er-ated. Ig-nored if [1966] Underfull \hbox (badness 1009) in paragraph at lines 11250--11261 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If [1967] [1968] [1969] [1970] [1971] Underfull \hbox (badness 3780) in paragraph at lines 11556--11560 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1 /zi4/m/sl/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via Underfull \hbox (badness 2635) in paragraph at lines 11572--11575 []\T1/ptm/m/n/10 Repository `\T1/zi4/m/sl/10 CRAN\T1/ptm/m/n/10 ' is treated sp e-cially: the value is taken from the cur-rent set-ting of [1972] [1973] [1974] [1975] [1976] [1977] Underfull \hbox (badness 2818) in paragraph at lines 11941--11946 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 (de-fault), [] []\T1/zi4/m/sl/10 deparse[][][](control = ) \T1/ptm/m/n/10 will not have Underfull \hbox (badness 5970) in paragraph at lines 11950--11953 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive [1978] [1979] [1980] [1981] Underfull \hbox (badness 10000) in paragraph at lines 12213--12215 []\T1/ptm/m/n/10 Options other than \T1/zi4/m/sl/10 memory = "none" \T1/ptm/m/n /10 ap-ply only to files pro-duced by [1982] [1983] Underfull \hbox (badness 1057) in paragraph at lines 12370--12377 []\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 syntax = NULL \T1/ptm/m/n/10 (the de-fault) then the avail-able syn-tax ob-jects are con-sulted in turn, [1984] [1985] [1986] [1987] Underfull \hbox (badness 6510) in paragraph at lines 12642--12646 []\T1/ptm/m/n/10 When ar-gu-ment \T1/zi4/m/sl/10 tar \T1/ptm/m/n/10 is set to t he com-mand \T1/zi4/m/sl/10 tar \T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment vari-a ble Underfull \hbox (badness 10000) in paragraph at lines 12649--12652 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 12649--12652 \T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [1988] [1989] [1990] [1991] [1992] [1993] [1994] [1995] [1996] Underfull \hbox (badness 10000) in paragraph at lines 13238--13243 []\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/sl/10 destdir \T1/ptm/m/n/10 and \ T1/zi4/m/sl/10 dependencies \T1/ptm/m/n/10 to be passed to Underfull \hbox (badness 3861) in paragraph at lines 13238--13243 [][]\T1/zi4/m/sl/10 install.packages[][][] \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 i gnore_repo_cache\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 max_repo_cache_age \T1/ptm/m/n /10 and Underfull \hbox (badness 1052) in paragraph at lines 13244--13246 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See Underfull \hbox (badness 10000) in paragraph at lines 13274--13279 []\T1/ptm/m/n/10 For how the list of suit-able avail-able pack-ages is de-ter-m ined see Underfull \hbox (badness 10000) in paragraph at lines 13274--13279 [][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 . \T1/zi4/m/sl/10 av ailable = NULL \T1/ptm/m/n/10 make a call to Underfull \hbox (badness 1297) in paragraph at lines 13274--13279 \T1/zi4/m/sl/10 available.packages(contriburl = contriburl, method = method) \T 1/ptm/m/n/10 and hence by [1997] Underfull \hbox (badness 10000) in paragraph at lines 13303--13306 [][][]\T1/zi4/m/sl/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.package s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n /10 , [1998] [1999] [2000] Overfull \hbox (23.85939pt too wide) in paragraph at lines 13545--13548 [][][]\T1/zi4/m/sl/10 browseVignettes[][][] \T1/ptm/m/n/10 for an HTML-based vi -gnette browser; [][]\T1/zi4/m/sl/10 RShowDoc[][][](, package = "") [2001] [2002] [2003] Underfull \hbox (badness 1454) in paragraph at lines 13696--13700 []\T1/ptm/m/n/10 the char-ac-ter(s) to print at the end of each line (row). For ex-am-ple, [2004] Underfull \hbox (badness 10000) in paragraph at lines 13766--13768 []\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec- tion [2005] [2006] [2007]) [2008] [2009] [2010] (./KernSmooth-pkg.tex Chapter 15. [2011] [2012] [2013] [2014] [2015] [2016] [2017] [2018] [2019] [2020]) (./MASS-pkg.tex Chapter 16. [2021] [2022] [2023] [2024] [2025] [2026] [2027] [2028] [2029] [2030] [2031] [2032] [2033] [2034] [2035] [2036] [2037] [2038] [2039] [2040] [2041] [2042] Underfull \hbox (badness 7256) in paragraph at lines 1603--1605 []\T1/ptm/m/n/10 logical. If true and the re-sult would be sparse (only true fo r [2043] [2044] [2045] [2046] [2047] [2048] [2049] [2050] [2051] [2052] [2053] [2054] [2055] [2056] [2057] Underfull \hbox (badness 7944) in paragraph at lines 2693--2696 []\T1/ptm/m/n/10 further ar-gu-ments for \T1/zi4/m/sl/10 plot \T1/ptm/m/n/10 an d graph-i-cal pa-ram-e-ters. Note that [2058] [2059] [2060] Underfull \hbox (badness 10000) in paragraph at lines 2863--2868 []\T1/ptm/m/n/10 Distributions \T1/zi4/m/sl/10 "beta"\T1/ptm/m/n/10 , \T1/zi4/m /sl/10 "cauchy"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "chi-squared"\T1/ptm/m/n/10 , \ T1/zi4/m/sl/10 "exponential"\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2863--2868 \T1/zi4/m/sl/10 "gamma"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "geometric"\T1/ptm/m/n/ 10 , \T1/zi4/m/sl/10 "log-normal"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "lognormal"\T 1/ptm/m/n/10 , \T1/zi4/m/sl/10 "logistic"\T1/ptm/m/n/10 , Underfull \hbox (badness 1184) in paragraph at lines 2863--2868 \T1/zi4/m/sl/10 "negative binomial"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "normal"\T1 /ptm/m/n/10 , \T1/zi4/m/sl/10 "Poisson"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "t" \T1 /ptm/m/n/10 and \T1/zi4/m/sl/10 "weibull" \T1/ptm/m/n/10 are [2061] [2062] Underfull \hbox (badness 4686) in paragraph at lines 3031--3033 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds Underfull \hbox (badness 2591) in paragraph at lines 3045--3049 []\T1/ptm/m/n/10 where \T1/zi4/m/sl/10 p1\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 p2\T1 /ptm/m/n/10 , ...are pos-i-tive in-te-gers, ter-mi-nat-ing ei-ther at \T1/zi4/m /sl/10 cycles \T1/ptm/m/n/10 terms or when a [2063] [2064] [2065] Underfull \hbox (badness 10000) in paragraph at lines 3233--3235 []\T1/ptm/m/n/10 Fitted model ob-ject from a \T1/zi4/m/sl/10 Gamma \T1/ptm/m/n/ 10 fam-ily or \T1/zi4/m/sl/10 quasi \T1/ptm/m/n/10 fam-ily with [2066] [2067] [2068] [2069] [2070] [2071] [2072] [2073] [2074] [2075] [2076] [2077] [2078] [2079] [2080] [2081] [2082] [2083] [2084] [2085] [2086] [2087] Underfull \hbox (badness 10000) in paragraph at lines 4810--4813 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm [2088] Underfull \hbox (badness 10000) in paragraph at lines 4888--4891 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm [2089] [2090] [2091] [2092] [2093] [2094] Underfull \hbox (badness 1975) in paragraph at lines 5341--5343 []\T1/ptm/m/n/10 the value of the cri-te-rion for the best so-lu-tion found, in the case of [2095] [2096] [2097] [2098] [2099] [2100] [2101] [2102] [2103] [2104] [2105]pdf TeX warning (ext4): destination with the same identifier (name{Rfn.npk}) has be en already used, duplicate ignored \relax l.6130 ...sical N, P, K Factorial Experiment}{npk} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.npk.1}) has been already used, duplica te ignored \relax l.6130 ...sical N, P, K Factorial Experiment}{npk} [2106] Underfull \hbox (badness 1931) in paragraph at lines 6248--6252 []\T1/ptm/m/n/10 Given a ma-trix, \T1/zi4/m/sl/10 M\T1/ptm/m/n/10 , find a ma-t rix \T1/zi4/m/sl/10 N \T1/ptm/m/n/10 giv-ing a ba-sis for the (left) null space . That is [2107] [2108] [2109] [2110] Underfull \vbox (badness 10000) has occurred while \output is active [2111] [2112] [2113] [2114] [2115] [2116] [2117] [2118] Underfull \hbox (badness 10000) in paragraph at lines 7097--7104 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm [2119] Underfull \hbox (badness 3138) in paragraph at lines 7168--7174 []\T1/ptm/m/n/10 The log-log and com-ple-men-tary log-log links are the in-crea s-ing func-tions $\OML/cmm/m/it/10 F[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 p\OT1/c mr/m/n/10 ) = [2120] [2121] [2122] Underfull \hbox (badness 6775) in paragraph at lines 7347--7350 \T1/ptm/m/n/10 only the first \T1/zi4/m/sl/10 dimen \T1/ptm/m/n/10 dis-crim-i-n ant com-po-nents are used (ex-cept for [2123] [2124] [2125] [2126] [2127] [2128] [2129] [2130] [2131] Underfull \hbox (badness 4686) in paragraph at lines 7980--7982 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds Underfull \hbox (badness 2591) in paragraph at lines 7996--8000 []\T1/ptm/m/n/10 where \T1/zi4/m/sl/10 p1\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 p2\T1 /ptm/m/n/10 , ...are pos-i-tive in-te-gers, ter-mi-nat-ing ei-ther at \T1/zi4/m /sl/10 cycles \T1/ptm/m/n/10 terms or when a [2132] [2133] [2134] [2135] [2136] [2137] [2138] [2139] [2140] [2141] [2142] [2143] [2144] [2145] [2146] [2147] [2148] [2149] [2150] Underfull \hbox (badness 1259) in paragraph at lines 9380--9382 []\T1/ptm/m/n/10 if \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 re-turn ob-served and e x-pected fre-quen-cies in the re-sult. Us-ing [2151] [2152] [2153] [2154] [2155] [2156] [2157] [2158] [2159] [2160] [2161] [2162] [2163] [2164] [2165] [2166] [2167] [2168]) (./Matrix-pkg.tex Chapter 17. Underfull \hbox (badness 10000) in paragraph at lines 41--44 []\T1/ptm/m/n/10 Note that the cur-rent im-ple-men-ta-tion de-tails are sub-jec t to change, and if you Underfull \hbox (badness 10000) in paragraph at lines 41--44 \T1/ptm/m/n/10 con-sider work-ing with these classes, please con-tact the pack- age main-tain-ers [2169] Underfull \hbox (badness 1769) in paragraph at lines 95--98 []\T1/ptm/m/n/10 This is cur-rently ex-per-i-men-tal and not yet used for our o wn code. Please con-tact us [2170] [2171] [2172] [2173] Underfull \hbox (badness 5119) in paragraph at lines 508--512 []\T1/ptm/m/n/10 logical; if true the re-sult will be sym-met-ric (in-her-it-in g from class [2174] [2175] Underfull \hbox (badness 2418) in paragraph at lines 597--600 []\T1/ptm/m/n/10 The value of \T1/zi4/m/sl/10 bdiag() \T1/ptm/m/n/10 in-heris f rom class [][]\T1/zi4/m/sl/10 CsparseMatrix[][][]\T1/ptm/m/n/10 , whereas \T1/z i4/m/sl/10 .bdiag() \T1/ptm/m/n/10 re-turns a [2176] [2177] [2178] [2179] [2180] Underfull \hbox (badness 2564) in paragraph at lines 1022--1024 []\T1/zi4/m/sl/10 signature(from = "CHMfactor", to = "sparseMatrix") \T1/ptm/m/ n/10 (or equiv-a-lently, [2181] [2182]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.chol}) has been already used, duplicate ignored \relax l.1134 ...- 'Matrix' S4 Generic and Methods}{chol} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.chol.1}) has been already used, duplic ate ignored \relax l.1134 ...- 'Matrix' S4 Generic and Methods}{chol} [2183pdfTeX warning (ext4): destination with the same identifier (name{Rfn.chol,dsCMatrix.Rdash.method}) ha s been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.1209 \item[chol] \code{signature(x = "dgeMatrix")}: works viapdfTeX warning ( ext4): destination with the same identifier (name{Rfn.chol,lsCMatrix.Rdash.meth od}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.1209 \item[chol] \code{signature(x = "dgeMatrix")}: works viapdfTeX warning ( ext4): destination with the same identifier (name{Rfn.chol,nsCMatrix.Rdash.meth od}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.1209 \item[chol] \code{signature(x = "dgeMatrix")}: works via] [2184] [2185] Underfull \hbox (badness 2277) in paragraph at lines 1388--1391 []\T1/ptm/m/n/10 This is a generic func-tion with spe-cial meth-ods for dif-fer -ent types of ma-tri-ces. Use Underfull \hbox (badness 5741) in paragraph at lines 1435--1439 []\T1/ptm/m/n/10 Class def-i-ni-tions [][]\T1/zi4/m/sl/10 CHMfactor[][][] \T1/p tm/m/n/10 and [][]\T1/zi4/m/sl/10 dsCMatrix[][][] \T1/ptm/m/n/10 and func-tion [][]\T1/zi4/m/sl/10 expand[][][]\T1/ptm/m/n/10 . Note the ex-tra [2186] [2187] Underfull \hbox (badness 3930) in paragraph at lines 1531--1538 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/sl/10 n ew("Cholesky", ...) \T1/ptm/m/n/10 or Underfull \hbox (badness 1097) in paragraph at lines 1560--1563 []\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "MatrixFactorization" \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 "dtrMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi4/m/sl/10 " dgeMatrix"\T1/ptm/m/n/10 , by class Underfull \hbox (badness 1783) in paragraph at lines 1566--1570 []\T1/ptm/m/n/10 Both these fac-tor-iza-tions can \T1/ptm/m/it/10 di-rectly \T1 /ptm/m/n/10 be treated as (tri-an-gu-lar) ma-tri-ces, as they ex-tend [2188]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.col Sums}) has been already used, duplicate ignored \relax l.1623 ... Row and Column Sums and Means}{colSums} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.colSums.1}) has been already used, dup licate ignored \relax l.1623 ... Row and Column Sums and Means}{colSums} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.colMeans}) has been already used, dupl icate ignored \relax l.1624 \aliasA{colMeans}{colSums}{colMeans} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.rowMeans}) has been already used, duplicate i gnored \relax l.1645 \aliasA{rowMeans}{colSums}{rowMeans} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.rowSums}) has been already used, duplicate ig nored \relax l.1656 \aliasA{rowSums}{colSums}{rowSums} [2189] [2190] [2191] Underfull \hbox (badness 3547) in paragraph at lines 1875--1878 []\T1/ptm/m/n/10 a num-ber $\OML/cmm/m/it/10 > \OT1/cmr/m/n/10 0$\T1/ptm/m/n/10 , the es-ti-mated (1-norm) con-di-tion num-ber $[]$; when [2192] [2193] [2194] [2195] [2196] [2197] [2198] [2199] [2200] Underfull \hbox (badness 2368) in paragraph at lines 2610--2614 []\T1/ptm/m/n/10 However this means that a ma-trix typ-i-cally can tbe stored i n more than one pos-si-ble [2201] [2202] Underfull \hbox (badness 6842) in paragraph at lines 2700--2703 []\T1/zi4/m/sl/10 Diagonal() \T1/ptm/m/n/10 re-turns an ob-ject of class [][]\T 1/zi4/m/sl/10 ddiMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/sl/10 ldiMatrix[] [][] \T1/ptm/m/n/10 (with ``su-per-class'' [2203] Underfull \hbox (badness 10000) in paragraph at lines 2983--2985 []\T1/zi4/m/sl/10 signature(x = "nMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equi v-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion Underfull \hbox (badness 7814) in paragraph at lines 2986--2990 []\T1/zi4/m/sl/10 signature(x = "diagonalMatrix")\T1/ptm/m/n/10 : all these gro up meth-ods re-turn a [2204] [2205] [2206] Underfull \hbox (badness 10000) in paragraph at lines 3243--3245 [][][]\T1/zi4/m/sl/10 drop0[][][](x, tol=1e-10) \T1/ptm/m/n/10 is some-times pr efer-able to (and more ef-fi-cient than) [2207] [2208] [2209] Underfull \hbox (badness 3343) in paragraph at lines 3528--3532 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/sl/10 n ew("dsCMatrix", ...) \T1/ptm/m/n/10 or [2210] [2211] [2212] [2213] Underfull \hbox (badness 3343) in paragraph at lines 3813--3815 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/sl/10 n ew("dsyMatrix", ...) \T1/ptm/m/n/10 or [2214] [2215] Underfull \hbox (badness 2318) in paragraph at lines 3969--3973 []\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "dgCMatrix"\T1/ptm/m/n/10 , di-rectly. C lass \T1/zi4/m/sl/10 "triangularMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi 4/m/sl/10 "dMatrix"\T1/ptm/m/n/10 , [2216] [2217] [2218] [2219] [2220] Underfull \hbox (badness 10000) in paragraph at lines 4393--4398 []\T1/ptm/m/n/10 The ex-po-nen-tial of a ma-trix is de-fined as the in-fi-nite Tay-lor se-ries [2221] [2222] [2223] Overfull \hbox (3.77782pt too wide) in paragraph at lines 4527--4527 [] \T1/zi4/m/n/9 readHB(gzcon(url("http://www.cise.ufl.edu/research/sparse/RB/ Boeing/msc00726.tar.gz"))))[] Overfull \hbox (48.77782pt too wide) in paragraph at lines 4530--4530 [] \T1/zi4/m/n/9 readMM(gzcon(url("ftp://math.nist.gov/pub/MatrixMarket2/Harwe ll-Boeing/counterx/jgl009.mtx.gz"))))[] [2224] [2225] Underfull \hbox (badness 1931) in paragraph at lines 4759--4761 []\T1/ptm/m/n/10 a string spec-i-fy-ing how the \T1/zi4/m/sl/10 zero.print \T1/ ptm/m/n/10 codes should be aligned, see [2226] [2227] [2228] [2229] [2230] Underfull \hbox (badness 5862) in paragraph at lines 5079--5082 []\T1/ptm/m/n/10 All meth-ods cur-rently end up call-ing the method for the [][ ]\T1/zi4/m/sl/10 dgTMatrix[][][] \T1/ptm/m/n/10 class. Use [2231] [2232] Underfull \hbox (badness 3229) in paragraph at lines 5220--5229 []\T1/ptm/m/n/10 While ``row-indexing'' (of more than one row \T1/ptm/m/it/10 o r \T1/ptm/m/n/10 us-ing \T1/zi4/m/sl/10 drop=FALSE\T1/ptm/m/n/10 ) stays within the Underfull \hbox (badness 3942) in paragraph at lines 5262--5264 []\T1/zi4/m/sl/10 signature(x = "matrix", y = "indMatrix") \T1/ptm/m/n/10 and o ther sig-na-tures (use [2233] [2234] Underfull \hbox (badness 2846) in paragraph at lines 5376--5378 []\T1/ptm/m/n/10 logical in-di-cat-ing if \T1/zi4/m/sl/10 p \T1/ptm/m/n/10 con- tains val-ues \T1/zi4/m/sl/10 0:(n-1) \T1/ptm/m/n/10 or rather (by de-fault, [2235] [2236] [2237] Underfull \hbox (badness 1014) in paragraph at lines 5654--5657 []\T1/zi4/m/sl/10 isTriangular(M) \T1/ptm/m/n/10 re-turns a [][]\T1/zi4/m/sl/10 logical[][][] \T1/ptm/m/n/10 in-di-cat-ing if \T1/zi4/m/sl/10 M \T1/ptm/m/n/10 is a tri-an-gu-lar ma-trix. Anal-o-gously, [2238] [2239] [2240] [2241] [2242] Underfull \hbox (badness 6944) in paragraph at lines 5969--5972 []\T1/zi4/m/sl/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2243] Underfull \hbox (badness 2478) in paragraph at lines 6081--6086 []\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "ldenseMatrix"\T1/ptm/m/n/10 , di-rectly . Class \T1/zi4/m/sl/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/sl/10 "lde nseMatrix"\T1/ptm/m/n/10 . Class [2244] Underfull \hbox (badness 10000) in paragraph at lines 6089--6092 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ); use, e.g., [2245] Underfull \hbox (badness 5161) in paragraph at lines 6281--6284 []\T1/zi4/m/sl/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2246] Underfull \hbox (badness 10000) in paragraph at lines 6379--6382 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2247] Underfull \hbox (badness 10000) in paragraph at lines 6454--6457 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2248] Underfull \hbox (badness 2050) in paragraph at lines 6530--6533 []\T1/zi4/m/sl/10 lu() \T1/ptm/m/n/10 is a generic func-tion with spe-cial meth -ods for dif-fer-ent types of ma-tri-ces. Use [2249] [2250] [2251] Underfull \hbox (badness 6268) in paragraph at lines 6736--6739 []\T1/ptm/m/n/10 Note that when the re-sult-ing ma-trix is di-ag-o-nal (``math- e-mat-i-cally''), [2252] Underfull \hbox (badness 6268) in paragraph at lines 6760--6764 []\T1/ptm/m/n/10 Most of the time, the func-tion works via a tra-di-tional (\T1 /ptm/m/it/10 full\T1/ptm/m/n/10 ) [][]\T1/zi4/m/sl/10 matrix[][][]\T1/ptm/m/n/1 0 . How-ever, [2253]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.det }) has been already used, duplicate ignored \relax l.6853 \aliasA{det}{Matrix-class}{det} Underfull \hbox (badness 1412) in paragraph at lines 6951--6954 []\T1/zi4/m/sl/10 signature(object = "Matrix")\T1/ptm/m/n/10 : draws an [][]\T1 /zi4/m/sl/10 image[][][] \T1/ptm/m/n/10 of the ma-trix en-tries, us-ing Underfull \hbox (badness 10000) in paragraph at lines 6956--6959 [2254]pdfTeX warning (ext4): destination with the same identifier (name{Rfn..Rp cent.*.Rpcent.}) has been already used, duplicate ignored \relax l.7029 ...*\%}{matrix-products}{.Rpcent.*.Rpcent.} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.crossprod}) has been already used, dup licate ignored \relax l.7137 ...A{crossprod}{matrix-products}{crossprod} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.tcrossprod}) has been already used, du plicate ignored \relax l.7237 ...tcrossprod}{matrix-products}{tcrossprod} [2255pdfTeX warning (ext4): destination with the same identifier (name{Rfn.crossprod.Rdash.methods}) has be en already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.7341 pdfTeX warning (ext4): destination with the same identifier (name{Rfn.tc rossprod.Rdash.methods}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.7341 ] [2256] Underfull \hbox (badness 3942) in paragraph at lines 7411--7416 []\T1/zi4/m/sl/10 signature(x = "dtrMatrix", y = "matrix") \T1/ptm/m/n/10 and o ther sig-na-tures (use [2257] [2258] Underfull \hbox (badness 1237) in paragraph at lines 7562--7564 []\T1/zi4/m/sl/10 signature(a = "MatrixFactorization", b= .)\T1/ptm/m/n/10 : so lve $\OML/cmm/m/it/10 Ax \OT1/cmr/m/n/10 = \OML/cmm/m/it/10 b$ \T1/ptm/m/n/10 f or $\OML/cmm/m/it/10 x$\T1/ptm/m/n/10 ; see Underfull \hbox (badness 1430) in paragraph at lines 7570--7575 []\T1/ptm/m/n/10 classes in-her-it-ing from \T1/zi4/m/sl/10 "MatrixFactorizatio n"\T1/ptm/m/n/10 , such as [][]\T1/zi4/m/sl/10 LU[][][]\T1/ptm/m/n/10 , [][]\T1 /zi4/m/sl/10 Cholesky[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 CHMfactor[][][] \T1/ptm/m/n/10 , and [2259] Underfull \hbox (badness 6944) in paragraph at lines 7641--7644 []\T1/zi4/m/sl/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2260] Underfull \hbox (badness 3118) in paragraph at lines 7693--7695 []\T1/ptm/m/n/10 logical in-di-cat-ing if \T1/zi4/m/sl/10 X <- (X + t(X))/2 \T1 /ptm/m/n/10 should be done, af-ter [2261] [2262] Underfull \vbox (badness 10000) has occurred while \output is active [2263] Underfull \hbox (badness 2478) in paragraph at lines 7896--7901 []\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "ndenseMatrix"\T1/ptm/m/n/10 , di-rectly . Class \T1/zi4/m/sl/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/sl/10 "nde nseMatrix"\T1/ptm/m/n/10 . Class Underfull \hbox (badness 10000) in paragraph at lines 7904--7907 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ); use, e.g., [2264] [2265] [2266]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.norm}) has been already used, duplicate ignored \relax l.8138 \HeaderA{norm}{Matrix Norms}{norm} pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.norm.1}) has been already used, duplicate ignor ed \relax l.8138 \HeaderA{norm}{Matrix Norms}{norm} [2267] [2268] Underfull \hbox (badness 5161) in paragraph at lines 8411--8414 []\T1/zi4/m/sl/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2269] Underfull \hbox (badness 10000) in paragraph at lines 8501--8504 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2270] Underfull \hbox (badness 10000) in paragraph at lines 8577--8580 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2271] Underfull \vbox (badness 10000) has occurred while \output is active [2272] Underfull \hbox (badness 6141) in paragraph at lines 8703--8705 []\T1/zi4/m/sl/10 signature(x = "matrix", y = "pMatrix") \T1/ptm/m/n/10 and oth er sig-na-tures (use [2273] [2274] [2275] [2276]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.qr}) has been already used, duplicate ignored \relax l.8938 \aliasA{qr}{qr-methods}{qr} Underfull \hbox (badness 5119) in paragraph at lines 8984--8987 []\T1/ptm/m/n/10 QR de-com-po-si-tion of a gen-eral sparse double-precision ma- trix with [2277] [2278] Underfull \hbox (badness 10000) in paragraph at lines 9104--9110 []\T1/ptm/m/n/10 for a dense ma-trix, this is the rank of [2279] [2280]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.rcond}) has been already used, duplicate ignored \relax l.9234 ... the Reciprocal Condition Number}{rcond} [2281] [2282] [2283] [2284] [2285] [2286] [2287] [2288]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.solve}) has been already used, duplicate ignored \relax l.9811 \aliasA{solve}{solve-methods}{solve} [2289] Underfull \hbox (badness 10000) in paragraph at lines 9948--9960 []\T1/ptm/m/n/10 The \T1/zi4/m/sl/10 solve \T1/ptm/m/n/10 meth-ods for a Underfull \hbox (badness 10000) in paragraph at lines 9974--9981 []\T1/ptm/m/n/10 with ex-tra ar-gu-ment list Underfull \hbox (badness 10000) in paragraph at lines 9987--9997 []\T1/ptm/m/n/10 with ex-tra ar-gu-ment list Underfull \hbox (badness 1122) in paragraph at lines 10021--10023 []\T1/ptm/m/n/10 all end up call-ing LA-PACK rou-tines \T1/zi4/m/sl/10 dsptri\T 1/ptm/m/n/10 , [2290] Underfull \hbox (badness 1210) in paragraph at lines 10035--10038 []\T1/ptm/m/n/10 , and sim-i-lar \T1/zi4/m/sl/10 b\T1/ptm/m/n/10 , in-clud-ing \T1/zi4/m/sl/10 "missing"\T1/ptm/m/n/10 , and Underfull \hbox (badness 10000) in paragraph at lines 10105--10108 []\T1/ptm/m/n/10 Construct a sparse model or ``de-sign'' ma-trix, form a for-mu la and data frame [2291] Underfull \hbox (badness 10000) in paragraph at lines 10141--10144 []\T1/ptm/m/n/10 character string or \T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or (co -er-ca-ble to) Underfull \hbox (badness 10000) in paragraph at lines 10152--10156 []\T1/ptm/m/n/10 should fac-tors have un-used lev-els dropped? The de-fault for [2292] [2293] [2294] [2295] [2296] [2297] [2298] [2299] [2300]pdfTeX warning (e xt4): destination with the same identifier (name{Rfn.qr.Q}) has been already us ed, duplicate ignored \relax l.10806 \aliasA{qr.Q}{sparseQR-class}{qr.Q} [2301] [2302] Underfull \hbox (badness 5036) in paragraph at lines 10992--10994 []\T1/ptm/m/n/10 vector of the non zero en-tries; may be miss-ing in which case a [2303] [2304] Underfull \hbox (badness 10000) in paragraph at lines 11198--11201 []\T1/zi4/m/sl/10 signature(x = "sparseVector") \T1/ptm/m/n/10 re-peat \T1/zi4/ m/sl/10 x\T1/ptm/m/n/10 , with the same ar-gu-ment list [2305] Underfull \vbox (badness 10000) has occurred while \output is active [2306] [2307] [2308] Underfull \hbox (badness 10000) in paragraph at lines 11467--11472 []\T1/ptm/m/n/10 The va-lid-ity checks do not re-quire a sym-met-ric \T1/zi4/m/ sl/10 Dimnames \T1/ptm/m/n/10 slot, so it can be [2309] Underfull \hbox (badness 2057) in paragraph at lines 11547--11549 []\T1/ptm/m/n/10 These are generic func-tions with sev-eral meth-ods for dif-fe r-ent ma-trix classes, use e.g., [2310] [2311] Underfull \hbox (badness 1831) in paragraph at lines 11722--11728 []\T1/ptm/m/n/10 For con-ve-nience, meth-ods for some op-er-a-tions such as \T1 /zi4/m/sl/10 %*% \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 crossprod \T1/ptm/m/n/10 ar e de-fined [2312] Underfull \hbox (badness 1902) in paragraph at lines 11757--11761 []\T1/ptm/m/n/10 Note that \T1/zi4/m/sl/10 new(.)\T1/ptm/m/n/10 , [][]\T1/zi4/m /sl/10 spMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/sl/10 sparseMatrix[][][] \T1/ptm/m/n/10 con-struc-tors for \T1/zi4/m/sl/10 "dgTMatrix" \T1/ptm/m/n/10 (a nd other [2313] [2314] [2315] [2316] [2317] [2318] Underfull \hbox (badness 6910) in paragraph at lines 12270--12272 []\T1/ptm/m/n/10 is cur-rently a sim-ple fall-back [2319] [2320] [2321]) (./boot-pkg.tex [2322] Chapter 18. [2323] [2324] [2325] [2326] [2327] [2328] [2329] [2330] [2331] [2332] Underfull \hbox (badness 5667) in paragraph at lines 797--807 \T1/ptm/m/n/10 or \T1/zi4/m/sl/10 parallel = "snow" \T1/ptm/m/n/10 us-ing the d e-fault clus-ter, a sec-ond ap-proach is used if [2333] Underfull \hbox (badness 1881) in paragraph at lines 824--826 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2334] Underfull \vbox (badness 10000) has occurred while \output is active [2335] [2336] Underfull \hbox (badness 10000) in paragraph at lines 1066--1070 []\T1/ptm/m/n/10 A vec-tor of char-ac-ter strings rep-re-sent-ing the type of i n-ter- Underfull \hbox (badness 10000) in paragraph at lines 1066--1070 \T1/ptm/m/n/10 vals re-quired. The value should be any sub-set of the val-ues [2337] Underfull \hbox (badness 2150) in paragraph at lines 1103--1109 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est. The de-fa ult value is [2338] [2339] [2340] [2341] Underfull \hbox (badness 1571) in paragraph at lines 1443--1445 []\T1/ptm/m/n/10 Rawlings, J.O. (1988) \T1/ptm/m/it/10 Ap-plied Re-gres-sion An al-y-sis\T1/ptm/m/n/10 . Wadsworth and Brooks/Cole Statis- [2342] [2343] [2344] [2345] [2346] [2347] Underfull \hbox (badness 1005) in paragraph at lines 1797--1804 []\T1/ptm/m/n/10 The sim-u-la-tion type. Pos-si-ble types are \T1/zi4/m/sl/10 " ordinary" \T1/ptm/m/n/10 (case re-sam-pling), [2348] [2349] Underfull \vbox (badness 10000) has occurred while \output is active [2350] Underfull \hbox (badness 7379) in paragraph at lines 2081--2083 []\T1/ptm/m/n/10 The length of time (in months) that the res-i-dent spent at Ch an-ning House. [2351] [2352] [2353] [2354] Underfull \hbox (badness 1565) in paragraph at lines 2335--2340 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est on the ori g-i-nal data set [2355] Underfull \hbox (badness 1881) in paragraph at lines 2429--2431 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2356] [2357] Underfull \hbox (badness 2970) in paragraph at lines 2533--2537 []\T1/ptm/m/n/10 The un-bi-ased es-ti-ma-tor uses a mul-ti-plier of \T1/zi4/m/s l/10 n/((n-1)*(n-2)) \T1/ptm/m/n/10 where \T1/zi4/m/sl/10 n \T1/ptm/m/n/10 is t he sam-ple Underfull \hbox (badness 2310) in paragraph at lines 2533--2537 \T1/ptm/m/n/10 size, if \T1/zi4/m/sl/10 unbiased \T1/ptm/m/n/10 is \T1/zi4/m/sl /10 FALSE \T1/ptm/m/n/10 then a mul-ti-plier of \T1/zi4/m/sl/10 1/n \T1/ptm/m/n /10 is used. This is mul-ti-plied by [2358] [2359] [2360] [2361] [2362] [2363] [2364] [2365] [2366] [2367] [2368] [2369] [2370] [2371] [2372] [2373] [2374] [2375] [2376] [2377] [2378] [2379] [2380] Underfull \hbox (badness 10000) in paragraph at lines 4187--4189 []\T1/ptm/m/n/10 The quan-tiles at which the plots are re-quired. The de-fault is [2381] [2382] [2383] Underfull \hbox (badness 2393) in paragraph at lines 4386--4389 []\T1/ptm/m/n/10 The lin-ear ap-prox-i-ma-tion to a boot-strap repli-cate with fre-quency vec-tor \T1/zi4/m/sl/10 f \T1/ptm/m/n/10 is given by [2384] [2385] [2386] [2387] [2388] [2389] [2390] [2391] Underfull \hbox (badness 3000) in paragraph at lines 4956--4959 []\T1/ptm/m/n/10 The in-dex of the statis-tic of in-ter-est within the out-put of a call to [2392] [2393] [2394] [2395] Underfull \hbox (badness 2293) in paragraph at lines 5235--5238 []\T1/ptm/m/n/10 An in-te-ger giv-ing the num-ber of classes to be used in the boot-strap Underfull \hbox (badness 1668) in paragraph at lines 5235--5238 \T1/ptm/m/n/10 his-togram. The de-fault is the in-te-ger be-tween 10 and 100 cl os-est to [2396] [2397] [2398] [2399] [2400] [2401] [2402] [2403] [2404] [2405] [2406] Underfull \hbox (badness 4954) in paragraph at lines 6018--6021 []\T1/ptm/m/n/10 The re-turned value is an ob-ject of class \T1/zi4/m/sl/10 "sa ddle.distn"\T1/ptm/m/n/10 . See the help file for [2407] [2408] [2409] [2410] [2411] [2412] [2413] [2414] [2415] Underfull \hbox (badness 1596) in paragraph at lines 6739--6743 []\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sec-ond ar-gu-m ent ex-pected by [2416] [2417] [2418] [2419] [2420] [2421] [2422] [2423] [2424] [2425]) (./class-pkg.tex [2426] Chapter 19. [2427] [2428] [2429] [2430] [2431] [2432] [2433] [2434] Underfull \hbox (badness 10000) in paragraph at lines 608--610 []\T1/ptm/m/n/10 the size of the code-book. De-faults to [2435] [2436] [2437] [2438] [2439] [2440] [2441] [2442]) (./cluster-pkg.tex Chapter 20. [2443] [2444] [2445] [2446] [2447] Underfull \vbox (badness 7777) has occurred while \output is active [2448] [2449] [2450] [2451] [2452] Underfull \hbox (badness 4144) in paragraph at lines 688--691 []\T1/ptm/m/n/10 Setting this to \T1/zi4/m/sl/10 FALSE \T1/ptm/m/n/10 saves mem -ory (and hence time), but dis-ables [2453] [2454] [2455] Underfull \hbox (badness 10000) in paragraph at lines 863--865 []\T1/ptm/m/n/10 list with sil-hou-ette width in-for-ma-tion for the best sam-p le, see [2456] [2457] Underfull \hbox (badness 10000) in paragraph at lines 974--976 []\T1/ptm/m/n/10 simply cor-re-sponds to the global max-i-mum, i.e., is Underfull \hbox (badness 1342) in paragraph at lines 988--992 []\T1/ptm/m/n/10 This, the de-fault, has been pro-posed by Mar-tin Maech-ler in 2012, [2458] [2459] [2460] Underfull \hbox (badness 6110) in paragraph at lines 1182--1186 []\T1/ptm/m/n/10 when \T1/zi4/m/sl/10 x \T1/ptm/m/n/10 does not have a \T1/zi4/ m/sl/10 diss \T1/ptm/m/n/10 nor a \T1/zi4/m/sl/10 data \T1/ptm/m/n/10 com-po-ne nt, e.g., for [2461] [2462] [2463] Underfull \hbox (badness 10000) in paragraph at lines 1451--1454 [2464] [2465] Underfull \hbox (badness 2503) in paragraph at lines 1563--1566 []\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/sl/10 "hclust" \T1/ptm/m/n/10 or \T1/zi4/m/sl/10 "twins"\T1/ptm/m/n/10 , i.e., typ-i-cally the re-sult of [2466] [2467] [2468] [2469] [2470] [2471] [2472] [2473] Underfull \hbox (badness 10000) in paragraph at lines 2154--2157 Underfull \hbox (badness 10000) in paragraph at lines 2168--2174 [][][]\T1/zi4/m/sl/10 predict.ellipsoid[][][] \T1/ptm/m/n/10 which is also the [][]\T1/zi4/m/sl/10 predict[][][] \T1/ptm/m/n/10 method for \T1/zi4/m/sl/10 ell ipsoid \T1/ptm/m/n/10 ob-jects. [2474] [2475] [2476] [2477] Underfull \hbox (badness 6675) in paragraph at lines 2403--2405 []\T1/ptm/m/n/10 list with sil-hou-ette in-for-ma-tion of the near-est crisp cl us-ter-ing, see [2478] [2479] [2480] [2481] [2482] [2483] [2484] Underfull \hbox (badness 2980) in paragraph at lines 2871--2875 [][][]\T1/zi4/m/sl/10 agnes[][][] \T1/ptm/m/n/10 for back-ground and ref-er-enc es; [][]\T1/zi4/m/sl/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 cl ara[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 daisy[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/sl/10 partition.object[][][]\T1/ptm/m/n/10 , [2485] [2486] [2487] [2488] [2489] Underfull \hbox (badness 1142) in paragraph at lines 3212--3215 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/sl/10 par[][][]\T1/ ptm/m/n/10 ) may also be sup-plied and are passed to [2490] [2491] Underfull \hbox (badness 1142) in paragraph at lines 3331--3334 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/sl/10 par[][][]\T1/ ptm/m/n/10 ) may also be sup-plied and are passed to [2492] [2493] [2494] [2495] Underfull \hbox (badness 2582) in paragraph at lines 3554--3559 [][][]\T1/zi4/m/sl/10 partition.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 clusplot.partition[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 clusplot.default [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 pam[][][]\T1/ptm/m/n/10 , [][]\T1/zi 4/m/sl/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 clara[][][]\T1/p tm/m/n/10 , [2496] Underfull \hbox (badness 10000) in paragraph at lines 3616--3621 []\T1/ptm/m/n/10 Note that cur-rently the method func-tion sim-ply calls \T1/zi 4/m/sl/10 plot([][]as.hclust[][][](x), ...)\T1/ptm/m/n/10 , Underfull \hbox (badness 4378) in paragraph at lines 3616--3621 \T1/ptm/m/n/10 which dis-patches to [][]\T1/zi4/m/sl/10 plot.hclust[][][](..)\T 1/ptm/m/n/10 . If more flex-i-ble plots are needed, con-sider [2497] [2498] [2499] [2500] Underfull \hbox (badness 10000) in paragraph at lines 3908--3910 []\T1/ptm/m/n/10 a \T1/zi4/m/sl/10 dissimilarity \T1/ptm/m/n/10 ob-ject or a \T 1/zi4/m/sl/10 summary.dissimilarity \T1/ptm/m/n/10 one for [2501] [2502] [2503] [2504] Underfull \hbox (badness 4108) in paragraph at lines 4132--4137 []\T1/ptm/m/n/10 arguments passed [][]\T1/zi4/m/sl/10 barplot[][][]()\T1/ptm/m/ n/10 ; note that the de-fault used to be \T1/zi4/m/sl/10 col [2505] Underfull \hbox (badness 1383) in paragraph at lines 4210--4215 []\T1/ptm/m/n/10 While \T1/zi4/m/sl/10 silhouette() \T1/ptm/m/n/10 is \T1/ptm/m /it/10 in-trin-sic \T1/ptm/m/n/10 to the [][]\T1/zi4/m/sl/10 partition[][][] \T 1/ptm/m/n/10 clus-ter-ings, and hence has a (triv-ial) [2506] [2507] [2508] [2509] [2510] [2511] [2512] Underfull \hbox (badness 10000) in paragraph at lines 4638--4640 []\T1/ptm/m/n/10 Sample data set ac-com-pa-ny-ing the ref-er-ence be-low (file `\T1/zi4/m/sl/10 xclara.dat\T1/ptm/m/n/10 ' in side [2513]) (./codetools-pkg.tex [2514] Chapter 21. [2515] [2516] [2517] [2518] [2519]) (./foreign-pkg.tex [2520] Chapter 22. [2521] [2522] [2523] [2524] [2525] [2526] [2527] [2528] Underfull \hbox (badness 10000) in paragraph at lines 506--515 []\T1/ptm/m/n/10 character: what to do with du-pli-cated value la-bels for dif- fer- Underfull \hbox (badness 10000) in paragraph at lines 506--515 \T1/ptm/m/n/10 ent lev-els. For \T1/zi4/m/sl/10 "append" \T1/ptm/m/n/10 (the de -fault), the first orig-i-nal value Underfull \hbox (badness 10000) in paragraph at lines 506--515 \T1/ptm/m/n/10 la-bel is kept while fur-ther du-pli-cated la-bels are re-named to Underfull \hbox (badness 10000) in paragraph at lines 506--515 \T1/zi4/m/sl/10 paste0(label, duplicated.value.labels.infix, level)\T1/ptm/m/n/ 10 , for Underfull \hbox (badness 1708) in paragraph at lines 506--515 \T1/zi4/m/sl/10 "condense"\T1/ptm/m/n/10 , all lev-els with iden-ti-cal la-bels are con-densed into ex-actly [2529] Overfull \hbox (6.73795pt too wide) in paragraph at lines 625--625 []\T1/zi4/m/n/9 ### Expect lots of warnings as value labels (corresponding to R factor labels) are uncomplete,[] [2530] [2531] [2532] Underfull \hbox (badness 10000) in paragraph at lines 813--814 [2533] [2534] [2535] [2536] [2537] [2538] [2539] Underfull \hbox (badness 10000) in paragraph at lines 1267--1273 []\T1/ptm/m/n/10 The work for this func-tion is done by \T1/zi4/m/sl/10 foreign :::writeForeignStata\T1/ptm/m/n/10 , [2540] [2541]) (./lattice-pkg.tex [2542] Chapter 23. [2543] [2544] [2545] [2546] [2547] [2548] Underfull \hbox (badness 10000) in paragraph at lines 479--484 []\T1/ptm/m/n/10 A po-ten-tially use-ful com-po-nent of \T1/zi4/m/sl/10 scales \T1/ptm/m/n/10 in this case may be Underfull \hbox (badness 1472) in paragraph at lines 479--484 \T1/zi4/m/sl/10 abbreviate = TRUE\T1/ptm/m/n/10 , in which case long la-bels wh ich would usu-ally [2549] [2550] [2551] [2552] [2553] [2554] [2555] [2556] [2557] [2558] Underfull \hbox (badness 1062) in paragraph at lines 1398--1402 \T1/ptm/m/n/10 no-ta-tion for the x and y axes re-spec-tively. See doc-u-men-ta -tion for [2559] Underfull \vbox (badness 4416) has occurred while \output is active [2560] Underfull \hbox (badness 1803) in paragraph at lines 1566--1583 [][][]\T1/zi4/m/sl/10 Lattice[][][] \T1/ptm/m/n/10 for an overview of the pack- age, as well as [][]\T1/zi4/m/sl/10 barchart.table[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/sl/10 print.trellis[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1566--1583 [][]\T1/zi4/m/sl/10 panel.stripplot[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 p anel.superpose[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 panel.loess[][][]\T1/p tm/m/n/10 , [][]\T1/zi4/m/sl/10 panel.average[][][]\T1/ptm/m/n/10 , [][]\T1/zi4 /m/sl/10 strip.default[][][]\T1/ptm/m/n/10 , [2561] [2562] [2563] Underfull \hbox (badness 3009) in paragraph at lines 1725--1727 []\T1/ptm/m/n/10 additional ar-gu-ments passed to [][]\T1/zi4/m/sl/10 xyplot[][ ][]\T1/ptm/m/n/10 , which may pass them on to Underfull \hbox (badness 6808) in paragraph at lines 1755--1759 []\T1/ptm/m/n/10 graphical ar-gu-ments, which are pro-cessed and even-tu-ally p assed to [2564] [2565] [2566] [2567] [2568] Underfull \hbox (badness 10000) in paragraph at lines 2141--2144 []\T1/ptm/m/n/10 When \T1/zi4/m/sl/10 breaks \T1/ptm/m/n/10 is un-spec-i-fied, the value of [2569] [2570] [2571] [2572] Underfull \hbox (badness 7064) in paragraph at lines 2362--2366 []\T1/ptm/m/n/10 For the \T1/zi4/m/sl/10 "formula" \T1/ptm/m/n/10 method, \T1/z i4/m/sl/10 x \T1/ptm/m/n/10 should be a for-mula of the form [2573] [2574] Underfull \hbox (badness 7064) in paragraph at lines 2547--2554 []\T1/ptm/m/n/10 For the \T1/zi4/m/sl/10 "formula" \T1/ptm/m/n/10 method, \T1/z i4/m/sl/10 x \T1/ptm/m/n/10 should be a for-mula of the form [2575] [2576] [2577] [2578] Underfull \hbox (badness 2781) in paragraph at lines 2848--2850 []\T1/ptm/m/n/10 A color ramp spec-i-fi-ca-tion, as in the \T1/zi4/m/sl/10 col. regions \T1/ptm/m/n/10 ar-gu-ment in [2579] Underfull \hbox (badness 2486) in paragraph at lines 2959--2963 []\T1/ptm/m/n/10 Other use-ful ar-gu-ments are men-tioned in the help page for the de-fault panel func-tion [2580] [2581] [2582] Underfull \hbox (badness 10000) in paragraph at lines 3110--3118 []\T1/ptm/m/n/10 For the \T1/zi4/m/sl/10 "formula" \T1/ptm/m/n/10 meth-ods, a f or-mula of the form \T1/zi4/m/sl/10 z ~ x [2583] [2584] [2585] [2586]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.parallel}) has been already used, duplicate ignored \relax l.3431 \aliasA{parallel}{B\_08\_splom}{parallel} [2587] [2588] [2589] [2590] [2591] [2592] [2593] Underfull \hbox (badness 5696) in paragraph at lines 3922--3926 []\T1/ptm/m/n/10 A pos-si-ble use of this ar-gu-ment is to change the de-fault set-tings Underfull \hbox (badness 4647) in paragraph at lines 3922--3926 \T1/ptm/m/n/10 by spec-i-fy-ing \T1/zi4/m/sl/10 lattice.options(default.theme = "col.whitebg")\T1/ptm/m/n/10 . Underfull \hbox (badness 2435) in paragraph at lines 3922--3926 \T1/ptm/m/n/10 For back-compatibility, this is ini-tially (when lat-tice is loa ded) set to [2594] [2595] Underfull \hbox (badness 1173) in paragraph at lines 4061--4065 []\T1/ptm/m/n/10 A char-ac-ter string giv-ing the name of a com-po-nent. If un- spec-i-fied in Underfull \hbox (badness 3219) in paragraph at lines 4088--4090 []\T1/ptm/m/n/10 A log-i-cal flag, in-di-cat-ing whether a warn-ing should be i s-sued when [2596] [2597] [2598] Underfull \hbox (badness 3492) in paragraph at lines 4284--4294 []\T1/ptm/m/n/10 A color spec-i-fi-ca-tion. \T1/zi4/m/sl/10 col \T1/ptm/m/n/10 is used for com-po-nents \T1/zi4/m/sl/10 "plot.symbol"\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4309--4312 []\T1/ptm/m/n/10 fill color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/sl/10 plo t.symbol\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 plot.polygon\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4312--4314 []\T1/ptm/m/n/10 border color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/sl/10 p lot.polygon \T1/ptm/m/n/10 and [2599] [2600] [2601] [2602] [2603] [2604] [2605] [2606] [2607] [2608] Underfull \hbox (badness 6157) in paragraph at lines 5035--5038 []\T1/zi4/m/sl/10 plot.shingle \T1/ptm/m/n/10 dis-plays the ranges of shin-gles via rect-an-gles. \T1/zi4/m/sl/10 print.shingle \T1/ptm/m/n/10 and [2609] [2610] [2611] [2612] [2613] [2614] Underfull \hbox (badness 10000) in paragraph at lines 5486--5489 []\T1/ptm/m/n/10 logical, spec-i-fy-ing whether the la-bels etc should be hor-i -zon-tal. Underfull \hbox (badness 5592) in paragraph at lines 5486--5489 \T1/zi4/m/sl/10 horizontal=FALSE \T1/ptm/m/n/10 is use-ful for strips on the le ft of pan-els us-ing [2615] [2616] [2617] [2618] [2619] Underfull \hbox (badness 4805) in paragraph at lines 5846--5850 []\T1/ptm/m/n/10 logical, whether the view-port be-ing as-signed fo-cus should be high- Underfull \hbox (badness 10000) in paragraph at lines 5857--5864 []\T1/ptm/m/n/10 For \T1/zi4/m/sl/10 panel.identify.qqmath\T1/ptm/m/n/10 , ex-t ra pa-ram-e-ters are passed on to Underfull \hbox (badness 1226) in paragraph at lines 5857--5864 \T1/zi4/m/sl/10 panel.identify\T1/ptm/m/n/10 . For \T1/zi4/m/sl/10 panel.identi fy\T1/ptm/m/n/10 , ex-tra ar-gu-ments are treated as Underfull \hbox (badness 2418) in paragraph at lines 5857--5864 \T1/ptm/m/n/10 graph-i-cal pa-ram-e-ters and are used for la-belling. For \T1/z i4/m/sl/10 trellis.focus Underfull \hbox (badness 10000) in paragraph at lines 5857--5864 \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 trellis.switchFocus\T1/ptm/m/n/10 , these ar e used (in com-bi-na-tion with Underfull \hbox (badness 1259) in paragraph at lines 5857--5864 [][]\T1/zi4/m/sl/10 lattice.options[][][]\T1/ptm/m/n/10 ) for high-light-ing th e cho-sen view-port if so re-quested. [2620] [2621] [2622] [2623] Underfull \hbox (badness 4242) in paragraph at lines 6157--6162 []\T1/ptm/m/n/10 Graphical pa-ram-e-ters for the bars. By de-fault, the trel-li s pa-ram-e- Underfull \hbox (badness 2529) in paragraph at lines 6157--6162 \T1/ptm/m/n/10 ter \T1/zi4/m/sl/10 plot.polygon \T1/ptm/m/n/10 is used if there is no group-ing vari-able, oth-er-wise [2624] [2625] Underfull \hbox (badness 2310) in paragraph at lines 6273--6278 []\T1/ptm/m/n/10 Creates Box and Whisker plot of \T1/zi4/m/sl/10 x \T1/ptm/m/n/ 10 for ev-ery level of \T1/zi4/m/sl/10 y \T1/ptm/m/n/10 (or the other way round if [2626] [2627] [2628] [2629] [2630] [2631] [2632] [2633] [2634] [2635] [2636] Underfull \hbox (badness 3168) in paragraph at lines 7055--7059 \T1/ptm/m/n/10 to know what ar-gu-ments this func-tion is passed when called. U se [2637] [2638] [2639] [2640] Underfull \hbox (badness 2012) in paragraph at lines 7326--7329 []\T1/ptm/m/n/10 Further ar-gu-ments, of-ten graph-i-cal pa-ram-e-ters, even-tu -ally passed on to [2641] [2642] Underfull \hbox (badness 3333) in paragraph at lines 7498--7500 []\T1/ptm/m/n/10 default colours are ob-tained from \T1/zi4/m/sl/10 plot.symbol \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 plot.line \T1/ptm/m/n/10 us-ing [2643] [2644] [2645] Underfull \vbox (badness 10000) has occurred while \output is active [2646] [2647] [2648] Underfull \hbox (badness 1436) in paragraph at lines 7912--7918 []\T1/ptm/m/n/10 A log-i-cal flag de-ter-min-ing whether the de-fault graph-i-c al pa-ram-e-ters for Underfull \hbox (badness 1661) in paragraph at lines 7912--7918 \T1/zi4/m/sl/10 panel.abline \T1/ptm/m/n/10 should be taken from the ``ref-er-e nce.line'' pa-ram-e-ter set- Underfull \hbox (badness 1231) in paragraph at lines 7912--7918 \T1/ptm/m/n/10 tings. The de-fault is to take them from the ``add.line'' set-ti ngs. The [2649] [2650] [2651] [2652] [2653] [2654] [2655] [2656] Underfull \hbox (badness 10000) in paragraph at lines 8470--8473 []\T1/ptm/m/n/10 Extra ar-gu-ments. Passed down to \T1/zi4/m/sl/10 panel.superp ose \T1/ptm/m/n/10 from [2657] Underfull \hbox (badness 1092) in paragraph at lines 8516--8518 []\T1/ptm/m/n/10 Deepayan Sarkar \T1/zi4/m/sl/10 \T1/ptm/m/n/10 (\T1/zi4/m/sl/10 panel.superpose.2 \T1/ptm/m/n/10 orig-i-nally con- [2658] [2659] Underfull \hbox (badness 3895) in paragraph at lines 8677--8680 []\T1/ptm/m/n/10 details of his-togram cal-cu-la-tions. \T1/zi4/m/sl/10 type \T 1/ptm/m/n/10 has a dif-fer-ent mean-ing in [2660] Underfull \hbox (badness 1515) in paragraph at lines 8753--8757 []\T1/ptm/m/n/10 numeric vec-tor of length two, rep-re-sent-ing prob-a-bil-i-ti es. If used with [2661] [2662] Underfull \hbox (badness 6316) in paragraph at lines 8859--8864 []\T1/ptm/m/n/10 which packet (counted ac-cord-ing to the packet or-der, de-scr ibed in Underfull \hbox (badness 5908) in paragraph at lines 8876--8879 []\T1/ptm/m/n/10 list, sim-i-lar to those pro-duced by \T1/zi4/m/sl/10 xscale.c omponents.default \T1/ptm/m/n/10 and [2663] [2664] [2665] [2666] Overfull \hbox (25.25827pt too wide) in paragraph at lines 9164--9168 []\T1/ptm/m/n/10 returns a list with sev-eral com-po-nents, in-clud-ing \T1/zi4 /m/sl/10 left, right, left.name, right.name, condition Overfull \hbox (14.60007pt too wide) in paragraph at lines 9164--9168 \T1/ptm/m/n/10 for 2-D, and \T1/zi4/m/sl/10 left, right.x, right.y, left.nam e, right.x.name, right.y.name, condition [2667] [2668] [2669] [2670] [2671] [2672] [2673] [2674] [2675] [2676]pdfTeX war ning (ext4): destination with the same identifier (name{Rfn.melanoma}) has been already used, duplicate ignored \relax l.9853 \aliasA{melanoma}{H\_melanoma}{melanoma} [2677] [2678] [2679] Underfull \hbox (badness 4144) in paragraph at lines 10077--10080 []\T1/ptm/m/n/10 Rural Health Re-form Pol-icy Re-search Cen-ter. _Ex-plor-ing R u-ral and Ur-ban Mor-tal- Underfull \hbox (badness 1509) in paragraph at lines 10077--10080 \T1/ptm/m/n/10 ity Dif-fer-ences_, Au-gust 2015 Bethesda, MD. [][]$\T1/zi4/m/sl /10 https : / / ruralhealth . und . edu / projects / [2680] [2681]) (./mgcv-pkg.tex [2682] Chapter 24. [2683] [2684] [2685] Underfull \hbox (badness 1142) in paragraph at lines 171--175 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from Underfull \hbox (badness 1043) in paragraph at lines 196--201 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2686] [2687] [2688] Underfull \hbox (badness 10000) in paragraph at lines 358--365 [][][]\T1/zi4/m/sl/10 mgcv.parallel[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 m gcv-package[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gamObject[][][]\T1/ptm/m/ n/10 , [][]\T1/zi4/m/sl/10 gam.models[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 smooth.terms[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 7168) in paragraph at lines 358--365 [][]\T1/zi4/m/sl/10 linear.functional.terms[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m /sl/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 te[][][] [][]predict.gam[][] []\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.gam[][][]\T1/ptm/m/n/10 , [][]\T1/z i4/m/sl/10 summary.gam[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gam.side[][][] \T1/ptm/m/n/10 , [2689] [2690] [2691] [2692] [2693] [2694] Underfull \hbox (badness 1158) in paragraph at lines 665--667 []\T1/ptm/m/n/10 Choosing the ba-sis di-men-sion, and check-ing the choice, whe n us-ing pe-nal-ized re-gres-sion [2695] Underfull \hbox (badness 1259) in paragraph at lines 728--729 []\T1/ptm/m/n/10 Wood, S.N. (2017) Gen-er-al-ized Ad-di-tive Mod-els: An In-tro -duc-tion with R (2nd edi-tion). [2696] Underfull \vbox (badness 10000) has occurred while \output is active [2697] [2698] [2699] [2700] [2701] [2702] [2703] [2704] [2705] [2706] [2707] [2708] [2709] [2710] [2711] [2712] [2713] [2714] Underfull \vbox (badness 5681) has occurred while \output is active [2715] [2716] [2717] [2718] [2719] Underfull \hbox (badness 1142) in paragraph at lines 2102--2106 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from Underfull \hbox (badness 1043) in paragraph at lines 2128--2133 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2720] [2721] [2722] [2723] [2724] [2725] Underfull \vbox (badness 10000) has occurred while \output is active [2726] Underfull \vbox (badness 10000) has occurred while \output is active [2727] [2728] [2729] [2730] [2731] [2732] [2733] [2734] [2735] [2736] [2737] [2738] [2739] [2740] [2741] Underfull \hbox (badness 10000) in paragraph at lines 3436--3440 []\T1/ptm/m/n/10 Random ef-fects can be added to \T1/zi4/m/sl/10 gam \T1/ptm/m/ n/10 mod-els us-ing \T1/zi4/m/sl/10 s(...,bs="re") \T1/ptm/m/n/10 terms (see [2742] Underfull \vbox (badness 10000) has occurred while \output is active [2743] Underfull \vbox (badness 10000) has occurred while \output is active [2744] [2745] Underfull \hbox (badness 1184) in paragraph at lines 3722--3726 []\T1/ptm/m/n/10 list of the square root penal-ties: last en-try is root of fix ed penalty, if [2746] [2747] [2748] [2749] [2750] [2751] [2752] [2753] [2754] [2755] [2756] [2757] Underfull \hbox (badness 1142) in paragraph at lines 4443--4447 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2758] [2759] Underfull \hbox (badness 1231) in paragraph at lines 4544--4546 []\T1/zi4/m/sl/10 gamm \T1/ptm/m/n/10 per-forms poorly with bi-nary data, since it uses PQL. It is bet-ter to use \T1/zi4/m/sl/10 gam \T1/ptm/m/n/10 with [2760] [2761] Underfull \vbox (badness 10000) has occurred while \output is active [2762] [2763] [2764] Underfull \hbox (badness 2181) in paragraph at lines 4916--4917 []\T1/ptm/m/n/10 one sided for-mula con-tain-ing vari-ables needed for pre-dic- tion, used by [2765] [2766] [2767] [2768] [2769] [2770] [2771] [2772] [2773] [2774] [2775] [2776] [2777] Underfull \hbox (badness 1142) in paragraph at lines 5658--5662 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2778] [2779] [2780] [2781] [2782] [2783] Underfull \hbox (badness 1087) in paragraph at lines 5952--5953 []\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 rho \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 thet a \T1/ptm/m/n/10 were sup-plied then deriva-tives are w.r.t. these. In this cas e, and if [2784] [2785] Underfull \vbox (badness 10000) has occurred while \output is active [2786] [2787] [2788] [2789] [2790] [2791] [2792] [2793] [2794] [2795] Underfull \vbox (badness 4805) has occurred while \output is active [2796] [2797] Underfull \hbox (badness 1242) in paragraph at lines 6848--6849 []\T1/ptm/m/n/10 Development of mgcv ver-sion 1.8 was part funded by EP-SRC gra nts EP/K005251/1 and [2798] [2799] [2800] [2801] Underfull \vbox (badness 10000) has occurred while \output is active [2802] [2803] [2804] [2805] [2806] [2807] [2808] [2809] Underfull \hbox (badness 6001) in paragraph at lines 7488--7490 []\T1/ptm/m/n/10 Simon N. Wood \T1/zi4/m/sl/10 \T1/p tm/m/n/10 mod-i-fied from Ven-ables and Rip-ley's [2810] [2811] [2812] [2813] [2814] [2815] [2816] [2817] [2818] [2819] Underfull \vbox (badness 10000) has occurred while \output is active [2820] [2821] Underfull \hbox (badness 1038) in paragraph at lines 8237--8240 []\T1/ptm/m/n/10 The fol-low-ing func-tions are pro-vided: \T1/zi4/m/sl/10 Dim. pdIndot\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 coef.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/ sl/10 corMatrix.pdIdnot\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 8237--8240 \T1/zi4/m/sl/10 logDet.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdConstruct.pdId not\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdFactor.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/ sl/10 pdMatrix.pdIdnot\T1/ptm/m/n/10 , [2822] Underfull \hbox (badness 10000) in paragraph at lines 8293--8296 []\T1/ptm/m/n/10 These func-tions (\T1/zi4/m/sl/10 pdTens\T1/ptm/m/n/10 , \T1/z i4/m/sl/10 pdConstruct.pdTens\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdFactor.pdTens\T 1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdMatrix.pdTens\T1/ptm/m/n/10 , [2823] [2824] [2825] [2826] [2827] [2828] [2829] [2830] [2831] [2832] [2833] Underfull \hbox (badness 1852) in paragraph at lines 8961--8964 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/sl/10 termplot[] [][]\T1/ptm/m/n/10 , if \T1/zi4/m/sl/10 object \T1/ptm/m/n/10 pos-sesses an at- tribute \T1/zi4/m/sl/10 "para.only" \T1/ptm/m/n/10 and [2834] [2835] Underfull \hbox (badness 1852) in paragraph at lines 9123--9126 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/sl/10 termplot[] [][]\T1/ptm/m/n/10 , if \T1/zi4/m/sl/10 object \T1/ptm/m/n/10 pos-sesses an at- tribute \T1/zi4/m/sl/10 "para.only" \T1/ptm/m/n/10 and [2836] [2837] Underfull \vbox (badness 10000) has occurred while \output is active [2838] Underfull \vbox (badness 10000) has occurred while \output is active [2839] Underfull \hbox (badness 1205) in paragraph at lines 9350--9352 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 9350--9352 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for Underfull \hbox (badness 1975) in paragraph at lines 9356--9361 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [2840] Underfull \hbox (badness 1205) in paragraph at lines 9440--9442 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 9440--9442 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for [2841] [2842] [2843] [2844] Underfull \hbox (badness 1253) in paragraph at lines 9639--9641 []\T1/ptm/m/n/10 Note that the op-ti-mized smooth-ing pa-ram-e-ter se-lec-tion cri-te-rion re-ported is one of GCV, [2845] [2846] [2847] Underfull \hbox (badness 4792) in paragraph at lines 9825--9828 []\T1/ptm/m/n/10 Alternatively, but less straight-for-wardly, the \T1/zi4/m/sl/ 10 paraPen \T1/ptm/m/n/10 ar-gu-ment to [][]\T1/zi4/m/sl/10 gam[][][] \T1/ptm/m /n/10 can be used: Underfull \hbox (badness 10000) in paragraph at lines 9825--9828 \T1/ptm/m/n/10 see [][]\T1/zi4/m/sl/10 gam.models[][][]\T1/ptm/m/n/10 . If smoo th-ing pa-ram-e-ter es-ti-ma-tion is by ML or REML (e.g. [2848] [2849] Underfull \hbox (badness 10000) in paragraph at lines 9920--9923 []\T1/ptm/m/n/10 the type of resid-u-als wanted. Usu-ally one of \T1/zi4/m/sl/1 0 "deviance"\T1/ptm/m/n/10 , [2850] [2851] [2852] [2853] [2854] [2855] [2856] [2857] [2858] [2859] Underfull \vbox (badness 10000) has occurred while \output is active [2860] Underfull \hbox (badness 3861) in paragraph at lines 10548--10551 []\T1/ptm/m/n/10 INTERNAL rou-tine to ap-ply ini-tial Sl re-parameterization to model ma-trix X, or, if [2861] [2862] Underfull \hbox (badness 5681) in paragraph at lines 10654--10659 \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 b.orig = D*b.repara \T1/ptm/m/n/10 (where \T 1/zi4/m/sl/10 b.orig \T1/ptm/m/n/10 is the orig-i-nal pa-ram-e-ter vec-tor). Underfull \hbox (badness 2762) in paragraph at lines 10654--10659 \T1/ptm/m/n/10 If ma-trix then \T1/zi4/m/sl/10 X[,start:stop]%*%D \T1/ptm/m/n/1 0 is re-parametrization of \T1/zi4/m/sl/10 X[,start:stop]\T1/ptm/m/n/10 , and [2863] Underfull \hbox (badness 1975) in paragraph at lines 10760--10765 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [2864] [2865] Underfull \hbox (badness 1762) in paragraph at lines 10849--10861 \T1/ptm/m/n/10 plate re-gres-sion splines: see [][]\T1/zi4/m/sl/10 tprs[][][]\T 1/ptm/m/n/10 ); \T1/zi4/m/sl/10 ts.smooth.spec \T1/ptm/m/n/10 (thin plate re-gr es-sion splines with [2866] [2867] [2868] Underfull \hbox (badness 7667) in paragraph at lines 11061--11067 [][][]\T1/zi4/m/sl/10 gam[][][] \T1/ptm/m/n/10 can use adap-tive smooths of one or two vari-ables, spec-i-fied via terms like [2869] Underfull \hbox (badness 10000) in paragraph at lines 11102--11103 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2870] [2871] [2872] [2873] Underfull \vbox (badness 10000) has occurred while \output is active [2874] Underfull \hbox (badness 10000) in paragraph at lines 11379--11381 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2875] [2876] Underfull \hbox (badness 10000) in paragraph at lines 11507--11508 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2877] [2878] [2879] Underfull \hbox (badness 1436) in paragraph at lines 11645--11650 \T1/ptm/m/n/10 nest-ing of the smooth within the fac-tor. Note how-ever that: i ) \T1/zi4/m/sl/10 gamm \T1/ptm/m/n/10 only al-lows one [2880] [2881] Underfull \hbox (badness 10000) in paragraph at lines 11736--11737 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2882] [2883] [2884] [2885] [2886] [2887] Underfull \vbox (badness 10000) has occurred while \output is active [2888] [2889] [2890] Underfull \hbox (badness 10000) in paragraph at lines 12304--12310 []\T1/ptm/m/n/10 A smooth spec-i-fi-ca-tion ob-ject as pro-duced by a [2891] [2892] [2893] Underfull \vbox (badness 10000) has occurred while \output is active [2894] Underfull \vbox (badness 10000) has occurred while \output is active [2895] [2896] Underfull \hbox (badness 10000) in paragraph at lines 12647--12648 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2897] [2898] [2899] [2900] Underfull \hbox (badness 3895) in paragraph at lines 12908--12911 [][][]\T1/zi4/m/sl/10 gam[][][] \T1/ptm/m/n/10 can use isotropic smooths of any num-ber of vari-ables, spec-i-fied via terms like [2901] Underfull \hbox (badness 10000) in paragraph at lines 12953--12955 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2902] [2903] [2904] [2905] Underfull \hbox (badness 1371) in paragraph at lines 13170--13176 []\T1/zi4/m/sl/10 bs="ad" \T1/ptm/m/n/10 Uni-vari-ate and bi-vari-ate adap-tive smooths are avail-able (see Underfull \hbox (badness 10000) in paragraph at lines 13210--13214 [][][]\T1/zi4/m/sl/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 te[][][]\T1/p tm/m/n/10 , [][]\T1/zi4/m/sl/10 t2[][][] [][]tprs[][][]\T1/ptm/m/n/10 ,[][]\T1/ zi4/m/sl/10 Duchon.spline[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 cubic.regre ssion.spline[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/sl/10 p.spline[][][]\T1/ptm/m/n /10 , Underfull \hbox (badness 10000) in paragraph at lines 13210--13214 [][]\T1/zi4/m/sl/10 mrf[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 soap[][][]\T1 /ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Spherical.Spline[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/sl/10 adaptive.smooth[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 user.de fined.smooth[][][]\T1/ptm/m/n/10 , Overfull \hbox (46.8009pt too wide) in paragraph at lines 13210--13214 [][]\T1/zi4/m/sl/10 smooth.construct.re.smooth.spec[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/sl/10 smooth.construct.gp.smooth.spec[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4 /m/sl/10 factor.smooth.interaction[][][] [2906] [2907] [2908] Underfull \hbox (badness 2326) in paragraph at lines 13366--13373 []\T1/ptm/m/n/10 These wrap-per func-tions ex-ist to al-low smooths spec-i-fied us-ing [][]\T1/zi4/m/sl/10 smooth.construct[][][] \T1/ptm/m/n/10 and [2909] Underfull \hbox (badness 2158) in paragraph at lines 13451--13451 []\T1/ptm/m/it/10 Extract smooth-ing pa-ram-e-ter es-ti-ma-tor co-vari-ance ma- trix from [2910] [2911] [2912] [2913] [2914] [2915] [2916] [2917] [2918] [2919] [2920] [2921] [2922] [2923] [2924] [2925] [2926] [2927] [2928] Underfull \hbox (badness 10000) in paragraph at lines 14616--14624 []\T1/ptm/m/n/10 Suppose that \T1/zi4/m/sl/10 m=1 \T1/ptm/m/n/10 and you fill a n ar-ray us-ing code like Underfull \hbox (badness 10000) in paragraph at lines 14616--14624 \T1/zi4/m/sl/10 for(i in 1:K) for(j in i:K) for(k in j:K) for(l in k:K) [2929] [2930] [2931] [2932] [2933] [2934] [2935] Underfull \hbox (badness 1796) in paragraph at lines 14999--15002 []\T1/ptm/m/n/10 other op-tions to pass on to [][]\T1/zi4/m/sl/10 persp[][][]\T 1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 image[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/ sl/10 contour[][][]\T1/ptm/m/n/10 . In par-tic-u-lar [2936] [2937] [2938] [2939] [2940] [2941]) (./nlme-pkg.tex [2942] Chapter 25. [2943] [2944] [2945] [2946] [2947] [2948] [2949] [2950] [2951] [2952] [2953] [2954] [2955] [2956] [2957] [2958] [2959] [2960] [2961] [2962] [2963] [2964] [2965] [2966] [2967] [2968] [2969] [2970] [2971] [2972] Underfull \hbox (badness 2875) in paragraph at lines 1994--2000 []\T1/ptm/m/n/10 an op-tional log-i-cal value or one-sided for-mula, in-di-cat- ing a co-vari-ate Underfull \hbox (badness 1466) in paragraph at lines 1994--2000 \T1/ptm/m/n/10 that is in-ner to the \T1/zi4/m/sl/10 displayLevel \T1/ptm/m/n/1 0 group-ing fac-tor. If equal to \T1/zi4/m/sl/10 TRUE\T1/ptm/m/n/10 , [2973] [2974] [2975] [2976] Underfull \hbox (badness 10000) in paragraph at lines 2255--2261 [][][]\T1/zi4/m/sl/10 ACF.lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 corARMA [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 corClasses[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/sl/10 Dim.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Initi alize.corStruct[][][]\T1/ptm/m/n/10 , [2977] [2978] [2979] [2980] [2981] [2982] [2983] [2984] [2985] [2986] [2987] [2988] [2989] [2990] [2991] [2992] [2993] [2994] [2995] [2996] [2997] [2998] [2999] [3000] [3001] [3002] [3003] [3004] [3005] [3006] [3007] [3008] [3009] Underfull \hbox (badness 1067) in paragraph at lines 4413--4418 \T1/ptm/m/n/10 ma-trix), \T1/zi4/m/sl/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues ), and \T1/zi4/m/sl/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to [3010] [3011] [3012] [3013] [3014] [3015] [3016] [3017] [3018] [3019] [3020] [3021] Underfull \hbox (badness 10000) in paragraph at lines 5159--5163 [][][]\T1/zi4/m/sl/10 getCovariate.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/ m/sl/10 getCovariate.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getCo variate.varFunc[][][]\T1/ptm/m/n/10 , [3022] [3023] [3024] [3025] [3026] [3027] [3028] Underfull \hbox (badness 10000) in paragraph at lines 5591--5594 [][][]\T1/zi4/m/sl/10 getGroupsFormula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 getGroups.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getGroups.gls[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getGroups.lmList[][][]\T1/ptm/m/n/10 , [3029] [3030] [3031] [3032] [3033] [3034] [3035] Underfull \hbox (badness 10000) in paragraph at lines 5972--5977 [][][]\T1/zi4/m/sl/10 getGroupsFormula.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/ sl/10 getGroupsFormula.lmList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getGrou psFormula.lme[][][]\T1/ptm/m/n/10 , [3036] [3037] [3038] [3039] Underfull \hbox (badness 1490) in paragraph at lines 6242--6253 [][][]\T1/zi4/m/sl/10 corClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 glsC ontrol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 glsObject[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot. gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 predict.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 qqnorm.gls[][][]\T1/ptm/m/n/10 , [3040] Underfull \hbox (badness 10000) in paragraph at lines 6306--6308 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3041] [3042] [3043] [3044] [3045] [3046] Underfull \hbox (badness 10000) in paragraph at lines 6720--6722 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3047] [3048] [3049] [3050] Underfull \hbox (badness 10000) in paragraph at lines 6993--7000 [][][]\T1/zi4/m/sl/10 formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gapply[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gsummary[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/sl/10 lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.nffGroupedData [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.nfnGroupedData[][][]\T1/ptm/m/n /10 , [3051] [3052] [3053] [3054] Underfull \hbox (badness 10000) in paragraph at lines 7255--7260 [][][]\T1/zi4/m/sl/10 Initialize.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/ sl/10 Initialize.lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Initialize .glsStruct[][][]\T1/ptm/m/n/10 , [3055] [3056] [3057] [3058] [3059] [3060] [3061] [3062] [3063] [3064] [3065] [3066] Underfull \hbox (badness 1642) in paragraph at lines 8037--8059 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a one-sided for-mula o f the form [3067] [3068] Underfull \hbox (badness 1642) in paragraph at lines 8209--8231 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a one-sided for-mula o f the form [3069] [3070] [3071] [3072] [3073] Underfull \hbox (badness 10000) in paragraph at lines 8520--8522 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3074]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.sig ma}) has been already used, duplicate ignored \relax l.8565 \aliasA{sigma}{lmeObject}{sigma} [3075] [3076] [3077] [3078] Underfull \hbox (badness 10000) in paragraph at lines 8795--8802 [][][]\T1/zi4/m/sl/10 lm[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 lme.lmList[] [][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.lmList[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/sl/10 pooledSD[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 predict.lmLi st[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 residuals.lmList[][][]\T1/ptm/m/n/ 10 , [3079] [3080] [3081] [3082] [3083] [3084] [3085] [3086] Underfull \hbox (badness 10000) in paragraph at lines 9317--9324 [][][]\T1/zi4/m/sl/10 lme[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/sl/10 gls[][][]\T1 /ptm/m/n/10 , [][]\T1/zi4/m/sl/10 logLik.corStruct[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/sl/10 logLik.glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 logLik .lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 logLik.lmList[][][]\T1/ptm /m/n/10 , [3087] [3088] [3089] [3090] [3091]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.Matrix}) has been already used, duplicate ignored \relax l.9679 ...rA{Matrix}{Assign Matrix Values}{Matrix} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.Matrix.1}) has been already used, dupl icate ignored \relax l.9679 ...rA{Matrix}{Assign Matrix Values}{Matrix} [3092] [3093] [3094] [3095] [3096] [3097] [3098] [3099] [3100] [3101] [3102] [3103] Underfull \hbox (badness 1596) in paragraph at lines 10452--10478 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a two-sided for-mula o f the form [3104] [3105] Underfull \hbox (badness 1490) in paragraph at lines 10590--10596 [][][]\T1/zi4/m/sl/10 nlmeControl[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 nlm e.nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 nlmeObject[][][]\T1/ptm/m/n /10 , [][]\T1/zi4/m/sl/10 nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 nlm eStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 pdClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 reStruct[][][]\T1/ptm/m/n/10 , [3106] [3107] [3108] [3109] Underfull \hbox (badness 10000) in paragraph at lines 10812--10816 []\T1/ptm/m/n/10 a log-i-cal value passed as the \T1/zi4/m/sl/10 trace \T1/ptm/ m/n/10 to Underfull \hbox (badness 10000) in paragraph at lines 10831--10833 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3110] [3111] [3112] [3113] [3114] [3115] [3116] [3117] [3118] [3119] [3120] [3121] [3122] [3123] [3124] [3125] [3126] [3127] [3128] [3129] [3130] [3131] [3132] [3133] [3134] [3135] [3136] [3137] [3138] [3139] [3140] [3141] [3142] [3143] [3144] [3145] [3146] [3147] [3148] [3149] [3150] [3151] Underfull \hbox (badness 1286) in paragraph at lines 13728--13735 []\T1/ptm/m/n/10 an op-tional log-i-cal func-tion or func-tion. If \T1/zi4/m/sl /10 TRUE \T1/ptm/m/n/10 and ei-ther \T1/zi4/m/sl/10 inner \T1/ptm/m/n/10 or [3152] [3153] [3154] [3155] [3156] [3157] [3158] [3159] Underfull \hbox (badness 1215) in paragraph at lines 14256--14258 []\T1/ptm/m/n/10 an op-tional nu-meric vec-tor with the lim-its for the y-axis. De-faults to [3160] [3161] [3162] [3163] [3164] [3165] [3166] [3167] [3168] [3169] [3170] [3171] [3172]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.random.effects}) has been already used, duplicate ignored \relax l.15153 ...Extract Random Effects}{random.effects} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.random.effects.1}) has been already us ed, duplicate ignored \relax l.15153 ...Extract Random Effects}{random.effects} [3173] [3174] [3175] [3176] [3177] [3178] [3179] [3180] [3181] [3182] [3183] Underfull \hbox (badness 1067) in paragraph at lines 15864--15869 \T1/ptm/m/n/10 ma-trix), \T1/zi4/m/sl/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues ), and \T1/zi4/m/sl/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to [3184] [3185] [3186] [3187] Underfull \hbox (badness 1448) in paragraph at lines 16107--16116 \T1/ptm/m/n/10 Op-tions in-clude \T1/zi4/m/sl/10 "response" \T1/ptm/m/n/10 for the "raw" resid-u-als (ob-served - fit-ted), [3188] [3189] Underfull \hbox (badness 10000) in paragraph at lines 16235--16253 []\T1/ptm/m/n/10 any of the fol-low-ing: (i) a one-sided for-mula of the form Underfull \hbox (badness 1721) in paragraph at lines 16235--16253 \T1/zi4/m/sl/10 ~x1+...+xn | g1/.../gm\T1/ptm/m/n/10 , with \T1/zi4/m/sl/10 x1+ ...+xn \T1/ptm/m/n/10 spec-i-fy-ing the model for [3190] [3191] [3192] [3193] [3194] [3195] [3196] [3197] Underfull \hbox (badness 1728) in paragraph at lines 16812--16815 []\T1/ptm/m/n/10 an op-tional log-i-cal value used to con-trol the amount of ou t-put in the [3198] [3199] [3200] [3201] [3202] Underfull \hbox (badness 10000) in paragraph at lines 17147--17156 []\T1/ptm/m/n/10 an op-tional char-ac-ter string with a de-scrip-tion of the \T 1/zi4/m/sl/10 pdMat Underfull \hbox (badness 6725) in paragraph at lines 17147--17156 \T1/ptm/m/n/10 class. De-fault de-pends on the method func-tion: \T1/zi4/m/sl/1 0 "Blocked" \T1/ptm/m/n/10 for Underfull \hbox (badness 10000) in paragraph at lines 17147--17156 \T1/zi4/m/sl/10 pdBlocked\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "Compound Symmetry" \ T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdCompSymm\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "D iagonal" Underfull \hbox (badness 10000) in paragraph at lines 17147--17156 \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdDiag\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "Mult iple of an Identity" \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdIdent\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 17147--17156 \T1/zi4/m/sl/10 "General Positive-Definite, Natural Parametrization" Underfull \hbox (badness 10000) in paragraph at lines 17147--17156 \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdNatural\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "G eneral Positive-Definite" \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdSymm\T1/ptm/m/n/ 10 , and [3203] Underfull \hbox (badness 10000) in paragraph at lines 17211--17219 \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 varComb\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "Con stant plus power of covariate" \T1/ptm/m/n/10 for Underfull \hbox (badness 3815) in paragraph at lines 17211--17219 \T1/zi4/m/sl/10 "Different standard deviations per stratum" \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 varIdent\T1/ptm/m/n/10 , [3204] [3205] [3206] [3207] [3208] [3209] [3210] [3211] [3212] [3213] [3214] Underfull \hbox (badness 10000) in paragraph at lines 17993--18003 [][][]\T1/zi4/m/sl/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 Variogram.corGaus[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.corLin[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.corRatio[][][]\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 17993--18003 [][]\T1/zi4/m/sl/10 Variogram.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl /10 Variogram.corSpher[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.defa ult[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.gls[][][]\T1/ptm/m/n/10 , [3215] [3216] [3217] [3218] [3219] Underfull \hbox (badness 5036) in paragraph at lines 18317--18326 [][][]\T1/zi4/m/sl/10 corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Vari ogram[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.default[][][]\T1/ptm/ m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4 /m/sl/10 Variogram.corGaus[][][]\T1/ptm/m/n/10 , [3220] [3221] [3222] [3223] [3224] [3225] [3226] [3227] [3228] [3229] [3230] [3231] [3232]) (./nnet-pkg.tex Chapter 26. pdfTeX warning (ext4): destination with the same identifier (name{Rfn.multinom} ) has been already used, duplicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.multinom.1}) has been already used, du plicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} [3233] Underfull \hbox (badness 10000) in paragraph at lines 78--87 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm [3234] [3235] [3236] [3237] [3238] [3239] [3240]) (./rpart-pkg.tex Chapter 27. [3241] [3242] [3243] [3244] [3245] [3246] [3247] [3248] [3249] [3250] [3251] [3252] [3253] [3254] [3255] [3256] [3257] [3258] [3259] [3260] [3261] [3262] [3263] [3264] [3265] [3266] [3267] [3268] [3269]) (./spatial-pkg.tex [3270] Chapter 28. [3271] [3272] [3273] [3274] [3275] [3276] Underfull \hbox (badness 10000) in paragraph at lines 423--427 [3277] [3278] [3279] [3280] [3281] [3282] [3283] [3284] [3285] [3286] [3287] [3288] [3289]) (./survival-pkg.tex [3290] Chapter 29. [3291] [3292] [3293] [3294]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.aml}) has been already used, duplicate ignored \relax l.319 ... Myelogenous Leukemia survival data}{aml} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.aml.1}) has been already used, duplica te ignored \relax l.319 ... Myelogenous Leukemia survival data}{aml} [3295] [3296] [3297] [3298] [3299] Underfull \vbox (badness 10000) has occurred while \output is active [3300] [3301] [3302] [3303] [3304] [3305] Underfull \hbox (badness 1097) in paragraph at lines 968--970 []\T1/ptm/m/n/10 F.J. Anscombe (1949). Trans-for-ma-tions of Pois-son, bi-no-mi al and negative-binomial data. [3306] [3307] [3308]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colon}) has been already used, duplicate ignored \relax l.1171 ...erapy for Stage B/C colon cancer}{colon} Underfull \vbox (badness 2698) has occurred while \output is active [3309] [3310] [3311] [3312] [3313] [3314] [3315] [3316] [3317] [3318] [3319] [3320] [3321] [3322] [3323] [3324] [3325] [3326] [3327] Underfull \hbox (badness 1389) in paragraph at lines 2567--2569 []\T1/ptm/m/n/10 Often used to add the ex-pected sur-vival curve(s) to a Kaplan -Meier plot gen-er-ated with [3328] Underfull \hbox (badness 1048) in paragraph at lines 2621--2623 []\T1/ptm/m/n/10 this pa-ram-e-ter is no longer nec-es-sary and is ig-nored. Se e the note in [3329] [3330] [3331] [3332] [3333] [3334] [3335] [3336] [3337] [3338] [3339] [3340] [3341] Underfull \vbox (badness 10000) has occurred while \output is active [3342] [3343] [3344] [3345] [3346] [3347] [3348] [3349] [3350] [3351] Underfull \hbox (badness 5274) in paragraph at lines 4163--4165 []\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/sl/10 "summary.survfit"\T1/ptm/m /n/10 , which is the re-sult of the [3352] [3353] [3354] [3355] [3356] [3357] Underfull \hbox (badness 1540) in paragraph at lines 4517--4520 []\T1/ptm/m/n/10 an ar-ray con-tain-ing the ex-pected num-ber of events (or per -son years if [3358] [3359] [3360] [3361] Underfull \vbox (badness 10000) has occurred while \output is active [3362] [3363] [3364] Underfull \hbox (badness 1281) in paragraph at lines 5029--5034 []\T1/ptm/m/n/10 type of resid-u-als, with choices of \T1/zi4/m/sl/10 "response "\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "deviance"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "d fbeta"\T1/ptm/m/n/10 , [3365] [3366] [3367] [3368] [3369] [3370] [3371] [3372] [3373] [3374] [3375] [3376] [3377] [3378] [3379] [3380] [3381] [3382] Underfull \hbox (badness 10000) in paragraph at lines 6255--6264 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for other sur-vival mod-els, of the form [3383] [3384] Underfull \hbox (badness 1038) in paragraph at lines 6407--6413 \T1/ptm/m/n/10 op-tion does not cre-ate a curve, rather it re-trieves the pre-d icted sur-vival [3385] [3386] [3387] [3388] [3389] Underfull \hbox (badness 10000) in paragraph at lines 6770--6775 [][][]\T1/zi4/m/sl/10 survfit.formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 survfit.coxph[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 survfit.object[][][]\T 1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 print.survfit[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/sl/10 plot.survfit[][][]\T1/ptm/m/n/10 , [3390] [3391] [3392] [3393] [3394] [3395] [3396] [3397] [3398] [3399] [3400] Underfull \hbox (badness 1354) in paragraph at lines 7622--7626 []\T1/ptm/m/n/10 survival times, for time de-pen-dent pre-dic-tion. It gives th e time range [3401] [3402] [3403] [3404] [3405] [3406] [3407] [3408] [3409] [3410] [3411] [3412] [3413] [3414] [3415] [3416] Underfull \vbox (badness 10000) has occurred while \output is active [3417] [3418]) (./fullrefman.ind [3419] [3420] [3421] [3422] [3423] [3424] [3425] [3426] [3427] [3428] [3429] [3430] [3431] [3432] [3433] [3434] [3435] [3436] [3437] [3438] [3439] Overfull \hbox (8.3567pt too wide) in paragraph at lines 2212--2214 []| \T1/zi4/m/it/10 smooth.construct.tensor.smooth.spec\T1/ptm/m/n/10 , [3440] [3441] [3442] [3443] [3444] Overfull \hbox (8.3567pt too wide) in paragraph at lines 2771--2773 []| \T1/zi4/m/it/10 smooth.construct.tensor.smooth.spec\T1/ptm/m/n/10 , [3445] [3446] [3447] [3448] [3449] [3450] [3451] [3452] [3453] Overfull \hbox (20.8567pt too wide) in paragraph at lines 3881--3883 []\T1/zi4/m/it/10 [,CsparseMatrix,index,index,logical-method Overfull \hbox (30.8567pt too wide) in paragraph at lines 3883--3885 []\T1/zi4/m/it/10 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\hbox (10.8567pt too wide) in paragraph at lines 3937--3939 []\T1/zi4/m/it/10 [,indMatrix,index,missing,logical-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 3939--3941 []\T1/zi4/m/it/10 [,sparseMatrix,index,index,logical-method Overfull \hbox (25.8567pt too wide) in paragraph at lines 3941--3943 []\T1/zi4/m/it/10 [,sparseMatrix,index,missing,logical-method Overfull \hbox (25.8567pt too wide) in paragraph at lines 3943--3945 []\T1/zi4/m/it/10 [,sparseMatrix,missing,index,logical-method Overfull \hbox (25.8567pt too wide) in paragraph at lines 3947--3949 []\T1/zi4/m/it/10 [,sparseVector,lsparseVector,ANY,ANY-method Overfull \hbox (25.8567pt too wide) in paragraph at lines 3949--3951 []\T1/zi4/m/it/10 [,sparseVector,nsparseVector,ANY,ANY-method [3454] Overfull \hbox (55.8567pt too wide) in paragraph at lines 4027--4029 []\T1/zi4/m/it/10 [<-,CsparseMatrix,Matrix,missing,replValue-method Overfull \hbox (40.8567pt too wide) in paragraph at lines 4029--4031 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paragraph at lines 7278--7280 []\T1/zi4/m/it/10 coerce,CHMfactor,triangularMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 7282--7284 []\T1/zi4/m/it/10 coerce,CsparseMatrix,denseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7286--7288 []\T1/zi4/m/it/10 coerce,CsparseMatrix,lsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 7288--7290 []\T1/zi4/m/it/10 coerce,CsparseMatrix,matrix.coo-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 7290--7292 []\T1/zi4/m/it/10 coerce,CsparseMatrix,matrix.csc-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 7292--7294 []\T1/zi4/m/it/10 coerce,CsparseMatrix,matrix.csr-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7296--7298 []\T1/zi4/m/it/10 coerce,CsparseMatrix,nsparseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 7298--7300 []\T1/zi4/m/it/10 coerce,CsparseMatrix,sparseVector-method Overfull \hbox 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coerce,matrix.csr,TsparseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 7898--7900 []\T1/zi4/m/it/10 coerce,ndenseMatrix,CsparseMatrix-method [3479] Overfull \hbox (5.8567pt too wide) in paragraph at lines 7900--7902 []\T1/zi4/m/it/10 coerce,ndenseMatrix,ldenseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 7904--7906 []\T1/zi4/m/it/10 coerce,ndenseMatrix,nsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 7906--7908 []\T1/zi4/m/it/10 coerce,ndenseMatrix,sparseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 7908--7910 []\T1/zi4/m/it/10 coerce,ndenseMatrix,TsparseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 7948--7950 []\T1/zi4/m/it/10 coerce,ngeMatrix,triangularMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 7972--7974 []\T1/zi4/m/it/10 coerce,ngTMatrix,symmetricMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 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[3] [4] Underfull \hbox (badness 2547) in paragraph at lines 141--149 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1 /ptm/m/n/10 such that \T1/zi4/m/n/10 1 - x != 1\T1/ptm/m/n/10 . Underfull \hbox (badness 10000) in paragraph at lines 141--149 \T1/ptm/m/n/10 It equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1 /ptm/m/n/10 if Underfull \hbox (badness 10000) in paragraph at lines 141--149 \T1/zi4/m/n/10 double.base \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.roundin g \T1/ptm/m/n/10 is 0; oth-er-wise, it is Underfull \hbox (badness 1668) in paragraph at lines 152--159 []\T1/ptm/m/n/10 the largest nor-mal-ized floating-point num-ber. Typ-i-cally, it is equal to [5] [6] Underfull \hbox (badness 1178) in paragraph at lines 297--301 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/ 10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues [7] [8] Underfull \hbox (badness 3977) in paragraph at lines 386--389 []\T1/ptm/m/n/10 logical: should \T1/zi4/m/n/10 minlength \T1/ptm/m/n/10 be ob- served strictly? Note that set-ting [9] [10] Underfull \hbox (badness 2556) in paragraph at lines 534--540 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ', [11] [12] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [13] [14] [15] [16] [17] [18] Underfull \hbox (badness 2671) in paragraph at lines 1145--1148 []\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec- tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis t of length [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] Overfull \hbox (26.27782pt too wide) in paragraph at lines 1920--1920 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [30] [31] [32] Underfull \hbox (badness 10000) in paragraph at lines 2118--2120 []\T1/ptm/m/n/10 a date-time ob-ject, or some-thing which can be co-erced by [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] Underfull \hbox (badness 10000) in paragraph at lines 3648--3650 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [55] [56] [57] Overfull \hbox (6.42029pt too wide) in paragraph at lines 3889--3889 [] \T1/zi4/m/n/10 c.factor <- function(..., recursive=TRUE) unlist(list(...) , recursive=recursive) [58] [59] [60] [61] [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] Underfull \hbox (badness 2521) in paragraph at lines 4873--4875 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] Overfull \hbox (5.27168pt too wide) in paragraph at lines 6026--6026 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [89] [90] Underfull \hbox (badness 2096) in paragraph at lines 6214--6227 []\T1/ptm/m/n/10 New restarts for \T1/zi4/m/n/10 withRestarts \T1/ptm/m/n/10 ca n be spec-i-fied in sev-eral ways. The sim-plest is in [91] [92] [93] Overfull \hbox (56.34871pt too wide) in paragraph at lines 6423--6425 []\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa ult", "internal", "wininet", "libcurl")\T1/ptm/m/n/10 : [94] [95] Underfull \hbox (badness 10000) in paragraph at lines 6565--6568 []\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo st gen-eral form (from RFC1738) is [96] [97] Underfull \hbox (badness 1442) in paragraph at lines 6747--6753 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \ T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re- move a Underfull \hbox (badness 1248) in paragraph at lines 6747--6753 \T1/ptm/m/n/10 Byte Or-der Mark if present (which it of-ten is for files and we b-pages gen-er-ated by Mi- Underfull \hbox (badness 2080) in paragraph at lines 6747--6753 \T1/ptm/m/n/10 crosoft ap-pli-ca-tions). If a BOM is re-quired (it is not rec-o m-mended) when writ-ing it [98] Underfull \hbox (badness 3568) in paragraph at lines 6809--6816 \T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as [99] [100] Underfull \vbox (badness 10000) has occurred while \output is active [101] [102] [103] Underfull \hbox (badness 1077) in paragraph at lines 7126--7132 []\T1/ptm/m/n/10 A length-one log-i-cal vec-tor that is not \T1/zi4/m/n/10 NA\T 1/ptm/m/n/10 . Con-di-tions of length greater Underfull \hbox (badness 1231) in paragraph at lines 7126--7132 \T1/ptm/m/n/10 than one are cur-rently ac-cepted with a warn-ing, but only the first el-e- [104] [105] [106] [107] [108] Underfull \hbox (badness 2096) in paragraph at lines 7467--7471 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [109] [110] Underfull \hbox (badness 3000) in paragraph at lines 7560--7562 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0, \T1/zi4/m/n/10 getOption("OutDec") \T1/ptm/m/n/10 is con-sulted when la-bels are con-structed for Underfull \hbox (badness 2351) in paragraph at lines 7585--7588 [][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T 1/ptm/m/n/10 , [111] [112] [113] [114] Underfull \hbox (badness 10000) in paragraph at lines 7840--7850 []\T1/zi4/m/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments to a data frame by call-ing [115] Underfull \hbox (badness 4479) in paragraph at lines 7911--7921 [][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[] [][] \T1/ptm/m/n/10 (for the col-umn names), [116] [117] [118] [119] [120] [121] [122] [123] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] Underfull \hbox (badness 1394) in paragraph at lines 9667--9672 []\T1/ptm/m/n/10 Subtraction of date-time ob-jects gives an ob-ject of this cla ss, by call-ing \T1/zi4/m/n/10 difftime \T1/ptm/m/n/10 with [140] [141] [142] [143] [144] Underfull \hbox (badness 1194) in paragraph at lines 10012--10017 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 dontCheck \T1/ptm/m/n/10 func-tion is the s ame as [][]\T1/zi4/m/n/10 identity[][][]\T1/ptm/m/n/10 , but is in-ter-preted b y \T1/zi4/m/n/10 R CMD check Underfull \hbox (badness 1231) in paragraph at lines 10012--10017 \T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of \T1/z i4/m/n/10 x\T1/ptm/m/n/10 . Cur-rently this is only used by [145] [146] [147] Underfull \hbox (badness 1735) in paragraph at lines 10217--10221 \T1/zi4/m/n/10 754-[]2008$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Double _ precision$[][]\T1/ptm/m/n/10 , [][]$\T1/ zi4/m/n/10 https : / / en . wikipedia . [148] [149] [150] [151] [152] [153] Underfull \hbox (badness 2150) in paragraph at lines 10640--10643 []\T1/ptm/m/n/10 logical in-di-cat-ing if du-pli-ca-tion should be con-sid-ered from the re-verse [154] Underfull \hbox (badness 6396) in paragraph at lines 10654--10662 []\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len t method def-i-ni-tions for Underfull \hbox (badness 2735) in paragraph at lines 10683--10690 []\T1/ptm/m/n/10 Except for fac-tors, log-i-cal and raw vec-tors the de-fault \ T1/zi4/m/n/10 nmax = NA \T1/ptm/m/n/10 is equiv-a-lent to [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] Underfull \hbox (badness 4569) in paragraph at lines 11763--11767 []\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been passed as an ar-gu-ment Underfull \hbox (badness 2401) in paragraph at lines 11763--11767 \T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller' s en-vi-ron-ment, i.e., one needs [169] [170] [171] [172] [173] [174] [175] [176] Underfull \hbox (badness 2698) in paragraph at lines 12340--12349 []\T1/ptm/m/n/10 Both \T1/zi4/m/n/10 $ \T1/ptm/m/n/10 and \T1/zi4/m/n/10 [[ \T1 /ptm/m/n/10 can be ap-plied to en-vi-ron-ments. Only char-ac-ter in-dices are a l-lowed Underfull \hbox (badness 4341) in paragraph at lines 12340--12349 \T1/ptm/m/n/10 and no par-tial match-ing is done. The se-man-tics of these op-e r-a-tions are those of [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] Underfull \hbox (badness 6236) in paragraph at lines 12999--13002 []\T1/ptm/m/n/10 For \T1/zi4/m/n/10 iconv \T1/ptm/m/n/10 this will give the im- ple-men-ta-tion as well as the ver-sion, for ex-am-ple [187] [188] [189] [190] [191] [192] Underfull \hbox (badness 2253) in paragraph at lines 13421--13423 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [193] Underfull \hbox (badness 1565) in paragraph at lines 13492--13496 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/ 10 , and [194] Underfull \hbox (badness 10000) in paragraph at lines 13536--13538 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m /n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with [195] [196] Underfull \hbox (badness 1466) in paragraph at lines 13676--13679 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/ zi4/m/n/10 file.copy \T1/ptm/m/n/10 and [197] Underfull \hbox (badness 10000) in paragraph at lines 13795--13799 [][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [ ][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 13806--13809 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [198] [199] [200] [201] Underfull \hbox (badness 3965) in paragraph at lines 14088--14092 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] Underfull \hbox (badness 4429) in paragraph at lines 14850--14853 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] \T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for [214] Underfull \hbox (badness 10000) in paragraph at lines 14950--14952 []\T1/ptm/m/n/10 If you set \T1/zi4/m/n/10 format \T1/ptm/m/n/10 it over-rides the set-ting of \T1/zi4/m/n/10 mode\T1/ptm/m/n/10 , so Underfull \hbox (badness 10000) in paragraph at lines 14956--14960 []\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b ers on the dec-i-mal point, so [215] Underfull \hbox (badness 10000) in paragraph at lines 14995--14999 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt m/m/n/10 3.2.0: for use Underfull \hbox (badness 4156) in paragraph at lines 14995--14999 \T1/ptm/m/n/10 within [][]\T1/zi4/m/n/10 print[][][] \T1/ptm/m/n/10 meth-ods in pack-ages which might be used with ear-lier ver-sions: use [216] Underfull \vbox (badness 10000) has occurred while \output is active [217] [218] [219] [220] [221] [222] [223] [224] Underfull \hbox (badness 2452) in paragraph at lines 15587--15591 []\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 15587--15591 \T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_ WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and [225] [226] Underfull \hbox (badness 1092) in paragraph at lines 15760--15765 [][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t he DLL has been loaded us-ing [227] [228] [229] [230] Underfull \hbox (badness 6741) in paragraph at lines 16011--16015 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \ T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10 , [231] [232] [233] [234] Underfull \hbox (badness 1867) in paragraph at lines 16317--16324 []\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][] [] (or char-ac-ter string for [235] [236] [237] [238] Underfull \vbox (badness 10000) has occurred while \output is active [239] [240] Underfull \hbox (badness 3679) in paragraph at lines 16727--16729 []\T1/ptm/m/n/10 The TRE li-brary of Ville Lau-rikari ([][]$\T1/zi4/m/n/10 http : / / laurikari . net / tre/$[][]\T1/ptm/m/n/10 ) is used ex-cept for [241] [242] [243] [244] [245] [246] [247] [248] Underfull \hbox (badness 1478) in paragraph at lines 17292--17295 []\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [249] [250] [251] Underfull \hbox (badness 10000) in paragraph at lines 17545--17547 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 http : / / www . unicode . org / reports / tr35 / [252] [253] [254] [255] [256] [257] [258] [259] [260] Underfull \hbox (badness 1442) in paragraph at lines 18136--18138 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see [261] Underfull \hbox (badness 2452) in paragraph at lines 18228--18244 [][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 , [262] [263] [264] [265] [266] [267] Underfull \hbox (badness 1248) in paragraph at lines 18642--18645 []\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n /10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/ m/n/10 , [268] [269] [270] [271] Underfull \hbox (badness 4739) in paragraph at lines 18900--18902 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [272] [273] [274] [275] [276] [277] [278] [279] [280] [281] [282] [283] [284] [285] [286] [287] Underfull \hbox (badness 2469) in paragraph at lines 19917--19922 []\T1/ptm/m/n/10 In late 2017 a \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 in-stal-l a-tion was seen di-vided into two li-braries, \T1/zi4/m/n/10 libcurl \T1/ptm/m/ n/10 and [288] Underfull \hbox (badness 10000) in paragraph at lines 19931--19938 [][][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / sslcerts . html$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / Underfull \hbox (badness 10000) in paragraph at lines 20005--20009 []\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory Underfull \hbox (badness 2460) in paragraph at lines 20005--20009 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/ 10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T 1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10 ' [289] [290] Underfull \hbox (badness 1509) in paragraph at lines 20140--20147 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 library \T1/ptm/m/n/10 is called with no \T1 /zi4/m/n/10 package \T1/ptm/m/n/10 or \T1/zi4/m/n/10 help \T1/ptm/m/n/10 ar-gu- ment, it lists all avail-able pack-ages Underfull \hbox (badness 1552) in paragraph at lines 20140--20147 \T1/ptm/m/n/10 Use \T1/zi4/m/n/10 .packages(all = TRUE) \T1/ptm/m/n/10 to ob-ta in just the names of all avail-able pack-ages, and Underfull \hbox (badness 1014) in paragraph at lines 20156--20161 []\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1 0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if [291] [292] [293] [294] [295] [296] [297] [298] [299] [300] [301] Underfull \hbox (badness 1264) in paragraph at lines 20907--20912 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [302] Underfull \hbox (badness 4441) in paragraph at lines 20936--20939 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory \T1/zi4/m/n/10 "LC_ALL" \T1/ptm/ m/n/10 sets only cat-e-gories \T1/zi4/m/n/10 "LC_COLLATE"\T1/ptm/m/n/10 , \T1/z i4/m/n/10 "LC_CTYPE"\T1/ptm/m/n/10 , [303] [304] [305] [306] [307] [308] [309] [310] [311] [312] Underfull \hbox (badness 10000) in paragraph at lines 21670--21672 []\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n /10 has the prop-erty that [313] [314] [315] [316] [317] [318] [319] [320] [321] [322] [323] [324] [325] [326] [327] [328] Underfull \hbox (badness 1077) in paragraph at lines 22705--22711 \T1/zi4/m/n/10 / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm/m/n/10 , [][ ]$\T1/zi4/m/n/10 http : / / tukaani . org / xz/$[][] \T1/ptm/m/n/10 and [][]$\T 1/zi4/m/n/10 https : / / en . wikipedia . [329] [330] Underfull \hbox (badness 1484) in paragraph at lines 22868--22876 \T1/ptm/m/n/10 to al-low more (up to 3Gb). See [][]$\T1/zi4/m/n/10 https : / / www . microsoft . com / whdc / system / platform / [331] [332] [333] [334] Underfull \hbox (badness 2790) in paragraph at lines 23153--23156 []\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s ages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 23153--23156 \T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m es-sages, so can be sup-pressed by [335] [336] [337] [338] Underfull \hbox (badness 1194) in paragraph at lines 23435--23438 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 . It calls [339] [340] [341] Underfull \hbox (badness 10000) in paragraph at lines 23641--23647 []\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 , \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond- ing Underfull \hbox (badness 7379) in paragraph at lines 23641--23647 \T1/ptm/m/n/10 list, i.e., \T1/zi4/m/n/10 names(as.list(env, all.names = TRUE)) \T1/ptm/m/n/10 which are also given by Underfull \hbox (badness 10000) in paragraph at lines 23651--23654 []\T1/ptm/m/n/10 It is pos-si-ble to up-date just part of the names at-tribute via the gen-eral rules: Underfull \hbox (badness 10000) in paragraph at lines 23651--23654 \T1/ptm/m/n/10 see the ex-am-ples. This works be-cause the ex-pres-sion there i s eval-u-ated as [342] [343] [344] [345] [346] [347] Underfull \hbox (badness 10000) in paragraph at lines 24022--24025 []\T1/ptm/m/n/10 optional [][]\T1/zi4/m/n/10 logical[][][] \T1/ptm/m/n/10 even- tu-ally to be passed to \T1/zi4/m/n/10 print()\T1/ptm/m/n/10 , used by [348] [349] [350] [351] [352] [353] [354] [355] Underfull \hbox (badness 10000) in paragraph at lines 24614--24616 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m ore ef-fi-cient than [356] [357] [358] [359] Underfull \hbox (badness 1199) in paragraph at lines 24858--24864 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 is.numeric \T1/ptm/m/n/ 10 re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode [][][] \T1/zi4/m/n/10 "numeric" Underfull \hbox (badness 2027) in paragraph at lines 24858--24864 \T1/ptm/m/n/10 ([][]type[][][] \T1/zi4/m/n/10 "double" \T1/ptm/m/n/10 or type \ T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 ) and not a fac-tor, and \T1/zi4/m/n/10 F ALSE \T1/ptm/m/n/10 oth-er-wise. That is, [360] [361] [362] [363] [364] [365] [366] [367] Underfull \hbox (badness 1038) in paragraph at lines 25450--25458 []\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/ 10 R \T1/ptm/m/n/10 starts up. Ini-tially Underfull \hbox (badness 1881) in paragraph at lines 25459--25462 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 25478--25480 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [368] Underfull \hbox (badness 10000) in paragraph at lines 25587--25597 []\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/zi4/m /n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to Underfull \hbox (badness 2142) in paragraph at lines 25598--25604 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able [369] Underfull \hbox (badness 1968) in paragraph at lines 25634--25639 []\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 25644--25646 []\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v alue [370] [371] Underfull \hbox (badness 10000) in paragraph at lines 25907--25913 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/ n/10 setRepositories[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 25907--25913 \T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "https://bioconductor.org"\T1/ ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 25907--25913 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de"\ T1/ptm/m/n/10 '. Can be set by [372] Underfull \hbox (badness 10000) in paragraph at lines 25920--25923 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][ ][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10 and Underfull \hbox (badness 2689) in paragraph at lines 25944--25946 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see Underfull \hbox (badness 10000) in paragraph at lines 25976--25981 []\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/ 10 (and in-di-rectly Underfull \hbox (badness 1629) in paragraph at lines 25982--25993 \T1/ptm/m/n/10 si-ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi 4/m/n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use an d Underfull \hbox (badness 7203) in paragraph at lines 25994--25997 []\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/ n/10 and Underfull \hbox (badness 3713) in paragraph at lines 26004--26016 \T1/ptm/m/n/10 Pos-si-ble val-ues are \T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (t he de-fault ex-cept un-der a CRAN ma-cOS build), Underfull \hbox (badness 7944) in paragraph at lines 26004--26016 \T1/zi4/m/n/10 "mac.binary.el-capitan" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "both" \T1/ptm/m/n/10 (the de-fault for CRAN ma-cOS builds). Underfull \hbox (badness 2351) in paragraph at lines 26004--26016 \T1/ptm/m/n/10 Win-dows uses \T1/zi4/m/n/10 "win.binary"\T1/ptm/m/n/10 . (\T1/z i4/m/n/10 "mac.binary.mavericks"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "mac.binary.leo pard"\T1/ptm/m/n/10 , [373] Underfull \hbox (badness 10000) in paragraph at lines 26018--26025 []\T1/ptm/m/n/10 URLs of the repos-i-to-ries for use by [][]\T1/zi4/m/n/10 upda te.packages[][][]\T1/ptm/m/n/10 . De-faults to Underfull \hbox (badness 10000) in paragraph at lines 26018--26025 \T1/zi4/m/n/10 c(CRAN="@CRAN@")\T1/ptm/m/n/10 , a value that causes some util-i -ties to prompt for a Underfull \hbox (badness 6380) in paragraph at lines 26018--26025 \T1/ptm/m/n/10 CRAN mir-ror. To avoid this do set the CRAN mir-ror, by some-thi ng like Underfull \hbox (badness 1874) in paragraph at lines 26018--26025 \T1/zi4/m/n/10 local({r <- getOption("repos"); r["CRAN"] <- "http://my.local.cr an"; [374] [375] [376] [377] Underfull \hbox (badness 10000) in paragraph at lines 26362--26366 []\T1/ptm/m/n/10 The outer prod-uct of the ar-rays \T1/zi4/m/n/10 X \T1/ptm/m/n /10 and \T1/zi4/m/n/10 Y \T1/ptm/m/n/10 is the ar-ray \T1/zi4/m/n/10 A \T1/ptm/ m/n/10 with di-men-sion Underfull \hbox (badness 10000) in paragraph at lines 26362--26366 \T1/zi4/m/n/10 c(dim(X), dim(Y)) \T1/ptm/m/n/10 where el-e-ment \T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] [378] [379] [380] [381] [382] Underfull \hbox (badness 1735) in paragraph at lines 26681--26685 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 paste() \T1/ptm/m/n/10 co-erces [][]\ T1/zi4/m/n/10 NA_character_[][][]\T1/ptm/m/n/10 , the char-ac-ter miss-ing valu e, to \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 which [383] [384] [385] [386] [387] [388] [389] [390] [391] Underfull \hbox (badness 2726) in paragraph at lines 27256--27259 []\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di -cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put, see [392] [393] [394] [395] [396] [397] [398] [399] [400] [401] [402] [403] Underfull \hbox (badness 1052) in paragraph at lines 28085--28090 []\T1/zi4/m/n/10 qr.X \T1/ptm/m/n/10 re-turns $\OML/cmm/b/it/10 X$\T1/ptm/m/n/1 0 , the orig-i-nal ma-trix from which the qr ob-ject was con-structed, pro-vide d [404] [405] [406] [407] [408] [409] [410] [411] [412] [413] [414] [415] Underfull \hbox (badness 1533) in paragraph at lines 28917--28920 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [416] [417] Underfull \hbox (badness 1163) in paragraph at lines 29080--29091 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\ T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [418] [419] [420] [421] [422] [423] [424] [425] [426] [427] [428] [429] [430] [431] [432] [433] [434] [435] [436] [437] [438] [439] Underfull \hbox (badness 10000) in paragraph at lines 30613--30617 []\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n /10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 30613--30617 \T1/zi4/m/n/10 "(?[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t he matches are also re-turned by name. [440] Underfull \hbox (badness 6188) in paragraph at lines 30635--30637 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p ubs . opengroup . org / onlinepubs / 9699919799 / [441] [442] [443] [444] [445] [446] [447] [448] Underfull \hbox (badness 1655) in paragraph at lines 31178--31180 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm /m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for [449] [450] [451] [452] [453] [454] [455] [456] [457] [458] Underfull \hbox (badness 10000) in paragraph at lines 31886--31890 []\T1/zi4/m/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my c ur-rent workspace', i.e., [459] [460] [461] [462] Underfull \hbox (badness 2302) in paragraph at lines 32137--32144 []\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d e-fined as $[]$, Underfull \hbox (badness 2837) in paragraph at lines 32137--32144 \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non -missing Underfull \hbox (badness 3333) in paragraph at lines 32137--32144 \T1/ptm/m/n/10 val-ues. In the case \T1/zi4/m/n/10 center = TRUE\T1/ptm/m/n/10 , this is the same as the stan-dard de-vi-a-tion, Underfull \hbox (badness 2181) in paragraph at lines 32137--32144 \T1/ptm/m/n/10 but in gen-eral it is not. (To scale by the stan-dard de-vi-a-ti ons with-out cen-ter-ing, use [463] [464] Underfull \hbox (badness 2261) in paragraph at lines 32293--32298 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i t ap-plies to all fields; oth-er-wise, if Underfull \hbox (badness 10000) in paragraph at lines 32320--32326 []\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac- ters [465] Underfull \hbox (badness 10000) in paragraph at lines 32396--32401 []\T1/ptm/m/n/10 Note that since \T1/zi4/m/n/10 sep \T1/ptm/m/n/10 is a sep-a-r a-tor and not a ter-mi-na-tor, read-ing a file by [466] [467] [468] [469] [470] [471] [472] [473] [474] [475] [476] [477] [478] [479] [480] [481] [482] [483] [484] [485] [486] [487] [488] [489] [490] [491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501] Underfull \vbox (badness 10000) has occurred while \output is active [502] [503] [504] [505] [506] [507] [508] Underfull \hbox (badness 1072) in paragraph at lines 35438--35442 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 35443--35447 []\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/ 10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 - -no-init-file\T1/ptm/m/n/10 ', [509] Underfull \hbox (badness 10000) in paragraph at lines 35471--35477 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 35471--35477 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 35471--35477 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in Underfull \hbox (badness 3343) in paragraph at lines 35483--35490 \T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 35483--35490 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 35483--35490 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [510] [511] [512] [513] [514] Underfull \hbox (badness 10000) in paragraph at lines 35824--35830 []\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form at \T1/ptm/m/n/10 meth-ods is Underfull \hbox (badness 1264) in paragraph at lines 35824--35830 \T1/zi4/m/n/10 "%Y-%m-%d %H:%M:%S" \T1/ptm/m/n/10 if any el-e-ment has a time c om-po-nent which is [515] [516] [517] [518] [519] [520] [521] [522] [523] [524] [525] [526] [527] [528] [529] [530] [531] [532] [533] [534] [535] [536] [537] [538] Underfull \vbox (badness 10000) has occurred while \output is active [539] [540] [541] Underfull \hbox (badness 3333) in paragraph at lines 37674--37679 []\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi s may need to be matched ex-plic-itly: for ex-am-ple [542] [543] [544] [545] [546] [547] [548] [549] [550] [551] Underfull \hbox (badness 1472) in paragraph at lines 38306--38309 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee p their source in-clud-ing com-ments, see [552] [553] [554] [555] [556] [557] [558] [559] [560] [561] [562] [563] [564] Underfull \hbox (badness 10000) in paragraph at lines 39212--39216 []\T1/ptm/m/n/10 On 64-bit plat-forms \T1/zi4/m/n/10 bin \T1/ptm/m/n/10 can hav e $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., [565] [566] [567] [568] Underfull \hbox (badness 10000) in paragraph at lines 39462--39465 [][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [ ][]$https : / / developer . r-[]project . org / [569] Underfull \hbox (badness 10000) in paragraph at lines 39580--39584 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 getTaskCallbackNames [][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer . [570] Underfull \hbox (badness 10000) in paragraph at lines 39642--39646 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[ ][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer . [571] [572] [573] [574] [575] [576] [577] Underfull \vbox (badness 1681) has occurred while \output is active [578] [579] Underfull \hbox (badness 4013) in paragraph at lines 40255--40257 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / www . twinsun . com / tz / tz-[]link . [580] [581] [582] [583] [584] Underfull \vbox (badness 10000) has occurred while \output is active [585] [586] [587] [588] [589] [590] [591] Underfull \hbox (badness 3460) in paragraph at lines 41136--41139 []\T1/ptm/m/n/10 a [][]con-nec-tion[][][], or a char-ac-ter string nam-ing the file to print to (via Underfull \hbox (badness 1990) in paragraph at lines 41143--41151 []\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e r-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 41143--41151 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less [592] [593] [594] [595] Underfull \hbox (badness 10000) in paragraph at lines 41420--41423 []\T1/ptm/m/n/10 On most plat-forms `file' in-cludes sym-bolic links, fi-fos an d sock-ets. [596] [597] [598] Underfull \hbox (badness 1917) in paragraph at lines 41648--41655 []\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/ ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute [599] [600] [601] [602] [603] [604] [605] [606] [607] [608] [609] Underfull \hbox (badness 3668) in paragraph at lines 42369--42371 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di- ately, even if [610] [611] Underfull \hbox (badness 2401) in paragraph at lines 42497--42501 []\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [612] [613] Underfull \hbox (badness 2111) in paragraph at lines 42686--42691 \T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n ot empty, these are used as col-umn names. [614] Underfull \hbox (badness 7362) in paragraph at lines 42702--42707 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m /n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is [615] [616] [617] [618] [619] [620] [621] [622] Underfull \hbox (badness 5417) in paragraph at lines 43281--43285 []\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [623] Underfull \hbox (badness 10000) in paragraph at lines 43342--43346 []\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard ' reg-exps, in-clud-ing el-e-ments named [624]) (./compiler-pkg.tex Chapter 2. [625] [626] [627] [628]) (./datasets-pkg.tex Chapter 3. [629] [630] [631] [632] [633] [634] Underfull \vbox (badness 1472) has occurred while \output is active [635] [636] [637] [638] [639] [640] [641] [642] [643] Underfull \hbox (badness 1097) in paragraph at lines 1031--1035 []\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th e iden-ti-fi-ca-tion of crim-i-nals. [644] [645] [646] [647] [648] [649] [650] [651] [652] [653] [654] [655] [656] [657] [658] [659] [660] [661] [662] [663] [664] [665] Overfull \vbox (4.26088pt too high) has occurred while \output is active [666] [667] [668] [669] [670] [671] Overfull \vbox (13.87083pt too high) has occurred while \output is active [672] Underfull \vbox (badness 2376) has occurred while \output is active [673] [674] Overfull \vbox (12.25539pt too high) has occurred while \output is active [675] [676] Overfull \vbox (17.12102pt too high) has occurred while \output is active [677] [678] [679] [680] [681] [682] [683] [684] [685] [686] [687] Overfull \vbox (10.49593pt too high) has occurred while \output is active [688] Overfull \vbox (15.49593pt too high) has occurred while \output is active [689] [690] [691] [692] [693] [694] [695] [696] [697] [698] [699] [700] [701] [702] [703]) (./grDevices-pkg.tex [704] Chapter 4. [705] [706] [707] [708] [709] [710] [711] [712] [713] [714] [715] [716] [717] [718] [719] [720] Underfull \hbox (badness 5175) in paragraph at lines 1082--1084 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [721] [722] [723] Underfull \hbox (badness 1852) in paragraph at lines 1279--1282 []\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col- ors that will be used in plot-ting, call-ing [724] [725] [726] Underfull \hbox (badness 1490) in paragraph at lines 1485--1490 \T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\ T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/ 10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and [727] [728] Underfull \hbox (badness 10000) in paragraph at lines 1608--1612 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , the func-tion also re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 when [729] [730] [731] [732] Underfull \hbox (badness 1325) in paragraph at lines 1891--1901 \T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/ 10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1 /ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 , [733] Underfull \hbox (badness 10000) in paragraph at lines 1996--1998 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [734] [735] [736] Underfull \hbox (badness 6758) in paragraph at lines 2157--2160 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [737] [738] [739] [740] [741] [742] [743] [744] [745] Underfull \hbox (badness 10000) in paragraph at lines 2750--2751 Underfull \vbox (badness 10000) has occurred while \output is active [746] [747] [748] [749] [750] [751] [752] Underfull \hbox (badness 10000) in paragraph at lines 3248--3253 []\T1/zi4/m/n/10 nclass.FD \T1/ptm/m/n/10 uses the Freedman-Diaconis choice bas ed on the inter-quartile range [753] [754] [755] [756] Underfull \hbox (badness 3302) in paragraph at lines 3514--3517 []\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv e a C in-te-ger for-mat such as Underfull \hbox (badness 2662) in paragraph at lines 3528--3530 []\T1/ptm/m/n/10 title string to em-bed as the `\T1/zi4/m/n/10 /Title\T1/ptm/m/ n/10 ' field in the file. De-faults to [757] [758] [759] [760] [761] [762] [763] [764] [765] [766] [767] [768] Underfull \hbox (badness 1067) in paragraph at lines 4355--4362 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [769] [770] [771] [772] Underfull \hbox (badness 1789) in paragraph at lines 4595--4597 []\T1/ptm/m/n/10 title string to em-bed as the \T1/zi4/m/n/10 Title \T1/ptm/m/n /10 com-ment in the file. De-faults to Underfull \hbox (badness 1377) in paragraph at lines 4645--4650 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [773] Underfull \hbox (badness 2671) in paragraph at lines 4672--4680 \T1/ptm/m/n/10 For use in this way you will prob-a-bly want to use [][]\T1/zi4/ m/n/10 setEPS[][][]() \T1/ptm/m/n/10 to set the de-faults as Underfull \hbox (badness 1418) in paragraph at lines 4721--4728 \T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4 /m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/ zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm /m/n/10 , Underfull \hbox (badness 2443) in paragraph at lines 4729--4738 \T1/ptm/m/n/10 PostScript de-vice is us-ing URW fonts, you will ob-tain ac-cess to more char-ac-ters and Underfull \hbox (badness 2653) in paragraph at lines 4729--4738 \T1/ptm/m/n/10 more ap-pro-pri-ate met-rics by us-ing these names. To make thes e eas-ier to re-mem-ber, Underfull \hbox (badness 1755) in paragraph at lines 4739--4741 []\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East Asian lan-guages -- see [774] [775] Underfull \hbox (badness 1377) in paragraph at lines 4850--4855 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \ T1/zi4/m/n/10 "rgb" \T1/ptm/m/n/10 (which is RGB+gray) and Underfull \hbox (badness 7344) in paragraph at lines 4910--4912 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [776] [777] Underfull \hbox (badness 2035) in paragraph at lines 5034--5043 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5034--5043 \T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/ n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 5034--5043 \T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 , [778] [779] Underfull \hbox (badness 10000) in paragraph at lines 5102--5109 []\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4 /m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu / Underfull \hbox (badness 2189) in paragraph at lines 5102--5109 \T1/zi4/m/n/10 chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Lunde's CJK V re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly . [780] [781] Underfull \hbox (badness 1546) in paragraph at lines 5244--5252 []\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T 1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/ n/10 , [782] Underfull \hbox (badness 1648) in paragraph at lines 5321--5325 []\T1/ptm/m/n/10 title for the Quartz win-dow (ap-plies to on-screen out-put on ly), de-fault [783] [784] [785] [786] [787] [788] Underfull \hbox (badness 10000) in paragraph at lines 5772--5775 []\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red /green/blue) into HSV space [789] [790] [791] [792] [793] [794] [795] Underfull \hbox (badness 1189) in paragraph at lines 6169--6171 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [796] Underfull \hbox (badness 10000) in paragraph at lines 6267--6269 []\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK lan-guages and [797] [798] [799] [800] Underfull \hbox (badness 3780) in paragraph at lines 6558--6564 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1 0 "AvantGarde"\T1/ptm/m/n/10 , [801] [802] [803] Underfull \hbox (badness 2680) in paragraph at lines 6759--6761 []\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of [804] [805] [806]) (./graphics-pkg.tex Chapter 5. [807] [808] [809] [810] [811] [812] [813] [814] [815] [816] Underfull \hbox (badness 10000) in paragraph at lines 687--694 []\T1/zi4/m/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/p tm/m/n/10 in-ter-face to the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/pt m/m/n/10 in [817] [818] [819] [820] Underfull \vbox (badness 10000) has occurred while \output is active [821] [822] [823] [824] [825] Underfull \hbox (badness 4634) in paragraph at lines 1262--1265 [][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n /10 , [826] [827] [828] [829] [830] [831] [832] [833] [834] [835] [836] [837] [838] [839] [840] [841] Underfull \hbox (badness 1009) in paragraph at lines 2296--2303 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [842] [843] [844] [845] [846] [847] [848] [849] [850] [851] [852] [853] [854] [855] [856] [857] [858] [859] [860] [861] [862] Underfull \vbox (badness 10000) has occurred while \output is active [863] [864] [865] [866] Underfull \hbox (badness 1867) in paragraph at lines 3950--3954 []\T1/ptm/m/n/10 vector of back-ground (fill) col-ors for the open plot sym-bol s given by [867] [868] [869] [870] [871] [872] [873] Underfull \hbox (badness 1924) in paragraph at lines 4400--4405 []\T1/ptm/m/n/10 a func-tion which in-di-cates what should hap-pen when the dat a con-tain [874] Underfull \hbox (badness 2529) in paragraph at lines 4431--4434 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used: see [875] [876] [877] [878] Underfull \hbox (badness 10000) in paragraph at lines 4781--4787 []\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n /10 (width, height) \T1/ptm/m/n/10 in user co-or-di-nate units. Underfull \hbox (badness 5908) in paragraph at lines 4781--4787 \T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin" ) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that [879] [880] Underfull \hbox (badness 10000) in paragraph at lines 4912--4915 [881 ] Underfull \hbox (badness 10000) in paragraph at lines 4973--4975 [882 ] [883] Underfull \hbox (badness 10000) in paragraph at lines 5163--5165 []\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2 :6\T1/ptm/m/n/10 ) cor-re-spond to [884] [885] [886] [887] [888] [889] [890] [891] [892] [893] [894] [895] [896] [897] [898] [899] [900] [901] [902] [903] [904] [905] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6634--6635 [][] [906 ] [907] Underfull \vbox (badness 10000) has occurred while \output is active [908] [909] [910] [911] [912] [913] [914] [915] [916] Underfull \hbox (badness 1048) in paragraph at lines 7343--7348 \T1/ptm/m/n/10 avoided (see the Warn-ings sec-tion be-low). Split-screen mode i s ex-ited by the com-mand [917] [918] Underfull \hbox (badness 1102) in paragraph at lines 7459--7462 []\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d rawn be-tween the point \T1/zi4/m/n/10 (x0[i], y0[i]) \T1/ptm/m/n/10 and the po int [919] [920] [921] [922] [923] [924] [925] [926] [927] [928] [929] [930] [931] Underfull \hbox (badness 1043) in paragraph at lines 8300--8304 []\T1/ptm/m/n/10 For \T1/zi4/m/n/10 number[i] == 1\T1/ptm/m/n/10 , a (slightly en-larged) usual plot-ting sym-bol (\T1/zi4/m/n/10 pch\T1/ptm/m/n/10 ) is drawn . For [932] [933] [934] [935] [936] [937] Underfull \hbox (badness 10000) in paragraph at lines 8707--8709 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color Underfull \hbox (badness 10000) in paragraph at lines 8709--8711 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color [938]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.unit s}) has been already used, duplicate ignored \relax l.8789 \HeaderA{units}{Graphical Units}{units} [939] [940] [941] [942]) (./grid-pkg.tex Chapter 6. [943] [944] [945] [946] [947] [948] Underfull \hbox (badness 2680) in paragraph at lines 392--395 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1 /zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio n of [949] [950] [951] [952] [953] [954] [955] [956] [957] Underfull \hbox (badness 4279) in paragraph at lines 972--981 [][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m /n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 unit[][][]\T1/ptm/m/n/10 , [958] [959] [960] [961] [962] [963] [964] [965] [966] [967] [968] [969] [970] [971] [972] [973] [974] [975] [976] [977] [978] [979] [980] [981] [982] [983] [984] [985] [986] [987] [988] [989] [990] [991] [992] [993] [994] [995] [996] [997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009] [1010] Underfull \hbox (badness 1067) in paragraph at lines 4355--4358 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1011] [1012] [1013] [1014] Underfull \hbox (badness 7256) in paragraph at lines 4600--4602 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1015] [1016] [1017] [1018] [1019] [1020] [1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033] Underfull \hbox (badness 10000) in paragraph at lines 5877--5883 \T1/ptm/m/n/10 and to spec-ify the min-i-mum or max-i-mum of a list of unit ob- jects (e.g., [1034] [1035] [1036] [1037] [1038] [1039] [1040] [1041] Underfull \hbox (badness 7649) in paragraph at lines 6356--6359 []\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by do-ing some-thing like [1042] [1043] [1044] [1045]) (./methods-pkg.tex [1046] Chapter 7. [1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] Underfull \vbox (badness 10000) has occurred while \output is active [1055] Underfull \vbox (badness 10000) has occurred while \output is active [1056] [1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064] Underfull \hbox (badness 2237) in paragraph at lines 1385--1387 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \ T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package "\T1/ptm/m/n/10 , also of class [1065] [1066] [1067] [1068] [1069] [1070] [1071] [1072] Underfull \hbox (badness 1077) in paragraph at lines 1932--1939 []\T1/ptm/m/n/10 Two vir-tual classes are sup-plied to test for ref-er-ence ob- jects: \T1/zi4/m/n/10 is(x, "refClass") \T1/ptm/m/n/10 tests Underfull \hbox (badness 10000) in paragraph at lines 1981--1986 []\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c an be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1981--1986 \T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1 0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the [1073] [1074] [1075] Underfull \hbox (badness 1242) in paragraph at lines 2214--2219 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use \T1/zi4/m/n/10 where = [1076] [1077] [1078] [1079] [1080] Underfull \hbox (badness 10000) in paragraph at lines 2574--2577 []\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o b-jects of class [1081] [1082] Underfull \hbox (badness 1132) in paragraph at lines 2714--2718 []\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1 0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re -turned re-sult is in Underfull \hbox (badness 1033) in paragraph at lines 2746--2751 \T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store s the [1083] [1084] [1085] [1086] [1087] [1088] [1089] Underfull \hbox (badness 1102) in paragraph at lines 3303--3305 []\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na me of the pack-age (with-out the ex-tra-ne-ous [1090] [1091] [1092] [1093] [1094] Underfull \hbox (badness 10000) in paragraph at lines 3634--3639 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these classes takes spe-cial ar-gu-ments Underfull \hbox (badness 10000) in paragraph at lines 3642--3651 []\T1/ptm/m/n/10 The [1095] [1096] Overfull \hbox (123.02902pt too wide) in paragraph at lines 3762--3763 [] \T1/zi4/m/n/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longitude = "numeric", altitude = "numeric")) Underfull \hbox (badness 10000) in paragraph at lines 3762--3763 [1097] Overfull \hbox (16.41006pt too wide) in paragraph at lines 3846--3847 []\T1/zi4/m/n/10 Currency <- setClass("Currency", slots = c(unit = "character") , contains = "numeric") [1098] [1099] [1100] [1101] [1102] [1103] [1104] [1105] Underfull \hbox (badness 1436) in paragraph at lines 4443--4446 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "SealedMethodDefinition" \T1/ptm/m/n/ 10 is cre-ated by a call to [][]\T1/zi4/m/n/10 setMethod[][][] \T1/ptm/m/n/10 w ith ar-gu-ment Underfull \hbox (badness 1769) in paragraph at lines 4472--4478 []\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4472--4478 \T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T 1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by [1106] Underfull \hbox (badness 1092) in paragraph at lines 4531--4538 \T1/ptm/m/n/10 names cor-re-spond-ing to some or all of the for-mal ar-gu-ments . In the pre-vi-ous ex-am-ple, Underfull \hbox (badness 1117) in paragraph at lines 4531--4538 \T1/ptm/m/n/10 if se-lect-ing class \T1/zi4/m/n/10 "track" \T1/ptm/m/n/10 for \ T1/zi4/m/n/10 x\T1/ptm/m/n/10 , find-ing that the se-lec-tion was an-other meth -ods list and [1107] [1108] [1109] [1110] [1111] [1112] [1113] [1114] Underfull \vbox (badness 10000) has occurred while \output is active [1115] Underfull \vbox (badness 10000) has occurred while \output is active [1116] [1117] Underfull \hbox (badness 10000) in paragraph at lines 5355--5356 []\T1/zi4/m/n/10 unique.uncased <- function(x, incomparables = FALSE, ...) [1118] Underfull \hbox (badness 4036) in paragraph at lines 5437--5440 []\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10 the method to use in re-sponse to a [1119] Underfull \hbox (badness 3803) in paragraph at lines 5512--5514 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1120] [1121] [1122] Underfull \hbox (badness 1087) in paragraph at lines 5744--5749 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1123] [1124] [1125] [1126] [1127] [1128] [1129] [1130] Underfull \hbox (badness 1675) in paragraph at lines 6451--6457 \T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1131] [1132] [1133] [1134] Underfull \vbox (badness 10000) has occurred while \output is active [1135] [1136] [1137]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.S4}) has been already used, duplicate ignored \relax l.6973 \aliasA{S4}{S3Part}{S4} [1138] [1139] [1140]pdfTeX warning (ext4): desti nation with the same identifier (name{Rfn.Complex}) has been already used, dupl icate ignored \relax l.7229 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate ignored \relax l.7231 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) has been already used, duplicate igno red \relax l.7232 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination wi th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7234 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor ed \relax l.7235 \aliasA{Summary}{S4groupGeneric}{Summary} [1141] Underfull \hbox (badness 2050) in paragraph at lines 7296--7300 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1142] [1143] Underfull \hbox (badness 1286) in paragraph at lines 7484--7486 []\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal ly [1144] [1145] [1146] [1147] [1148] [1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] [1157] [1158] [1159] [1160] [1161] [1162] [1163] [1164] [1165] [1166] [1167] [1168] [1169] [1170] [1171] [1172] [1173] [1174] [1175] [1176] [1177] [1178] [1179] [1180] [1181] [1182] [1183] Underfull \hbox (badness 1852) in paragraph at lines 10564--10568 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1184] [1185] [1186]) (./parallel-pkg.tex Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4 /m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[ ][][]: see [1187] [1188] [1189] [1190] [1191] [1192] [1193] [1194] [1195] [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] [1204] [1205] Underfull \hbox (badness 3386) in paragraph at lines 1339--1342 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R andom.seed \T1/ptm/m/n/10 when the [1206] [1207] [1208]) (./splines-pkg.tex Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1209] [1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218] [1219] [1220] [1221] [1222]) (./stats-pkg.tex Chapter 10. [1223] [1224] [1225] [1226] [1227] [1228] [1229] [1230] [1231] [1232] [1233] [1234] [1235] Underfull \hbox (badness 1412) in paragraph at lines 847--849 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm \T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for [1236] [1237] [1238] [1239] [1240] [1241] [1242] Underfull \hbox (badness 2503) in paragraph at lines 1328--1331 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1243] [1244] Underfull \hbox (badness 10000) in paragraph at lines 1508--1512 []\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov", "lm") \T1/ptm/m/n/ 10 or for mul-ti-ple re-sponses of class [1245] [1246] [1247] [1248] Underfull \hbox (badness 10000) in paragraph at lines 1773--1777 []\T1/ptm/m/n/10 function to be called to han-dle miss-ing val-ues. Cur-rently, via Underfull \hbox (badness 1546) in paragraph at lines 1773--1777 \T1/zi4/m/n/10 na.action = na.pass\T1/ptm/m/n/10 , only Yule-Walker method can han-dle miss-ing [1249] [1250] [1251] [1252] [1253] [1254] Underfull \hbox (badness 3965) in paragraph at lines 2183--2185 []\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val id for [1255] [1256] [1257] [1258] [1259] Underfull \hbox (badness 3965) in paragraph at lines 2534--2536 []\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val id for [1260] [1261] [1262] [1263] [1264] [1265] [1266] [1267] [1268] [1269] [1270] Underfull \hbox (badness 2726) in paragraph at lines 3260--3276 \T1/ptm/m/n/10 We have slightly tweaked the orig-i-nal ``TOMS 708'' al-go-rithm , and en-hanced for [1271] [1272] Underfull \hbox (badness 2503) in paragraph at lines 3390--3393 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] [1281] [1282] [1283] [1284] [1285] [1286] [1287] [1288] [1289] [1290] [1291] Underfull \hbox (badness 3989) in paragraph at lines 4634--4641 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1292] [1293] Underfull \hbox (badness 3612) in paragraph at lines 4754--4756 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 "aov" \T1/ptm/m/n/10 method does not re-por t aliased co-ef-fi-cients (see [][]\T1/zi4/m/n/10 alias[][][]\T1/ptm/m/n/10 ) b y de-fault where [1294] [1295] [1296] [1297] [1298] [1299] [1300] Underfull \hbox (badness 2556) in paragraph at lines 5270--5273 []\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/ ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p tm/m/n/10 . For Underfull \hbox (badness 2932) in paragraph at lines 5287--5289 []\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se- quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is given by [1301] [1302] [1303] [1304] Underfull \hbox (badness 1142) in paragraph at lines 5528--5540 \T1/ptm/m/n/10 For \T1/zi4/m/n/10 cov()\T1/ptm/m/n/10 , a non-Pearson method is un-usual but avail-able for the sake of com-plete-ness. [1305] [1306] Underfull \hbox (badness 2503) in paragraph at lines 5680--5684 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1307] [1308] [1309] [1310] [1311] [1312] [1313] [1314] Underfull \hbox (badness 8132) in paragraph at lines 6184--6189 \T1/ptm/m/n/10 then \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is a den-dro-gram of the sa me graph struc-ture as \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and for each node, [1315] [1316] [1317] [1318] Underfull \hbox (badness 7081) in paragraph at lines 6462--6465 []\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 10000) in paragraph at lines 6466--6468 []\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also [1319] [1320] [1321] [1322] [1323] Underfull \vbox (badness 10000) has occurred while \output is active [1324] [1325] [1326] Underfull \vbox (badness 10000) has occurred while \output is active [1327] [1328] [1329] [1330] [1331] Underfull \hbox (badness 10000) in paragraph at lines 7311--7314 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T 1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the [1332] [1333] [1334] [1335] [1336] [1337] [1338] [1339] [1340] [1341] [1342] [1343] [1344] [1345] [1346] [1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355] Underfull \hbox (badness 2626) in paragraph at lines 8953--8956 []\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1356] [1357] Underfull \hbox (badness 2503) in paragraph at lines 9060--9064 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , Underfull \hbox (badness 2564) in paragraph at lines 9112--9121 []\T1/ptm/m/n/10 For larger than $\OT1/cmr/m/n/10 2 \OMS/cmsy/m/n/10 ^^B \OT1/c mr/m/n/10 2$ \T1/ptm/m/n/10 ta-bles and \T1/zi4/m/n/10 hybrid = TRUE\T1/ptm/m/n /10 , asymp-totic chi-squared prob-a-bil-i- Underfull \hbox (badness 1331) in paragraph at lines 9112--9121 \T1/ptm/m/n/10 ties are only used if the `Cochran con-di-tions' (or mod-i-fied ver-sion thereof) spec-i-fied by [1358] [1359] [1360] [1361] [1362] Overfull \hbox (3.53955pt too wide) in paragraph at lines 9434--9436 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Fligner-Killeen test of homogeneity of variances"\T1/ptm/m/n/10 . [1363] [1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375] Underfull \hbox (badness 4518) in paragraph at lines 10362--10367 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1376] [1377] [1378] [1379] [1380] Underfull \hbox (badness 2142) in paragraph at lines 10710--10713 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ Underfull \hbox (badness 1253) in paragraph at lines 10729--10732 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][ ]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it- er-a-tion. Hence, [1381] Underfull \hbox (badness 1708) in paragraph at lines 10791--10795 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1382] [1383] [1384] [1385] [1386] Underfull \hbox (badness 1694) in paragraph at lines 11189--11192 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1387] Underfull \hbox (badness 1867) in paragraph at lines 11208--11217 \T1/ptm/m/n/10 in the row case. If ei-ther is miss-ing, as by de-fault, then th e or-der-ing of the cor-re- [1388] [1389] [1390] [1391] [1392] Underfull \hbox (badness 10000) in paragraph at lines 11516--11519 []\T1/ptm/m/n/10 If one of $\OML/cmm/m/it/10 m; n; k$\T1/ptm/m/n/10 , ex-ceeds [][]\T1/zi4/m/n/10 .Machine[][][]$integer.max\T1/ptm/m/n/10 , cur-rently the eq uiv-a-lent of [1393] [1394]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.hat}) has been already used, duplicate ignored \relax l.11670 \aliasA{hat}{influence.measures}{hat} [1395] [1396] Underfull \hbox (badness 1484) in paragraph at lines 11801--11803 []\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1397] [1398] [1399] [1400] [1401] [1402] [1403] [1404] [1405] Underfull \hbox (badness 4441) in paragraph at lines 12387--12389 []\T1/ptm/m/n/10 vector of dif-fer-enc-ing co-ef-fi-cients, so an ARMA model is fit-ted to Underfull \hbox (badness 10000) in paragraph at lines 12394--12396 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa ult[][][] \T1/ptm/m/n/10 when [1406] [1407] [1408] [1409] [1410] Underfull \hbox (badness 2894) in paragraph at lines 12730--12734 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1411] [1412] [1413] [1414] [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] Underfull \hbox (badness 4518) in paragraph at lines 13480--13485 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1423] [1424] [1425] [1426] [1427] [1428] [1429] [1430] [1431] Underfull \hbox (badness 4518) in paragraph at lines 14132--14137 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1432] [1433] Underfull \hbox (badness 10000) in paragraph at lines 14270--14274 []\T1/ptm/m/n/10 Only for the (de-fault) case \T1/zi4/m/n/10 (surface = Underfull \hbox (badness 1199) in paragraph at lines 14277--14279 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if \T1/zi4/m/n/10 family \T1/ptm/m/n/10 is [1434] [1435] [1436] [1437] [1438] [1439] [1440] [1441] [1442] [1443] [1444] [1445] [1446] [1447] [1448] [1449] Underfull \hbox (badness 2503) in paragraph at lines 15345--15349 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1450] [1451] [1452] [1453] [1454] [1455] [1456] [1457] Underfull \hbox (badness 1584) in paragraph at lines 15857--15863 []\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response \T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(, "offset") \T1 /ptm/m/n/10 and [1458] [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475] [1476] [1477] [1478] [1479] [1480] [1481] [1482] Underfull \hbox (badness 2359) in paragraph at lines 17507--17509 []\T1/ptm/m/n/10 Douglas M. Bates and Saikat De-bRoy: David M. Gay for the For- tran code used by [1483] Underfull \vbox (badness 10000) has occurred while \output is active [1484] Underfull \vbox (badness 10000) has occurred while \output is active [1485] [1486] [1487] [1488] [1489] [1490] [1491] [1492] [1493] [1494] [1495] [1496] Underfull \hbox (badness 1377) in paragraph at lines 18419--18424 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on [1497] Underfull \hbox (badness 1735) in paragraph at lines 18424--18427 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 1454) in paragraph at lines 18437--18441 \T1/ptm/m/n/10 value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + reltol ) \T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 18445--18449 []\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \ T1/ptm/m/n/10 meth-ods if [1498] [1499] [1500] Overfull \hbox (15.73795pt too wide) in paragraph at lines 18669--18669 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Overfull \hbox (3.75941pt too wide) in paragraph at lines 18672--18672 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1501] [1502] [1503] [1504] [1505] [1506] Underfull \hbox (badness 1337) in paragraph at lines 19094--19097 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1507] [1508] [1509] [1510] [1511] [1512] [1513] [1514] Underfull \hbox (badness 3049) in paragraph at lines 19583--19587 []\T1/ptm/m/n/10 In the Cook's dis-tance vs leverage/(1-leverage) plot, con-tou rs of stan-dard-ized resid-u-als [1515] [1516] [1517] [1518] Underfull \hbox (badness 5563) in paragraph at lines 19838--19840 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , add to al-read y ex-ist-ing plot. Only valid for Underfull \hbox (badness 1194) in paragraph at lines 19841--19844 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1519] [1520] [1521] [1522] [1523] [1524] Underfull \hbox (badness 2503) in paragraph at lines 20216--20219 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1525] Underfull \hbox (badness 10000) in paragraph at lines 20243--20245 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1 /ptm/m/n/10 or [1526] [1527] [1528] [1529] [1530] [1531] [1532] [1533] [1534] [1535] [1536] [1537] [1538] [1539] [1540] [1541] Underfull \hbox (badness 10000) in paragraph at lines 21316--21322 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][ ][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 , [1542] [1543] [1544] [1545] [1546] [1547] [1548] [1549] [1550] [1551] [1552] [1553] [1554] [1555] [1556] [1557] [1558] [1559] [1560] [1561] [1562] Underfull \hbox (badness 1337) in paragraph at lines 22662--22668 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1563] [1564] [1565] [1566] [1567] [1568] [1569] [1570] Overfull \hbox (27.74408pt too wide) in paragraph at lines 23214--23214 [] \T1/zi4/m/n/9 t(vapply(1:9, function(typ) quantile(x, prob=prob, type = ty p, ...), quantile(x, prob, type=1)))[] [1571] [1572] [1573] [1574] Underfull \hbox (badness 10000) in paragraph at lines 23465--23468 []\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] Underfull \hbox (badness 10000) in paragraph at lines 24050--24053 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run med(x, k) \T1/ptm/m/n/10 sim-ply has [1584] Underfull \hbox (badness 3690) in paragraph at lines 24102--24106 [][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's end point rule and is called by de-fault from [1585] [1586] [1587] [1588] [1589] [1590] [1591] Underfull \hbox (badness 2165) in paragraph at lines 24581--24586 []\T1/ptm/m/n/10 Each of the fol-low-ing are \T1/zi4/m/n/10 "selfStart" \T1/ptm /m/n/10 mod-els (with ex-am-ples) [][]\T1/zi4/m/n/10 SSasymp[][][]\T1/ptm/m/n/1 0 , [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [1592] [1593] [1594] [1595] Underfull \hbox (badness 1867) in paragraph at lines 24786--24788 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 24799--24803 \T1/ptm/m/n/10 where \T1/zi4/m/n/10 NN <- [][]nobs[][][](object, use.fallback = use.fallback) \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 24799--24803 \T1/zi4/m/n/10 PP <- sum(!is.na([][]coef[][][](object))) \T1/ptm/m/n/10 -- wher e in older \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions this was Underfull \hbox (badness 1132) in paragraph at lines 24799--24803 \T1/zi4/m/n/10 length(coef(object)) \T1/ptm/m/n/10 which is too large in case o f un-de-ter-mined co-ef-fi-cients, e.g., for [1596] [1597] [1598] [1599] [1600] [1601] [1602] Underfull \hbox (badness 10000) in paragraph at lines 25271--25276 []\T1/ptm/m/n/10 integer or [][]\T1/zi4/m/n/10 function[][][] \T1/ptm/m/n/10 gi v-ing the num-ber of knots to use when [1603] [1604] [1605] [1606] [1607] [1608] [1609] [1610] [1611] [1612] [1613] [1614] [1615] [1616] Underfull \vbox (badness 10000) has occurred while \output is active [1617] Underfull \hbox (badness 3514) in paragraph at lines 26327--26332 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1618] [1619] Underfull \hbox (badness 3514) in paragraph at lines 26423--26428 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1620] Underfull \hbox (badness 3514) in paragraph at lines 26509--26514 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1621] Overfull \hbox (2.23795pt too wide) in paragraph at lines 26561--26561 [] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] [1622] Underfull \hbox (badness 3514) in paragraph at lines 26597--26603 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1623] [1624] [1625] Underfull \hbox (badness 3514) in paragraph at lines 26811--26816 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1626] [1627] Underfull \hbox (badness 3514) in paragraph at lines 26898--26903 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1628] Underfull \hbox (badness 3514) in paragraph at lines 26963--26968 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1629] Underfull \hbox (badness 3514) in paragraph at lines 27057--27062 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1630] [1631] Underfull \hbox (badness 6691) in paragraph at lines 27149--27154 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p tm/m/n/10 . It is the value of the ex-pres-sion [1632] [1633] [1634] [1635] [1636] [1637] [1638] [1639] Underfull \hbox (badness 10000) in paragraph at lines 27679--27682 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex- Underfull \hbox (badness 10000) in paragraph at lines 27679--27682 \T1/ptm/m/n/10 trac-tion, which should be odd. If \T1/zi4/m/n/10 NULL\T1/ptm/m/ n/10 , the de-fault, [1640] [1641] [1642] [1643] [1644] [1645] [1646] [1647] [1648] Underfull \hbox (badness 5431) in paragraph at lines 28285--28287 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1649] [1650] [1651] [1652] Underfull \hbox (badness 5431) in paragraph at lines 28495--28498 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1653] [1654] [1655] [1656] [1657] Underfull \hbox (badness 1337) in paragraph at lines 28809--28813 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1658] Underfull \hbox (badness 10000) in paragraph at lines 28926--28929 []\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/ 10 ; cur-rently ex-cept for \T1/zi4/m/n/10 rt()\T1/ptm/m/n/10 , only for [1659] [1660] [1661] Underfull \hbox (badness 1616) in paragraph at lines 29109--29112 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1662] [1663] [1664] [1665] [1666] [1667] [1668] [1669] [1670] [1671] [1672] [1673] [1674] [1675] [1676] [1677] [1678] [1679] Underfull \hbox (badness 10000) in paragraph at lines 30239--30243 []\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect [1680] [1681] Underfull \vbox (badness 10000) has occurred while \output is active [1682] [1683] [1684] Underfull \hbox (badness 1337) in paragraph at lines 30603--30607 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1685] [1686] [1687] [1688] [1689] [1690] [1691] [1692] Underfull \hbox (badness 1337) in paragraph at lines 31130--31134 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1693] Underfull \hbox (badness 2142) in paragraph at lines 31207--31212 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 x \T1/ptm/m/n/10 (and \T1/zi4/m/n/10 y \T1 /ptm/m/n/10 if ap-pli-ca-ble) are valid, the func-tion now al-ways re-turns, al so in the Underfull \hbox (badness 5161) in paragraph at lines 31229--31231 []\T1/ptm/m/n/10 an es-ti-mate of the lo-ca-tion pa-ram-e-ter. (Only present if ar-gu-ment [1694] [1695] [1696] [1697] [1698] [1699] Underfull \hbox (badness 10000) in paragraph at lines 31612--31617 []\T1/ptm/m/n/10 There is a \T1/zi4/m/n/10 summary \T1/ptm/m/n/10 method for co n-tin-gency ta-ble ob-jects cre-ated by \T1/zi4/m/n/10 table \T1/ptm/m/n/10 or [1700] [1701]) (./stats4-pkg.tex [1702] Chapter 11. [1703] [1704] [1705] [1706] [1707] [1708]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup licate ignored \relax l.407 ...Package \pkg{stats4}}{show.Rdash.methods} [1709] [1710] [1711]) (./tcltk-pkg.tex [1712] Chapter 12. [1713] [1714] [1715] [1716] [1717] [1718] [1719] Underfull \vbox (badness 10000) has occurred while \output is active [1720] Underfull \hbox (badness 1546) in paragraph at lines 664--671 []\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing any Tk or Tcl com-mand by sim-ply run-ning [1721] [1722] [1723] [1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731] Underfull \hbox (badness 3019) in paragraph at lines 1407--1410 [][][]\T1/zi4/m/n/10 select.list[][][] \T1/ptm/m/n/10 (a text ver-sion ex-cept on Win-dows and the ma-cOS GUI), [][]\T1/zi4/m/n/10 menu[][][] \T1/ptm/m/n/10 ( whose [1732]) (./tools-pkg.tex Chapter 13. [1733] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1734] Underfull \hbox (badness 3039) in paragraph at lines 164--167 []\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1735] [1736] Underfull \hbox (badness 1308) in paragraph at lines 285--298 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 285--298 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 formatMastersthesis\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm /m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma tTechreport \T1/ptm/m/n/10 and [1737] Underfull \hbox (badness 3039) in paragraph at lines 389--391 []\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine to use. Over-rides any [1738] [1739] [1740] [1741] [1742] [1743] [1744] Overfull \vbox (7.18602pt too high) has occurred while \output is active [1745] [1746] [1747] [1748] Underfull \hbox (badness 1635) in paragraph at lines 1056--1058 []\T1/ptm/m/n/10 Delete files in the tem-po-rary di-rec-tory? This op-tion is i g-nored when [1749] Underfull \hbox (badness 4441) in paragraph at lines 1134--1144 \T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe n-den-cies (de- [1750] Underfull \hbox (badness 1014) in paragraph at lines 1156--1158 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1162--1164 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous Underfull \hbox (badness 10000) in paragraph at lines 1199--1202 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1199--1202 \T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 , [1751] [1752] [1753] Underfull \hbox (badness 10000) in paragraph at lines 1377--1379 []\T1/ptm/m/n/10 Re-save PDF files (es-pe-cially vi-gnettes) more com-pactly. S up-port func-tion for [1754] [1755] Underfull \hbox (badness 2293) in paragraph at lines 1551--1553 []\T1/zi4/m/n/10 CRAN_memtest_notes() \T1/ptm/m/n/10 is now dep-re-cated, with its func-tion-al-ity in-te-grated into that of [1756] [1757] Underfull \hbox (badness 7981) in paragraph at lines 1689--1694 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1758] Underfull \hbox (badness 1082) in paragraph at lines 1696--1698 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see [1759] [1760] [1761]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ignored \relax l.1893 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [1762] [1763] [1764] [1765] Overfull \hbox (17.27782pt too wide) in paragraph at lines 2195--2195 []\T1/zi4/m/n/9 writeLines(paste0("\\newcommand{\\logo}{\\if{html}{\\figure{Rl ogo.svg}{options: width=100}",[] [1766] [1767] [1768] Underfull \hbox (badness 7981) in paragraph at lines 2364--2370 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1769] [1770] [1771] [1772] [1773] [1774] [1775] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/n' instead on input line 2829. [1776] [1777] [1778] [1779] Underfull \hbox (badness 1424) in paragraph at lines 3111--3113 []\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t or of links, as re-turned by [1780] [1781] [1782] [1783] [1784] [1785] [1786] [1787] [1788] [1789] Underfull \hbox (badness 10000) in paragraph at lines 3811--3813 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [1790] [1791] Underfull \hbox (badness 10000) in paragraph at lines 3950--3953 []\T1/ptm/m/n/10 Where sup-ported (\T1/zi4/m/sl/10 texi2dvi \T1/ptm/m/n/10 5.0 and later; \T1/zi4/m/sl/10 texify.exe \T1/ptm/m/n/10 from MiK-TeX), op-tion [1792] Underfull \hbox (badness 1137) in paragraph at lines 4048--4050 []\T1/ptm/m/n/10 a ma-trix spec-i-fy-ing all pack-ages in-stalled on the lo-cal sys-tem, as from [1793] [1794] [1795] [1796] Underfull \hbox (badness 1838) in paragraph at lines 4257--4263 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4257--4263 \T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [1797] Underfull \hbox (badness 5726) in paragraph at lines 4337--4342 []\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/sl/10 TR UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/sl/10 DependsList \T1/ptm/m/n/10 ob-ject Underfull \hbox (badness 7221) in paragraph at lines 4337--4342 \T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo r in-stance if there was [1798] [1799] Underfull \hbox (badness 2197) in paragraph at lines 4486--4496 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][]\T1/zi4 /m/sl/10 available.packages[][][]\T1/ptm/m/n/10 : Underfull \hbox (badness 2229) in paragraph at lines 4486--4496 \T1/ptm/m/n/10 fields will al-ways be in-cluded, plus the file name in field \T 1/zi4/m/sl/10 "File" \T1/ptm/m/n/10 if [1800] Underfull \hbox (badness 1571) in paragraph at lines 4549--4553 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [1801] [1802] [1803]) (./utils-pkg.tex [1804] Chapter 14. Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ', [1805] [1806] [1807] [1808] [1809] [1810] [1811] [1812] [1813] Underfull \hbox (badness 10000) in paragraph at lines 620--626 []\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1 0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 620--626 \T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the [1814] [1815] Underfull \hbox (badness 5847) in paragraph at lines 753--759 []\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to se-lect which of the pack-ages on the repos-i-to- Underfull \hbox (badness 4229) in paragraph at lines 753--759 \T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi 4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as Underfull \hbox (badness 3861) in paragraph at lines 821--826 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/ 10 "License_is_FOSS"\T1/ptm/m/n/10 , [1816] [1817] [1818] Underfull \hbox (badness 1430) in paragraph at lines 992--999 \T1/ptm/m/n/10 in-di-cat-ing that the bib-tex code should be given in ad-di-tio n to the for- Underfull \hbox (badness 1931) in paragraph at lines 992--999 \T1/ptm/m/n/10 mat-ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not mo re than $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is Underfull \hbox (badness 1038) in paragraph at lines 992--999 \T1/ptm/m/n/10 taken as [][]\T1/zi4/m/sl/10 getOption[][][]("citation.bibtex.ma x", 1) \T1/ptm/m/n/10 which is \T1/zi4/m/sl/10 1 \T1/ptm/m/n/10 typ-i-cally. Underfull \hbox (badness 1817) in paragraph at lines 992--999 \T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f ault by Underfull \hbox (badness 10000) in paragraph at lines 1003--1005 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [1819] [1820] [1821] [1822] [1823] [1824] [1825] Underfull \hbox (badness 1371) in paragraph at lines 1482--1484 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [1826] [1827] [1828] [1829] [1830] [1831] [1832] Underfull \hbox (badness 2057) in paragraph at lines 1959--1961 []\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th is func-tion is in-voked for its side ef-fect of up-dat-ing [1833] [1834] Underfull \hbox (badness 10000) in paragraph at lines 2054--2056 []\T1/ptm/m/n/10 One can in-clude an auto-generated pack-age ci-ta-tion in the `\T1/zi4/m/sl/10 CITATION\T1/ptm/m/n/10 ' file via [1835] Underfull \hbox (badness 5189) in paragraph at lines 2156--2158 []\T1/ptm/m/n/10 A list of keys that have been pre-vi-ously cited, to be used w hen [1836] [1837] [1838] Underfull \hbox (badness 1661) in paragraph at lines 2374--2381 []\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sim-pli-fied to an [][]\T1/zi4/m/sl/10 array[][][] \T1/ptm/m/n/10 (typ-i- [1839] Underfull \hbox (badness 1748) in paragraph at lines 2390--2393 []\T1/ptm/m/n/10 A [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4 /m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m /n/10 ar-gu-ment above. In the lat-ter case, the iden-tity [1840] [1841] [1842] [1843] [1844] [1845] Underfull \hbox (badness 10000) in paragraph at lines 2800--2804 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/sl/10 .tab\T1/ptm/m/n/10 ', `\T1/zi4/ m/sl/10 .txt\T1/ptm/m/n/10 ' or `\T1/zi4/m/sl/10 .TXT\T1/ptm/m/n/10 ' are read us-ing Overfull \hbox (59.4187pt too wide) in paragraph at lines 2805--2808 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/sl/10 .csv\T1/ptm/m/n/10 ' or `\T1/zi 4/m/sl/10 .CSV\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/sl/10 read.table[] [][](..., header = TRUE, sep = ";", as.is=FALSE)\T1/ptm/m/n/10 , [1846] [1847] [1848] [1849] [1850] [1851] [1852] [1853] [1854] Underfull \hbox (badness 1430) in paragraph at lines 3484--3492 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the Underfull \hbox (badness 1231) in paragraph at lines 3533--3539 []\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers via en-vi-ron-ment vari-able [1855] [1856] Underfull \hbox (badness 10000) in paragraph at lines 3686--3688 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][]\T1/zi4/m/sl/10 dow nload.file[][][] \T1/ptm/m/n/10 and [1857] [1858] [1859] [1860] [1861] [1862] [1863] [1864] [1865] [1866] [1867]pdf TeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.4373 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.format.1}) has been already used, dupl icate ignored \relax l.4373 ...mat Unordered and Ordered Lists}{format} [1868] [1869] [1870] [1871] [1872] [1873] [1874] [1875] [1876] [1877] [1878] [1879] [1880] [1881] [1882] Underfull \hbox (badness 1371) in paragraph at lines 5370--5372 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [1883] Underfull \hbox (badness 1502) in paragraph at lines 5459--5464 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 5459--5464 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [1884] [1885] [1886] Underfull \hbox (badness 10000) in paragraph at lines 5632--5641 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, [1887] Underfull \hbox (badness 2150) in paragraph at lines 5695--5698 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [1888] [1889] Underfull \hbox (badness 3118) in paragraph at lines 5832--5834 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for Underfull \hbox (badness 2409) in paragraph at lines 5865--5869 []\T1/ptm/m/n/10 To in-stall a source pack-age with com-piled code only for the sub-architecture used by [1890] Underfull \hbox (badness 1325) in paragraph at lines 5973--5977 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/sl/10 available.packag es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able [1891] Underfull \hbox (badness 10000) in paragraph at lines 6056--6059 []\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to be passed Underfull \hbox (badness 10000) in paragraph at lines 6056--6059 \T1/ptm/m/n/10 to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a source pac k-age in-stall. E.g., [1892] Underfull \hbox (badness 3219) in paragraph at lines 6129--6136 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/sl/ 10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 6129--6136 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 6129--6136 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by [1893] Underfull \hbox (badness 10000) in paragraph at lines 6229--6234 [][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/ 10 , [1894] [1895] [1896] [1897] [1898] [1899] [1900] [1901] [1902] [1903] [1904] [1905] [1906] [1907] [1908] [1909] [1910] [1911] [1912] Underfull \vbox (badness 3029) has occurred while \output is active [1913] [1914] [1915] [1916] Underfull \hbox (badness 10000) in paragraph at lines 7662--7664 []\T1/ptm/m/n/10 for \T1/zi4/m/sl/10 asDateBuilt()\T1/ptm/m/n/10 , a [][]\T1/zi 4/m/sl/10 character[][][] \T1/ptm/m/n/10 string as from Underfull \hbox (badness 10000) in paragraph at lines 7676--7678 []\T1/zi4/m/sl/10 packageVersion() \T1/ptm/m/n/10 is a con-ve-nience short-cut, al-low-ing things like Underfull \hbox (badness 2310) in paragraph at lines 7684--7689 []\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [1917] [1918] [1919] [1920] [1921] [1922] [1923] [1924] Underfull \hbox (badness 1789) in paragraph at lines 8278--8280 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [1925] [1926] [1927] [1928] [1929] [1930] [1931] [1932] [1933] Underfull \vbox (badness 5533) has occurred while \output is active [1934] [1935] [1936] Underfull \hbox (badness 1097) in paragraph at lines 9111--9114 []\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b e used on Win-dows, in which case [1937] [1938] Underfull \hbox (badness 3000) in paragraph at lines 9247--9252 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t able[][][]\T1/ptm/m/n/10 ; [1939] [1940] [1941] [1942] [1943] [1944] [1945] [1946] Underfull \hbox (badness 2134) in paragraph at lines 9830--9835 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write. table[][][]\T1/ptm/m/n/10 ; [1947] [1948] [1949] [1950] [1951] [1952] Underfull \hbox (badness 5077) in paragraph at lines 10255--10259 []\T1/zi4/m/sl/10 as.roman \T1/ptm/m/n/10 cre-ates ob-jects of class \T1/zi4/m/ sl/10 "roman" \T1/ptm/m/n/10 which are in-ter-nally rep-re-sented as in-te- Underfull \hbox (badness 2269) in paragraph at lines 10255--10259 \T1/ptm/m/n/10 gers, and have suit-able meth-ods for print-ing, for-mat-ting, s ub-set-ting, co-er-cion, etc, see Underfull \hbox (badness 2469) in paragraph at lines 10267--10271 []\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia , The Free En-cy-clo-pe-dia. Underfull \hbox (badness 3428) in paragraph at lines 10267--10271 [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / w / index . php ? title = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac- [1953] [1954] [1955] [1956] Underfull \hbox (badness 4060) in paragraph at lines 10544--10547 []\T1/ptm/m/n/10 If `\T1/zi4/m/sl/10 --default-packages\T1/ptm/m/n/10 ' is not used, then \T1/zi4/m/sl/10 Rscript \T1/ptm/m/n/10 checks the en-vi-ron-ment var i-able [1957] Overfull \hbox (18.77168pt too wide) in paragraph at lines 10567--10567 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] [1958] Underfull \hbox (badness 10000) in paragraph at lines 10630--10632 []\T1/ptm/m/n/10 For \T1/zi4/m/sl/10 type = "txt"\T1/ptm/m/n/10 , [][]\T1/zi4/m /sl/10 file.show[][][] \T1/ptm/m/n/10 is used. [][]\T1/zi4/m/sl/10 vignette[][] []\T1/ptm/m/n/10 s are nicely viewed via [1959] [1960] Underfull \hbox (badness 2150) in paragraph at lines 10806--10808 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac s / manual / [1961] [1962] [1963] [1964] Underfull \hbox (badness 10000) in paragraph at lines 11025--11029 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n ow taken from the en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 11056--11062 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a [1965] Underfull \hbox (badness 2096) in paragraph at lines 11174--11177 []\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing whether PNG fig-ures should be gen-er-ated. Ig-nored if Underfull \hbox (badness 1527) in paragraph at lines 11178--11181 []\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing whether JPEG fig-ures should be gen-er-ated. Ig-nored if [1966] Underfull \hbox (badness 1009) in paragraph at lines 11250--11261 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If [1967] [1968] [1969] [1970] [1971] Underfull \hbox (badness 3780) in paragraph at lines 11556--11560 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1 /zi4/m/sl/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via Underfull \hbox (badness 2635) in paragraph at lines 11572--11575 []\T1/ptm/m/n/10 Repository `\T1/zi4/m/sl/10 CRAN\T1/ptm/m/n/10 ' is treated sp e-cially: the value is taken from the cur-rent set-ting of [1972] [1973] [1974] [1975] [1976] [1977] Underfull \hbox (badness 2818) in paragraph at lines 11941--11946 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 (de-fault), [] []\T1/zi4/m/sl/10 deparse[][][](control = ) \T1/ptm/m/n/10 will not have Underfull \hbox (badness 5970) in paragraph at lines 11950--11953 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive [1978] [1979] [1980] [1981] Underfull \hbox (badness 10000) in paragraph at lines 12213--12215 []\T1/ptm/m/n/10 Options other than \T1/zi4/m/sl/10 memory = "none" \T1/ptm/m/n /10 ap-ply only to files pro-duced by [1982] [1983] Underfull \hbox (badness 1057) in paragraph at lines 12370--12377 []\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 syntax = NULL \T1/ptm/m/n/10 (the de-fault) then the avail-able syn-tax ob-jects are con-sulted in turn, [1984] [1985] [1986] [1987] Underfull \hbox (badness 6510) in paragraph at lines 12642--12646 []\T1/ptm/m/n/10 When ar-gu-ment \T1/zi4/m/sl/10 tar \T1/ptm/m/n/10 is set to t he com-mand \T1/zi4/m/sl/10 tar \T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment vari-a ble Underfull \hbox (badness 10000) in paragraph at lines 12649--12652 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 12649--12652 \T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [1988] [1989] [1990] [1991] [1992] [1993] [1994] [1995] [1996] Underfull \hbox (badness 10000) in paragraph at lines 13238--13243 []\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/sl/10 destdir \T1/ptm/m/n/10 and \ T1/zi4/m/sl/10 dependencies \T1/ptm/m/n/10 to be passed to Underfull \hbox (badness 3861) in paragraph at lines 13238--13243 [][]\T1/zi4/m/sl/10 install.packages[][][] \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 i gnore_repo_cache\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 max_repo_cache_age \T1/ptm/m/n /10 and Underfull \hbox (badness 1052) in paragraph at lines 13244--13246 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See Underfull \hbox (badness 10000) in paragraph at lines 13274--13279 []\T1/ptm/m/n/10 For how the list of suit-able avail-able pack-ages is de-ter-m ined see Underfull \hbox (badness 10000) in paragraph at lines 13274--13279 [][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 . \T1/zi4/m/sl/10 av ailable = NULL \T1/ptm/m/n/10 make a call to Underfull \hbox (badness 1297) in paragraph at lines 13274--13279 \T1/zi4/m/sl/10 available.packages(contriburl = contriburl, method = method) \T 1/ptm/m/n/10 and hence by [1997] Underfull \hbox (badness 10000) in paragraph at lines 13303--13306 [][][]\T1/zi4/m/sl/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.package s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n /10 , [1998] [1999] [2000] Overfull \hbox (23.85939pt too wide) in paragraph at lines 13545--13548 [][][]\T1/zi4/m/sl/10 browseVignettes[][][] \T1/ptm/m/n/10 for an HTML-based vi -gnette browser; [][]\T1/zi4/m/sl/10 RShowDoc[][][](, package = "") [2001] [2002] [2003] Underfull \hbox (badness 1454) in paragraph at lines 13696--13700 []\T1/ptm/m/n/10 the char-ac-ter(s) to print at the end of each line (row). For ex-am-ple, [2004] Underfull \hbox (badness 10000) in paragraph at lines 13766--13768 []\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec- tion [2005] [2006] [2007]) [2008] [2009] [2010] (./KernSmooth-pkg.tex Chapter 15. [2011] [2012] [2013] [2014] [2015] [2016] [2017] [2018] [2019] [2020]) (./MASS-pkg.tex Chapter 16. [2021] [2022] [2023] [2024] [2025] [2026] [2027] [2028] [2029] [2030] [2031] [2032] [2033] [2034] [2035] [2036] [2037] [2038] [2039] [2040] [2041] [2042] Underfull \hbox (badness 7256) in paragraph at lines 1603--1605 []\T1/ptm/m/n/10 logical. If true and the re-sult would be sparse (only true fo r [2043] [2044] [2045] [2046] [2047] [2048] [2049] [2050] [2051] [2052] [2053] [2054] [2055] [2056] [2057] Underfull \hbox (badness 7944) in paragraph at lines 2693--2696 []\T1/ptm/m/n/10 further ar-gu-ments for \T1/zi4/m/sl/10 plot \T1/ptm/m/n/10 an d graph-i-cal pa-ram-e-ters. Note that [2058] [2059] [2060] Underfull \hbox (badness 10000) in paragraph at lines 2863--2868 []\T1/ptm/m/n/10 Distributions \T1/zi4/m/sl/10 "beta"\T1/ptm/m/n/10 , \T1/zi4/m /sl/10 "cauchy"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "chi-squared"\T1/ptm/m/n/10 , \ T1/zi4/m/sl/10 "exponential"\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 2863--2868 \T1/zi4/m/sl/10 "gamma"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "geometric"\T1/ptm/m/n/ 10 , \T1/zi4/m/sl/10 "log-normal"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "lognormal"\T 1/ptm/m/n/10 , \T1/zi4/m/sl/10 "logistic"\T1/ptm/m/n/10 , Underfull \hbox (badness 1184) in paragraph at lines 2863--2868 \T1/zi4/m/sl/10 "negative binomial"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "normal"\T1 /ptm/m/n/10 , \T1/zi4/m/sl/10 "Poisson"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "t" \T1 /ptm/m/n/10 and \T1/zi4/m/sl/10 "weibull" \T1/ptm/m/n/10 are [2061] [2062] Underfull \hbox (badness 4686) in paragraph at lines 3031--3033 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds Underfull \hbox (badness 2591) in paragraph at lines 3045--3049 []\T1/ptm/m/n/10 where \T1/zi4/m/sl/10 p1\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 p2\T1 /ptm/m/n/10 , ...are pos-i-tive in-te-gers, ter-mi-nat-ing ei-ther at \T1/zi4/m /sl/10 cycles \T1/ptm/m/n/10 terms or when a [2063] [2064] [2065] Underfull \hbox (badness 10000) in paragraph at lines 3233--3235 []\T1/ptm/m/n/10 Fitted model ob-ject from a \T1/zi4/m/sl/10 Gamma \T1/ptm/m/n/ 10 fam-ily or \T1/zi4/m/sl/10 quasi \T1/ptm/m/n/10 fam-ily with [2066] [2067] [2068] [2069] [2070] [2071] [2072] [2073] [2074] [2075] [2076] [2077] [2078] [2079] [2080] [2081] [2082] [2083] [2084] [2085] [2086] [2087] Underfull \hbox (badness 10000) in paragraph at lines 4810--4813 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm [2088] Underfull \hbox (badness 10000) in paragraph at lines 4888--4891 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm [2089] [2090] [2091] [2092] [2093] [2094] Underfull \hbox (badness 1975) in paragraph at lines 5341--5343 []\T1/ptm/m/n/10 the value of the cri-te-rion for the best so-lu-tion found, in the case of [2095] [2096] [2097] [2098] [2099] [2100] [2101] [2102] [2103] [2104] [2105]pdf TeX warning (ext4): destination with the same identifier (name{Rfn.npk}) has be en already used, duplicate ignored \relax l.6130 ...sical N, P, K Factorial Experiment}{npk} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.npk.1}) has been already used, duplica te ignored \relax l.6130 ...sical N, P, K Factorial Experiment}{npk} [2106] Underfull \hbox (badness 1931) in paragraph at lines 6248--6252 []\T1/ptm/m/n/10 Given a ma-trix, \T1/zi4/m/sl/10 M\T1/ptm/m/n/10 , find a ma-t rix \T1/zi4/m/sl/10 N \T1/ptm/m/n/10 giv-ing a ba-sis for the (left) null space . That is [2107] [2108] [2109] [2110] Underfull \vbox (badness 10000) has occurred while \output is active [2111] [2112] [2113] [2114] [2115] [2116] [2117] [2118] Underfull \hbox (badness 10000) in paragraph at lines 7097--7104 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm [2119] Underfull \hbox (badness 3138) in paragraph at lines 7168--7174 []\T1/ptm/m/n/10 The log-log and com-ple-men-tary log-log links are the in-crea s-ing func-tions $\OML/cmm/m/it/10 F[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 p\OT1/c mr/m/n/10 ) = [2120] [2121] [2122] Underfull \hbox (badness 6775) in paragraph at lines 7347--7350 \T1/ptm/m/n/10 only the first \T1/zi4/m/sl/10 dimen \T1/ptm/m/n/10 dis-crim-i-n ant com-po-nents are used (ex-cept for [2123] [2124] [2125] [2126] [2127] [2128] [2129] [2130] [2131] Underfull \hbox (badness 4686) in paragraph at lines 7980--7982 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds Underfull \hbox (badness 2591) in paragraph at lines 7996--8000 []\T1/ptm/m/n/10 where \T1/zi4/m/sl/10 p1\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 p2\T1 /ptm/m/n/10 , ...are pos-i-tive in-te-gers, ter-mi-nat-ing ei-ther at \T1/zi4/m /sl/10 cycles \T1/ptm/m/n/10 terms or when a [2132] [2133] [2134] [2135] [2136] [2137] [2138] [2139] [2140] [2141] [2142] [2143] [2144] [2145] [2146] [2147] [2148] [2149] [2150] Underfull \hbox (badness 1259) in paragraph at lines 9380--9382 []\T1/ptm/m/n/10 if \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 re-turn ob-served and e x-pected fre-quen-cies in the re-sult. Us-ing [2151] [2152] [2153] [2154] [2155] [2156] [2157] [2158] [2159] [2160] [2161] [2162] [2163] [2164] [2165] [2166] [2167] [2168]) (./Matrix-pkg.tex Chapter 17. Underfull \hbox (badness 10000) in paragraph at lines 41--44 []\T1/ptm/m/n/10 Note that the cur-rent im-ple-men-ta-tion de-tails are sub-jec t to change, and if you Underfull \hbox (badness 10000) in paragraph at lines 41--44 \T1/ptm/m/n/10 con-sider work-ing with these classes, please con-tact the pack- age main-tain-ers [2169] Underfull \hbox (badness 1769) in paragraph at lines 95--98 []\T1/ptm/m/n/10 This is cur-rently ex-per-i-men-tal and not yet used for our o wn code. Please con-tact us [2170] [2171] [2172] [2173] Underfull \hbox (badness 5119) in paragraph at lines 508--512 []\T1/ptm/m/n/10 logical; if true the re-sult will be sym-met-ric (in-her-it-in g from class [2174] [2175] Underfull \hbox (badness 2418) in paragraph at lines 597--600 []\T1/ptm/m/n/10 The value of \T1/zi4/m/sl/10 bdiag() \T1/ptm/m/n/10 in-heris f rom class [][]\T1/zi4/m/sl/10 CsparseMatrix[][][]\T1/ptm/m/n/10 , whereas \T1/z i4/m/sl/10 .bdiag() \T1/ptm/m/n/10 re-turns a [2176] [2177] [2178] [2179] [2180] Underfull \hbox (badness 2564) in paragraph at lines 1022--1024 []\T1/zi4/m/sl/10 signature(from = "CHMfactor", to = "sparseMatrix") \T1/ptm/m/ n/10 (or equiv-a-lently, [2181] [2182]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.chol}) has been already used, duplicate ignored \relax l.1134 ...- 'Matrix' S4 Generic and Methods}{chol} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.chol.1}) has been already used, duplic ate ignored \relax l.1134 ...- 'Matrix' S4 Generic and Methods}{chol} [2183pdfTeX warning (ext4): destination with the same identifier (name{Rfn.chol,dsCMatrix.Rdash.method}) ha s been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.1209 \item[chol] \code{signature(x = "dgeMatrix")}: works viapdfTeX warning ( ext4): destination with the same identifier (name{Rfn.chol,lsCMatrix.Rdash.meth od}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.1209 \item[chol] \code{signature(x = "dgeMatrix")}: works viapdfTeX warning ( ext4): destination with the same identifier (name{Rfn.chol,nsCMatrix.Rdash.meth od}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.1209 \item[chol] \code{signature(x = "dgeMatrix")}: works via] [2184] [2185] Underfull \hbox (badness 2277) in paragraph at lines 1388--1391 []\T1/ptm/m/n/10 This is a generic func-tion with spe-cial meth-ods for dif-fer -ent types of ma-tri-ces. Use Underfull \hbox (badness 5741) in paragraph at lines 1435--1439 []\T1/ptm/m/n/10 Class def-i-ni-tions [][]\T1/zi4/m/sl/10 CHMfactor[][][] \T1/p tm/m/n/10 and [][]\T1/zi4/m/sl/10 dsCMatrix[][][] \T1/ptm/m/n/10 and func-tion [][]\T1/zi4/m/sl/10 expand[][][]\T1/ptm/m/n/10 . Note the ex-tra [2186] [2187] Underfull \hbox (badness 3930) in paragraph at lines 1531--1538 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/sl/10 n ew("Cholesky", ...) \T1/ptm/m/n/10 or Underfull \hbox (badness 1097) in paragraph at lines 1560--1563 []\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "MatrixFactorization" \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 "dtrMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi4/m/sl/10 " dgeMatrix"\T1/ptm/m/n/10 , by class Underfull \hbox (badness 1783) in paragraph at lines 1566--1570 []\T1/ptm/m/n/10 Both these fac-tor-iza-tions can \T1/ptm/m/it/10 di-rectly \T1 /ptm/m/n/10 be treated as (tri-an-gu-lar) ma-tri-ces, as they ex-tend [2188]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.col Sums}) has been already used, duplicate ignored \relax l.1623 ... Row and Column Sums and Means}{colSums} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.colSums.1}) has been already used, dup licate ignored \relax l.1623 ... Row and Column Sums and Means}{colSums} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.colMeans}) has been already used, dupl icate ignored \relax l.1624 \aliasA{colMeans}{colSums}{colMeans} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.rowMeans}) has been already used, duplicate i gnored \relax l.1645 \aliasA{rowMeans}{colSums}{rowMeans} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.rowSums}) has been already used, duplicate ig nored \relax l.1656 \aliasA{rowSums}{colSums}{rowSums} [2189] [2190] [2191] Underfull \hbox (badness 3547) in paragraph at lines 1875--1878 []\T1/ptm/m/n/10 a num-ber $\OML/cmm/m/it/10 > \OT1/cmr/m/n/10 0$\T1/ptm/m/n/10 , the es-ti-mated (1-norm) con-di-tion num-ber $[]$; when [2192] [2193] [2194] [2195] [2196] [2197] [2198] [2199] [2200] Underfull \hbox (badness 2368) in paragraph at lines 2610--2614 []\T1/ptm/m/n/10 However this means that a ma-trix typ-i-cally can tbe stored i n more than one pos-si-ble [2201] [2202] Underfull \hbox (badness 6842) in paragraph at lines 2700--2703 []\T1/zi4/m/sl/10 Diagonal() \T1/ptm/m/n/10 re-turns an ob-ject of class [][]\T 1/zi4/m/sl/10 ddiMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/sl/10 ldiMatrix[] [][] \T1/ptm/m/n/10 (with ``su-per-class'' [2203] Underfull \hbox (badness 10000) in paragraph at lines 2983--2985 []\T1/zi4/m/sl/10 signature(x = "nMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equi v-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion Underfull \hbox (badness 7814) in paragraph at lines 2986--2990 []\T1/zi4/m/sl/10 signature(x = "diagonalMatrix")\T1/ptm/m/n/10 : all these gro up meth-ods re-turn a [2204] [2205] [2206] Underfull \hbox (badness 10000) in paragraph at lines 3243--3245 [][][]\T1/zi4/m/sl/10 drop0[][][](x, tol=1e-10) \T1/ptm/m/n/10 is some-times pr efer-able to (and more ef-fi-cient than) [2207] [2208] [2209] Underfull \hbox (badness 3343) in paragraph at lines 3528--3532 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/sl/10 n ew("dsCMatrix", ...) \T1/ptm/m/n/10 or [2210] [2211] [2212] [2213] Underfull \hbox (badness 3343) in paragraph at lines 3813--3815 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/sl/10 n ew("dsyMatrix", ...) \T1/ptm/m/n/10 or [2214] [2215] Underfull \hbox (badness 2318) in paragraph at lines 3969--3973 []\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "dgCMatrix"\T1/ptm/m/n/10 , di-rectly. C lass \T1/zi4/m/sl/10 "triangularMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi 4/m/sl/10 "dMatrix"\T1/ptm/m/n/10 , [2216] [2217] [2218] [2219] [2220] Underfull \hbox (badness 10000) in paragraph at lines 4393--4398 []\T1/ptm/m/n/10 The ex-po-nen-tial of a ma-trix is de-fined as the in-fi-nite Tay-lor se-ries [2221] [2222] [2223] Overfull \hbox (3.77782pt too wide) in paragraph at lines 4527--4527 [] \T1/zi4/m/n/9 readHB(gzcon(url("http://www.cise.ufl.edu/research/sparse/RB/ Boeing/msc00726.tar.gz"))))[] Overfull \hbox (48.77782pt too wide) in paragraph at lines 4530--4530 [] \T1/zi4/m/n/9 readMM(gzcon(url("ftp://math.nist.gov/pub/MatrixMarket2/Harwe ll-Boeing/counterx/jgl009.mtx.gz"))))[] [2224] [2225] Underfull \hbox (badness 1931) in paragraph at lines 4759--4761 []\T1/ptm/m/n/10 a string spec-i-fy-ing how the \T1/zi4/m/sl/10 zero.print \T1/ ptm/m/n/10 codes should be aligned, see [2226] [2227] [2228] [2229] [2230] Underfull \hbox (badness 5862) in paragraph at lines 5079--5082 []\T1/ptm/m/n/10 All meth-ods cur-rently end up call-ing the method for the [][ ]\T1/zi4/m/sl/10 dgTMatrix[][][] \T1/ptm/m/n/10 class. Use [2231] [2232] Underfull \hbox (badness 3229) in paragraph at lines 5220--5229 []\T1/ptm/m/n/10 While ``row-indexing'' (of more than one row \T1/ptm/m/it/10 o r \T1/ptm/m/n/10 us-ing \T1/zi4/m/sl/10 drop=FALSE\T1/ptm/m/n/10 ) stays within the Underfull \hbox (badness 3942) in paragraph at lines 5262--5264 []\T1/zi4/m/sl/10 signature(x = "matrix", y = "indMatrix") \T1/ptm/m/n/10 and o ther sig-na-tures (use [2233] [2234] Underfull \hbox (badness 2846) in paragraph at lines 5376--5378 []\T1/ptm/m/n/10 logical in-di-cat-ing if \T1/zi4/m/sl/10 p \T1/ptm/m/n/10 con- tains val-ues \T1/zi4/m/sl/10 0:(n-1) \T1/ptm/m/n/10 or rather (by de-fault, [2235] [2236] [2237] Underfull \hbox (badness 1014) in paragraph at lines 5654--5657 []\T1/zi4/m/sl/10 isTriangular(M) \T1/ptm/m/n/10 re-turns a [][]\T1/zi4/m/sl/10 logical[][][] \T1/ptm/m/n/10 in-di-cat-ing if \T1/zi4/m/sl/10 M \T1/ptm/m/n/10 is a tri-an-gu-lar ma-trix. Anal-o-gously, [2238] [2239] [2240] [2241] [2242] Underfull \hbox (badness 6944) in paragraph at lines 5969--5972 []\T1/zi4/m/sl/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2243] Underfull \hbox (badness 2478) in paragraph at lines 6081--6086 []\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "ldenseMatrix"\T1/ptm/m/n/10 , di-rectly . Class \T1/zi4/m/sl/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/sl/10 "lde nseMatrix"\T1/ptm/m/n/10 . Class [2244] Underfull \hbox (badness 10000) in paragraph at lines 6089--6092 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ); use, e.g., [2245] Underfull \hbox (badness 5161) in paragraph at lines 6281--6284 []\T1/zi4/m/sl/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2246] Underfull \hbox (badness 10000) in paragraph at lines 6379--6382 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2247] Underfull \hbox (badness 10000) in paragraph at lines 6454--6457 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2248] Underfull \hbox (badness 2050) in paragraph at lines 6530--6533 []\T1/zi4/m/sl/10 lu() \T1/ptm/m/n/10 is a generic func-tion with spe-cial meth -ods for dif-fer-ent types of ma-tri-ces. Use [2249] [2250] [2251] Underfull \hbox (badness 6268) in paragraph at lines 6736--6739 []\T1/ptm/m/n/10 Note that when the re-sult-ing ma-trix is di-ag-o-nal (``math- e-mat-i-cally''), [2252] Underfull \hbox (badness 6268) in paragraph at lines 6760--6764 []\T1/ptm/m/n/10 Most of the time, the func-tion works via a tra-di-tional (\T1 /ptm/m/it/10 full\T1/ptm/m/n/10 ) [][]\T1/zi4/m/sl/10 matrix[][][]\T1/ptm/m/n/1 0 . How-ever, [2253]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.det }) has been already used, duplicate ignored \relax l.6853 \aliasA{det}{Matrix-class}{det} Underfull \hbox (badness 1412) in paragraph at lines 6951--6954 []\T1/zi4/m/sl/10 signature(object = "Matrix")\T1/ptm/m/n/10 : draws an [][]\T1 /zi4/m/sl/10 image[][][] \T1/ptm/m/n/10 of the ma-trix en-tries, us-ing Underfull \hbox (badness 10000) in paragraph at lines 6956--6959 [2254]pdfTeX warning (ext4): destination with the same identifier (name{Rfn..Rp cent.*.Rpcent.}) has been already used, duplicate ignored \relax l.7029 ...*\%}{matrix-products}{.Rpcent.*.Rpcent.} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.crossprod}) has been already used, dup licate ignored \relax l.7137 ...A{crossprod}{matrix-products}{crossprod} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.tcrossprod}) has been already used, du plicate ignored \relax l.7237 ...tcrossprod}{matrix-products}{tcrossprod} [2255pdfTeX warning (ext4): destination with the same identifier (name{Rfn.crossprod.Rdash.methods}) has be en already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.7341 pdfTeX warning (ext4): destination with the same identifier (name{Rfn.tc rossprod.Rdash.methods}) has been already used, duplicate ignored \AtBegShi@Output ...ipout \box \AtBeginShipoutBox \fi \fi l.7341 ] [2256] Underfull \hbox (badness 3942) in paragraph at lines 7411--7416 []\T1/zi4/m/sl/10 signature(x = "dtrMatrix", y = "matrix") \T1/ptm/m/n/10 and o ther sig-na-tures (use [2257] [2258] Underfull \hbox (badness 1237) in paragraph at lines 7562--7564 []\T1/zi4/m/sl/10 signature(a = "MatrixFactorization", b= .)\T1/ptm/m/n/10 : so lve $\OML/cmm/m/it/10 Ax \OT1/cmr/m/n/10 = \OML/cmm/m/it/10 b$ \T1/ptm/m/n/10 f or $\OML/cmm/m/it/10 x$\T1/ptm/m/n/10 ; see Underfull \hbox (badness 1430) in paragraph at lines 7570--7575 []\T1/ptm/m/n/10 classes in-her-it-ing from \T1/zi4/m/sl/10 "MatrixFactorizatio n"\T1/ptm/m/n/10 , such as [][]\T1/zi4/m/sl/10 LU[][][]\T1/ptm/m/n/10 , [][]\T1 /zi4/m/sl/10 Cholesky[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 CHMfactor[][][] \T1/ptm/m/n/10 , and [2259] Underfull \hbox (badness 6944) in paragraph at lines 7641--7644 []\T1/zi4/m/sl/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2260] Underfull \hbox (badness 3118) in paragraph at lines 7693--7695 []\T1/ptm/m/n/10 logical in-di-cat-ing if \T1/zi4/m/sl/10 X <- (X + t(X))/2 \T1 /ptm/m/n/10 should be done, af-ter [2261] [2262] Underfull \vbox (badness 10000) has occurred while \output is active [2263] Underfull \hbox (badness 2478) in paragraph at lines 7896--7901 []\T1/ptm/m/n/10 Class \T1/zi4/m/sl/10 "ndenseMatrix"\T1/ptm/m/n/10 , di-rectly . Class \T1/zi4/m/sl/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/sl/10 "nde nseMatrix"\T1/ptm/m/n/10 . Class Underfull \hbox (badness 10000) in paragraph at lines 7904--7907 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ); use, e.g., [2264] [2265] [2266]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.norm}) has been already used, duplicate ignored \relax l.8138 \HeaderA{norm}{Matrix Norms}{norm} pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.norm.1}) has been already used, duplicate ignor ed \relax l.8138 \HeaderA{norm}{Matrix Norms}{norm} [2267] [2268] Underfull \hbox (badness 5161) in paragraph at lines 8411--8414 []\T1/zi4/m/sl/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2269] Underfull \hbox (badness 10000) in paragraph at lines 8501--8504 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2270] Underfull \hbox (badness 10000) in paragraph at lines 8577--8580 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/sl/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/sl/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2271] Underfull \vbox (badness 10000) has occurred while \output is active [2272] Underfull \hbox (badness 6141) in paragraph at lines 8703--8705 []\T1/zi4/m/sl/10 signature(x = "matrix", y = "pMatrix") \T1/ptm/m/n/10 and oth er sig-na-tures (use [2273] [2274] [2275] [2276]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.qr}) has been already used, duplicate ignored \relax l.8938 \aliasA{qr}{qr-methods}{qr} Underfull \hbox (badness 5119) in paragraph at lines 8984--8987 []\T1/ptm/m/n/10 QR de-com-po-si-tion of a gen-eral sparse double-precision ma- trix with [2277] [2278] Underfull \hbox (badness 10000) in paragraph at lines 9104--9110 []\T1/ptm/m/n/10 for a dense ma-trix, this is the rank of [2279] [2280]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.rcond}) has been already used, duplicate ignored \relax l.9234 ... the Reciprocal Condition Number}{rcond} [2281] [2282] [2283] [2284] [2285] [2286] [2287] [2288]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.solve}) has been already used, duplicate ignored \relax l.9811 \aliasA{solve}{solve-methods}{solve} [2289] Underfull \hbox (badness 10000) in paragraph at lines 9948--9960 []\T1/ptm/m/n/10 The \T1/zi4/m/sl/10 solve \T1/ptm/m/n/10 meth-ods for a Underfull \hbox (badness 10000) in paragraph at lines 9974--9981 []\T1/ptm/m/n/10 with ex-tra ar-gu-ment list Underfull \hbox (badness 10000) in paragraph at lines 9987--9997 []\T1/ptm/m/n/10 with ex-tra ar-gu-ment list Underfull \hbox (badness 1122) in paragraph at lines 10021--10023 []\T1/ptm/m/n/10 all end up call-ing LA-PACK rou-tines \T1/zi4/m/sl/10 dsptri\T 1/ptm/m/n/10 , [2290] Underfull \hbox (badness 1210) in paragraph at lines 10035--10038 []\T1/ptm/m/n/10 , and sim-i-lar \T1/zi4/m/sl/10 b\T1/ptm/m/n/10 , in-clud-ing \T1/zi4/m/sl/10 "missing"\T1/ptm/m/n/10 , and Underfull \hbox (badness 10000) in paragraph at lines 10105--10108 []\T1/ptm/m/n/10 Construct a sparse model or ``de-sign'' ma-trix, form a for-mu la and data frame [2291] Underfull \hbox (badness 10000) in paragraph at lines 10141--10144 []\T1/ptm/m/n/10 character string or \T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or (co -er-ca-ble to) Underfull \hbox (badness 10000) in paragraph at lines 10152--10156 []\T1/ptm/m/n/10 should fac-tors have un-used lev-els dropped? The de-fault for [2292] [2293] [2294] [2295] [2296] [2297] [2298] [2299] [2300]pdfTeX warning (e xt4): destination with the same identifier (name{Rfn.qr.Q}) has been already us ed, duplicate ignored \relax l.10806 \aliasA{qr.Q}{sparseQR-class}{qr.Q} [2301] [2302] Underfull \hbox (badness 5036) in paragraph at lines 10992--10994 []\T1/ptm/m/n/10 vector of the non zero en-tries; may be miss-ing in which case a [2303] [2304] Underfull \hbox (badness 10000) in paragraph at lines 11198--11201 []\T1/zi4/m/sl/10 signature(x = "sparseVector") \T1/ptm/m/n/10 re-peat \T1/zi4/ m/sl/10 x\T1/ptm/m/n/10 , with the same ar-gu-ment list [2305] Underfull \vbox (badness 10000) has occurred while \output is active [2306] [2307] [2308] Underfull \hbox (badness 10000) in paragraph at lines 11467--11472 []\T1/ptm/m/n/10 The va-lid-ity checks do not re-quire a sym-met-ric \T1/zi4/m/ sl/10 Dimnames \T1/ptm/m/n/10 slot, so it can be [2309] Underfull \hbox (badness 2057) in paragraph at lines 11547--11549 []\T1/ptm/m/n/10 These are generic func-tions with sev-eral meth-ods for dif-fe r-ent ma-trix classes, use e.g., [2310] [2311] Underfull \hbox (badness 1831) in paragraph at lines 11722--11728 []\T1/ptm/m/n/10 For con-ve-nience, meth-ods for some op-er-a-tions such as \T1 /zi4/m/sl/10 %*% \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 crossprod \T1/ptm/m/n/10 ar e de-fined [2312] Underfull \hbox (badness 1902) in paragraph at lines 11757--11761 []\T1/ptm/m/n/10 Note that \T1/zi4/m/sl/10 new(.)\T1/ptm/m/n/10 , [][]\T1/zi4/m /sl/10 spMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/sl/10 sparseMatrix[][][] \T1/ptm/m/n/10 con-struc-tors for \T1/zi4/m/sl/10 "dgTMatrix" \T1/ptm/m/n/10 (a nd other [2313] [2314] [2315] [2316] [2317] [2318] Underfull \hbox (badness 6910) in paragraph at lines 12270--12272 []\T1/ptm/m/n/10 is cur-rently a sim-ple fall-back [2319] [2320] [2321]) (./boot-pkg.tex [2322] Chapter 18. [2323] [2324] [2325] [2326] [2327] [2328] [2329] [2330] [2331] [2332] Underfull \hbox (badness 5667) in paragraph at lines 797--807 \T1/ptm/m/n/10 or \T1/zi4/m/sl/10 parallel = "snow" \T1/ptm/m/n/10 us-ing the d e-fault clus-ter, a sec-ond ap-proach is used if [2333] Underfull \hbox (badness 1881) in paragraph at lines 824--826 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2334] Underfull \vbox (badness 10000) has occurred while \output is active [2335] [2336] Underfull \hbox (badness 10000) in paragraph at lines 1066--1070 []\T1/ptm/m/n/10 A vec-tor of char-ac-ter strings rep-re-sent-ing the type of i n-ter- Underfull \hbox (badness 10000) in paragraph at lines 1066--1070 \T1/ptm/m/n/10 vals re-quired. The value should be any sub-set of the val-ues [2337] Underfull \hbox (badness 2150) in paragraph at lines 1103--1109 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est. The de-fa ult value is [2338] [2339] [2340] [2341] Underfull \hbox (badness 1571) in paragraph at lines 1443--1445 []\T1/ptm/m/n/10 Rawlings, J.O. (1988) \T1/ptm/m/it/10 Ap-plied Re-gres-sion An al-y-sis\T1/ptm/m/n/10 . Wadsworth and Brooks/Cole Statis- [2342] [2343] [2344] [2345] [2346] [2347] Underfull \hbox (badness 1005) in paragraph at lines 1797--1804 []\T1/ptm/m/n/10 The sim-u-la-tion type. Pos-si-ble types are \T1/zi4/m/sl/10 " ordinary" \T1/ptm/m/n/10 (case re-sam-pling), [2348] [2349] Underfull \vbox (badness 10000) has occurred while \output is active [2350] Underfull \hbox (badness 7379) in paragraph at lines 2081--2083 []\T1/ptm/m/n/10 The length of time (in months) that the res-i-dent spent at Ch an-ning House. [2351] [2352] [2353] [2354] Underfull \hbox (badness 1565) in paragraph at lines 2335--2340 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est on the ori g-i-nal data set [2355] Underfull \hbox (badness 1881) in paragraph at lines 2429--2431 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2356] [2357] Underfull \hbox (badness 2970) in paragraph at lines 2533--2537 []\T1/ptm/m/n/10 The un-bi-ased es-ti-ma-tor uses a mul-ti-plier of \T1/zi4/m/s l/10 n/((n-1)*(n-2)) \T1/ptm/m/n/10 where \T1/zi4/m/sl/10 n \T1/ptm/m/n/10 is t he sam-ple Underfull \hbox (badness 2310) in paragraph at lines 2533--2537 \T1/ptm/m/n/10 size, if \T1/zi4/m/sl/10 unbiased \T1/ptm/m/n/10 is \T1/zi4/m/sl /10 FALSE \T1/ptm/m/n/10 then a mul-ti-plier of \T1/zi4/m/sl/10 1/n \T1/ptm/m/n /10 is used. This is mul-ti-plied by [2358] [2359] [2360] [2361] [2362] [2363] [2364] [2365] [2366] [2367] [2368] [2369] [2370] [2371] [2372] [2373] [2374] [2375] [2376] [2377] [2378] [2379] [2380] Underfull \hbox (badness 10000) in paragraph at lines 4187--4189 []\T1/ptm/m/n/10 The quan-tiles at which the plots are re-quired. The de-fault is [2381] [2382] [2383] Underfull \hbox (badness 2393) in paragraph at lines 4386--4389 []\T1/ptm/m/n/10 The lin-ear ap-prox-i-ma-tion to a boot-strap repli-cate with fre-quency vec-tor \T1/zi4/m/sl/10 f \T1/ptm/m/n/10 is given by [2384] [2385] [2386] [2387] [2388] [2389] [2390] [2391] Underfull \hbox (badness 3000) in paragraph at lines 4956--4959 []\T1/ptm/m/n/10 The in-dex of the statis-tic of in-ter-est within the out-put of a call to [2392] [2393] [2394] [2395] Underfull \hbox (badness 2293) in paragraph at lines 5235--5238 []\T1/ptm/m/n/10 An in-te-ger giv-ing the num-ber of classes to be used in the boot-strap Underfull \hbox (badness 1668) in paragraph at lines 5235--5238 \T1/ptm/m/n/10 his-togram. The de-fault is the in-te-ger be-tween 10 and 100 cl os-est to [2396] [2397] [2398] [2399] [2400] [2401] [2402] [2403] [2404] [2405] [2406] Underfull \hbox (badness 4954) in paragraph at lines 6018--6021 []\T1/ptm/m/n/10 The re-turned value is an ob-ject of class \T1/zi4/m/sl/10 "sa ddle.distn"\T1/ptm/m/n/10 . See the help file for [2407] [2408] [2409] [2410] [2411] [2412] [2413] [2414] [2415] Underfull \hbox (badness 1596) in paragraph at lines 6739--6743 []\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sec-ond ar-gu-m ent ex-pected by [2416] [2417] [2418] [2419] [2420] [2421] [2422] [2423] [2424] [2425]) (./class-pkg.tex [2426] Chapter 19. [2427] [2428] [2429] [2430] [2431] [2432] [2433] [2434] Underfull \hbox (badness 10000) in paragraph at lines 608--610 []\T1/ptm/m/n/10 the size of the code-book. De-faults to [2435] [2436] [2437] [2438] [2439] [2440] [2441] [2442]) (./cluster-pkg.tex Chapter 20. [2443] [2444] [2445] [2446] [2447] Underfull \vbox (badness 7777) has occurred while \output is active [2448] [2449] [2450] [2451] [2452] Underfull \hbox (badness 4144) in paragraph at lines 688--691 []\T1/ptm/m/n/10 Setting this to \T1/zi4/m/sl/10 FALSE \T1/ptm/m/n/10 saves mem -ory (and hence time), but dis-ables [2453] [2454] [2455] Underfull \hbox (badness 10000) in paragraph at lines 863--865 []\T1/ptm/m/n/10 list with sil-hou-ette width in-for-ma-tion for the best sam-p le, see [2456] [2457] Underfull \hbox (badness 10000) in paragraph at lines 974--976 []\T1/ptm/m/n/10 simply cor-re-sponds to the global max-i-mum, i.e., is Underfull \hbox (badness 1342) in paragraph at lines 988--992 []\T1/ptm/m/n/10 This, the de-fault, has been pro-posed by Mar-tin Maech-ler in 2012, [2458] [2459] [2460] Underfull \hbox (badness 6110) in paragraph at lines 1182--1186 []\T1/ptm/m/n/10 when \T1/zi4/m/sl/10 x \T1/ptm/m/n/10 does not have a \T1/zi4/ m/sl/10 diss \T1/ptm/m/n/10 nor a \T1/zi4/m/sl/10 data \T1/ptm/m/n/10 com-po-ne nt, e.g., for [2461] [2462] [2463] Underfull \hbox (badness 10000) in paragraph at lines 1451--1454 [2464] [2465] Underfull \hbox (badness 2503) in paragraph at lines 1563--1566 []\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/sl/10 "hclust" \T1/ptm/m/n/10 or \T1/zi4/m/sl/10 "twins"\T1/ptm/m/n/10 , i.e., typ-i-cally the re-sult of [2466] [2467] [2468] [2469] [2470] [2471] [2472] [2473] Underfull \hbox (badness 10000) in paragraph at lines 2154--2157 Underfull \hbox (badness 10000) in paragraph at lines 2168--2174 [][][]\T1/zi4/m/sl/10 predict.ellipsoid[][][] \T1/ptm/m/n/10 which is also the [][]\T1/zi4/m/sl/10 predict[][][] \T1/ptm/m/n/10 method for \T1/zi4/m/sl/10 ell ipsoid \T1/ptm/m/n/10 ob-jects. [2474] [2475] [2476] [2477] Underfull \hbox (badness 6675) in paragraph at lines 2403--2405 []\T1/ptm/m/n/10 list with sil-hou-ette in-for-ma-tion of the near-est crisp cl us-ter-ing, see [2478] [2479] [2480] [2481] [2482] [2483] [2484] Underfull \hbox (badness 2980) in paragraph at lines 2871--2875 [][][]\T1/zi4/m/sl/10 agnes[][][] \T1/ptm/m/n/10 for back-ground and ref-er-enc es; [][]\T1/zi4/m/sl/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 cl ara[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 daisy[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/sl/10 partition.object[][][]\T1/ptm/m/n/10 , [2485] [2486] [2487] [2488] [2489] Underfull \hbox (badness 1142) in paragraph at lines 3212--3215 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/sl/10 par[][][]\T1/ ptm/m/n/10 ) may also be sup-plied and are passed to [2490] [2491] Underfull \hbox (badness 1142) in paragraph at lines 3331--3334 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/sl/10 par[][][]\T1/ ptm/m/n/10 ) may also be sup-plied and are passed to [2492] [2493] [2494] [2495] Underfull \hbox (badness 2582) in paragraph at lines 3554--3559 [][][]\T1/zi4/m/sl/10 partition.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 clusplot.partition[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 clusplot.default [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 pam[][][]\T1/ptm/m/n/10 , [][]\T1/zi 4/m/sl/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 clara[][][]\T1/p tm/m/n/10 , [2496] Underfull \hbox (badness 10000) in paragraph at lines 3616--3621 []\T1/ptm/m/n/10 Note that cur-rently the method func-tion sim-ply calls \T1/zi 4/m/sl/10 plot([][]as.hclust[][][](x), ...)\T1/ptm/m/n/10 , Underfull \hbox (badness 4378) in paragraph at lines 3616--3621 \T1/ptm/m/n/10 which dis-patches to [][]\T1/zi4/m/sl/10 plot.hclust[][][](..)\T 1/ptm/m/n/10 . If more flex-i-ble plots are needed, con-sider [2497] [2498] [2499] [2500] Underfull \hbox (badness 10000) in paragraph at lines 3908--3910 []\T1/ptm/m/n/10 a \T1/zi4/m/sl/10 dissimilarity \T1/ptm/m/n/10 ob-ject or a \T 1/zi4/m/sl/10 summary.dissimilarity \T1/ptm/m/n/10 one for [2501] [2502] [2503] [2504] Underfull \hbox (badness 4108) in paragraph at lines 4132--4137 []\T1/ptm/m/n/10 arguments passed [][]\T1/zi4/m/sl/10 barplot[][][]()\T1/ptm/m/ n/10 ; note that the de-fault used to be \T1/zi4/m/sl/10 col [2505] Underfull \hbox (badness 1383) in paragraph at lines 4210--4215 []\T1/ptm/m/n/10 While \T1/zi4/m/sl/10 silhouette() \T1/ptm/m/n/10 is \T1/ptm/m /it/10 in-trin-sic \T1/ptm/m/n/10 to the [][]\T1/zi4/m/sl/10 partition[][][] \T 1/ptm/m/n/10 clus-ter-ings, and hence has a (triv-ial) [2506] [2507] [2508] [2509] [2510] [2511] [2512] Underfull \hbox (badness 10000) in paragraph at lines 4638--4640 []\T1/ptm/m/n/10 Sample data set ac-com-pa-ny-ing the ref-er-ence be-low (file `\T1/zi4/m/sl/10 xclara.dat\T1/ptm/m/n/10 ' in side [2513]) (./codetools-pkg.tex [2514] Chapter 21. [2515] [2516] [2517] [2518] [2519]) (./foreign-pkg.tex [2520] Chapter 22. [2521] [2522] [2523] [2524] [2525] [2526] [2527] [2528] Underfull \hbox (badness 10000) in paragraph at lines 506--515 []\T1/ptm/m/n/10 character: what to do with du-pli-cated value la-bels for dif- fer- Underfull \hbox (badness 10000) in paragraph at lines 506--515 \T1/ptm/m/n/10 ent lev-els. For \T1/zi4/m/sl/10 "append" \T1/ptm/m/n/10 (the de -fault), the first orig-i-nal value Underfull \hbox (badness 10000) in paragraph at lines 506--515 \T1/ptm/m/n/10 la-bel is kept while fur-ther du-pli-cated la-bels are re-named to Underfull \hbox (badness 10000) in paragraph at lines 506--515 \T1/zi4/m/sl/10 paste0(label, duplicated.value.labels.infix, level)\T1/ptm/m/n/ 10 , for Underfull \hbox (badness 1708) in paragraph at lines 506--515 \T1/zi4/m/sl/10 "condense"\T1/ptm/m/n/10 , all lev-els with iden-ti-cal la-bels are con-densed into ex-actly [2529] Overfull \hbox (6.73795pt too wide) in paragraph at lines 625--625 []\T1/zi4/m/n/9 ### Expect lots of warnings as value labels (corresponding to R factor labels) are uncomplete,[] [2530] [2531] [2532] Underfull \hbox (badness 10000) in paragraph at lines 813--814 [2533] [2534] [2535] [2536] [2537] [2538] [2539] Underfull \hbox (badness 10000) in paragraph at lines 1267--1273 []\T1/ptm/m/n/10 The work for this func-tion is done by \T1/zi4/m/sl/10 foreign :::writeForeignStata\T1/ptm/m/n/10 , [2540] [2541]) (./lattice-pkg.tex [2542] Chapter 23. [2543] [2544] [2545] [2546] [2547] [2548] Underfull \hbox (badness 10000) in paragraph at lines 479--484 []\T1/ptm/m/n/10 A po-ten-tially use-ful com-po-nent of \T1/zi4/m/sl/10 scales \T1/ptm/m/n/10 in this case may be Underfull \hbox (badness 1472) in paragraph at lines 479--484 \T1/zi4/m/sl/10 abbreviate = TRUE\T1/ptm/m/n/10 , in which case long la-bels wh ich would usu-ally [2549] [2550] [2551] [2552] [2553] [2554] [2555] [2556] [2557] [2558] Underfull \hbox (badness 1062) in paragraph at lines 1398--1402 \T1/ptm/m/n/10 no-ta-tion for the x and y axes re-spec-tively. See doc-u-men-ta -tion for [2559] Underfull \vbox (badness 4416) has occurred while \output is active [2560] Underfull \hbox (badness 1803) in paragraph at lines 1566--1583 [][][]\T1/zi4/m/sl/10 Lattice[][][] \T1/ptm/m/n/10 for an overview of the pack- age, as well as [][]\T1/zi4/m/sl/10 barchart.table[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/sl/10 print.trellis[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1566--1583 [][]\T1/zi4/m/sl/10 panel.stripplot[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 p anel.superpose[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 panel.loess[][][]\T1/p tm/m/n/10 , [][]\T1/zi4/m/sl/10 panel.average[][][]\T1/ptm/m/n/10 , [][]\T1/zi4 /m/sl/10 strip.default[][][]\T1/ptm/m/n/10 , [2561] [2562] [2563] Underfull \hbox (badness 3009) in paragraph at lines 1725--1727 []\T1/ptm/m/n/10 additional ar-gu-ments passed to [][]\T1/zi4/m/sl/10 xyplot[][ ][]\T1/ptm/m/n/10 , which may pass them on to Underfull \hbox (badness 6808) in paragraph at lines 1755--1759 []\T1/ptm/m/n/10 graphical ar-gu-ments, which are pro-cessed and even-tu-ally p assed to [2564] [2565] [2566] [2567] [2568] Underfull \hbox (badness 10000) in paragraph at lines 2141--2144 []\T1/ptm/m/n/10 When \T1/zi4/m/sl/10 breaks \T1/ptm/m/n/10 is un-spec-i-fied, the value of [2569] [2570] [2571] [2572] Underfull \hbox (badness 7064) in paragraph at lines 2362--2366 []\T1/ptm/m/n/10 For the \T1/zi4/m/sl/10 "formula" \T1/ptm/m/n/10 method, \T1/z i4/m/sl/10 x \T1/ptm/m/n/10 should be a for-mula of the form [2573] [2574] Underfull \hbox (badness 7064) in paragraph at lines 2547--2554 []\T1/ptm/m/n/10 For the \T1/zi4/m/sl/10 "formula" \T1/ptm/m/n/10 method, \T1/z i4/m/sl/10 x \T1/ptm/m/n/10 should be a for-mula of the form [2575] [2576] [2577] [2578] Underfull \hbox (badness 2781) in paragraph at lines 2848--2850 []\T1/ptm/m/n/10 A color ramp spec-i-fi-ca-tion, as in the \T1/zi4/m/sl/10 col. regions \T1/ptm/m/n/10 ar-gu-ment in [2579] Underfull \hbox (badness 2486) in paragraph at lines 2959--2963 []\T1/ptm/m/n/10 Other use-ful ar-gu-ments are men-tioned in the help page for the de-fault panel func-tion [2580] [2581] [2582] Underfull \hbox (badness 10000) in paragraph at lines 3110--3118 []\T1/ptm/m/n/10 For the \T1/zi4/m/sl/10 "formula" \T1/ptm/m/n/10 meth-ods, a f or-mula of the form \T1/zi4/m/sl/10 z ~ x [2583] [2584] [2585] [2586]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.parallel}) has been already used, duplicate ignored \relax l.3431 \aliasA{parallel}{B\_08\_splom}{parallel} [2587] [2588] [2589] [2590] [2591] [2592] [2593] Underfull \hbox (badness 5696) in paragraph at lines 3922--3926 []\T1/ptm/m/n/10 A pos-si-ble use of this ar-gu-ment is to change the de-fault set-tings Underfull \hbox (badness 4647) in paragraph at lines 3922--3926 \T1/ptm/m/n/10 by spec-i-fy-ing \T1/zi4/m/sl/10 lattice.options(default.theme = "col.whitebg")\T1/ptm/m/n/10 . Underfull \hbox (badness 2435) in paragraph at lines 3922--3926 \T1/ptm/m/n/10 For back-compatibility, this is ini-tially (when lat-tice is loa ded) set to [2594] [2595] Underfull \hbox (badness 1173) in paragraph at lines 4061--4065 []\T1/ptm/m/n/10 A char-ac-ter string giv-ing the name of a com-po-nent. If un- spec-i-fied in Underfull \hbox (badness 3219) in paragraph at lines 4088--4090 []\T1/ptm/m/n/10 A log-i-cal flag, in-di-cat-ing whether a warn-ing should be i s-sued when [2596] [2597] [2598] Underfull \hbox (badness 3492) in paragraph at lines 4284--4294 []\T1/ptm/m/n/10 A color spec-i-fi-ca-tion. \T1/zi4/m/sl/10 col \T1/ptm/m/n/10 is used for com-po-nents \T1/zi4/m/sl/10 "plot.symbol"\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4309--4312 []\T1/ptm/m/n/10 fill color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/sl/10 plo t.symbol\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 plot.polygon\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4312--4314 []\T1/ptm/m/n/10 border color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/sl/10 p lot.polygon \T1/ptm/m/n/10 and [2599] [2600] [2601] [2602] [2603] [2604] [2605] [2606] [2607] [2608] Underfull \hbox (badness 6157) in paragraph at lines 5035--5038 []\T1/zi4/m/sl/10 plot.shingle \T1/ptm/m/n/10 dis-plays the ranges of shin-gles via rect-an-gles. \T1/zi4/m/sl/10 print.shingle \T1/ptm/m/n/10 and [2609] [2610] [2611] [2612] [2613] [2614] Underfull \hbox (badness 10000) in paragraph at lines 5486--5489 []\T1/ptm/m/n/10 logical, spec-i-fy-ing whether the la-bels etc should be hor-i -zon-tal. Underfull \hbox (badness 5592) in paragraph at lines 5486--5489 \T1/zi4/m/sl/10 horizontal=FALSE \T1/ptm/m/n/10 is use-ful for strips on the le ft of pan-els us-ing [2615] [2616] [2617] [2618] [2619] Underfull \hbox (badness 4805) in paragraph at lines 5846--5850 []\T1/ptm/m/n/10 logical, whether the view-port be-ing as-signed fo-cus should be high- Underfull \hbox (badness 10000) in paragraph at lines 5857--5864 []\T1/ptm/m/n/10 For \T1/zi4/m/sl/10 panel.identify.qqmath\T1/ptm/m/n/10 , ex-t ra pa-ram-e-ters are passed on to Underfull \hbox (badness 1226) in paragraph at lines 5857--5864 \T1/zi4/m/sl/10 panel.identify\T1/ptm/m/n/10 . For \T1/zi4/m/sl/10 panel.identi fy\T1/ptm/m/n/10 , ex-tra ar-gu-ments are treated as Underfull \hbox (badness 2418) in paragraph at lines 5857--5864 \T1/ptm/m/n/10 graph-i-cal pa-ram-e-ters and are used for la-belling. For \T1/z i4/m/sl/10 trellis.focus Underfull \hbox (badness 10000) in paragraph at lines 5857--5864 \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 trellis.switchFocus\T1/ptm/m/n/10 , these ar e used (in com-bi-na-tion with Underfull \hbox (badness 1259) in paragraph at lines 5857--5864 [][]\T1/zi4/m/sl/10 lattice.options[][][]\T1/ptm/m/n/10 ) for high-light-ing th e cho-sen view-port if so re-quested. [2620] [2621] [2622] [2623] Underfull \hbox (badness 4242) in paragraph at lines 6157--6162 []\T1/ptm/m/n/10 Graphical pa-ram-e-ters for the bars. By de-fault, the trel-li s pa-ram-e- Underfull \hbox (badness 2529) in paragraph at lines 6157--6162 \T1/ptm/m/n/10 ter \T1/zi4/m/sl/10 plot.polygon \T1/ptm/m/n/10 is used if there is no group-ing vari-able, oth-er-wise [2624] [2625] Underfull \hbox (badness 2310) in paragraph at lines 6273--6278 []\T1/ptm/m/n/10 Creates Box and Whisker plot of \T1/zi4/m/sl/10 x \T1/ptm/m/n/ 10 for ev-ery level of \T1/zi4/m/sl/10 y \T1/ptm/m/n/10 (or the other way round if [2626] [2627] [2628] [2629] [2630] [2631] [2632] [2633] [2634] [2635] [2636] Underfull \hbox (badness 3168) in paragraph at lines 7055--7059 \T1/ptm/m/n/10 to know what ar-gu-ments this func-tion is passed when called. U se [2637] [2638] [2639] [2640] Underfull \hbox (badness 2012) in paragraph at lines 7326--7329 []\T1/ptm/m/n/10 Further ar-gu-ments, of-ten graph-i-cal pa-ram-e-ters, even-tu -ally passed on to [2641] [2642] Underfull \hbox (badness 3333) in paragraph at lines 7498--7500 []\T1/ptm/m/n/10 default colours are ob-tained from \T1/zi4/m/sl/10 plot.symbol \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 plot.line \T1/ptm/m/n/10 us-ing [2643] [2644] [2645] Underfull \vbox (badness 10000) has occurred while \output is active [2646] [2647] [2648] Underfull \hbox (badness 1436) in paragraph at lines 7912--7918 []\T1/ptm/m/n/10 A log-i-cal flag de-ter-min-ing whether the de-fault graph-i-c al pa-ram-e-ters for Underfull \hbox (badness 1661) in paragraph at lines 7912--7918 \T1/zi4/m/sl/10 panel.abline \T1/ptm/m/n/10 should be taken from the ``ref-er-e nce.line'' pa-ram-e-ter set- Underfull \hbox (badness 1231) in paragraph at lines 7912--7918 \T1/ptm/m/n/10 tings. The de-fault is to take them from the ``add.line'' set-ti ngs. The [2649] [2650] [2651] [2652] [2653] [2654] [2655] [2656] Underfull \hbox (badness 10000) in paragraph at lines 8470--8473 []\T1/ptm/m/n/10 Extra ar-gu-ments. Passed down to \T1/zi4/m/sl/10 panel.superp ose \T1/ptm/m/n/10 from [2657] Underfull \hbox (badness 1092) in paragraph at lines 8516--8518 []\T1/ptm/m/n/10 Deepayan Sarkar \T1/zi4/m/sl/10 \T1/ptm/m/n/10 (\T1/zi4/m/sl/10 panel.superpose.2 \T1/ptm/m/n/10 orig-i-nally con- [2658] [2659] Underfull \hbox (badness 3895) in paragraph at lines 8677--8680 []\T1/ptm/m/n/10 details of his-togram cal-cu-la-tions. \T1/zi4/m/sl/10 type \T 1/ptm/m/n/10 has a dif-fer-ent mean-ing in [2660] Underfull \hbox (badness 1515) in paragraph at lines 8753--8757 []\T1/ptm/m/n/10 numeric vec-tor of length two, rep-re-sent-ing prob-a-bil-i-ti es. If used with [2661] [2662] Underfull \hbox (badness 6316) in paragraph at lines 8859--8864 []\T1/ptm/m/n/10 which packet (counted ac-cord-ing to the packet or-der, de-scr ibed in Underfull \hbox (badness 5908) in paragraph at lines 8876--8879 []\T1/ptm/m/n/10 list, sim-i-lar to those pro-duced by \T1/zi4/m/sl/10 xscale.c omponents.default \T1/ptm/m/n/10 and [2663] [2664] [2665] [2666] Overfull \hbox (25.25827pt too wide) in paragraph at lines 9164--9168 []\T1/ptm/m/n/10 returns a list with sev-eral com-po-nents, in-clud-ing \T1/zi4 /m/sl/10 left, right, left.name, right.name, condition Overfull \hbox (14.60007pt too wide) in paragraph at lines 9164--9168 \T1/ptm/m/n/10 for 2-D, and \T1/zi4/m/sl/10 left, right.x, right.y, left.nam e, right.x.name, right.y.name, condition [2667] [2668] [2669] [2670] [2671] [2672] [2673] [2674] [2675] [2676]pdfTeX war ning (ext4): destination with the same identifier (name{Rfn.melanoma}) has been already used, duplicate ignored \relax l.9853 \aliasA{melanoma}{H\_melanoma}{melanoma} [2677] [2678] [2679] Underfull \hbox (badness 4144) in paragraph at lines 10077--10080 []\T1/ptm/m/n/10 Rural Health Re-form Pol-icy Re-search Cen-ter. _Ex-plor-ing R u-ral and Ur-ban Mor-tal- Underfull \hbox (badness 1509) in paragraph at lines 10077--10080 \T1/ptm/m/n/10 ity Dif-fer-ences_, Au-gust 2015 Bethesda, MD. [][]$\T1/zi4/m/sl /10 https : / / ruralhealth . und . edu / projects / [2680] [2681]) (./mgcv-pkg.tex [2682] Chapter 24. [2683] [2684] [2685] Underfull \hbox (badness 1142) in paragraph at lines 171--175 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from Underfull \hbox (badness 1043) in paragraph at lines 196--201 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2686] [2687] [2688] Underfull \hbox (badness 10000) in paragraph at lines 358--365 [][][]\T1/zi4/m/sl/10 mgcv.parallel[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 m gcv-package[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gamObject[][][]\T1/ptm/m/ n/10 , [][]\T1/zi4/m/sl/10 gam.models[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 smooth.terms[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 7168) in paragraph at lines 358--365 [][]\T1/zi4/m/sl/10 linear.functional.terms[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m /sl/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 te[][][] [][]predict.gam[][] []\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.gam[][][]\T1/ptm/m/n/10 , [][]\T1/z i4/m/sl/10 summary.gam[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gam.side[][][] \T1/ptm/m/n/10 , [2689] [2690] [2691] [2692] [2693] [2694] Underfull \hbox (badness 1158) in paragraph at lines 665--667 []\T1/ptm/m/n/10 Choosing the ba-sis di-men-sion, and check-ing the choice, whe n us-ing pe-nal-ized re-gres-sion [2695] Underfull \hbox (badness 1259) in paragraph at lines 728--729 []\T1/ptm/m/n/10 Wood, S.N. (2017) Gen-er-al-ized Ad-di-tive Mod-els: An In-tro -duc-tion with R (2nd edi-tion). [2696] Underfull \vbox (badness 10000) has occurred while \output is active [2697] [2698] [2699] [2700] [2701] [2702] [2703] [2704] [2705] [2706] [2707] [2708] [2709] [2710] [2711] [2712] [2713] [2714] Underfull \vbox (badness 5681) has occurred while \output is active [2715] [2716] [2717] [2718] [2719] Underfull \hbox (badness 1142) in paragraph at lines 2102--2106 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from Underfull \hbox (badness 1043) in paragraph at lines 2128--2133 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2720] [2721] [2722] [2723] [2724] [2725] Underfull \vbox (badness 10000) has occurred while \output is active [2726] Underfull \vbox (badness 10000) has occurred while \output is active [2727] [2728] [2729] [2730] [2731] [2732] [2733] [2734] [2735] [2736] [2737] [2738] [2739] [2740] [2741] Underfull \hbox (badness 10000) in paragraph at lines 3436--3440 []\T1/ptm/m/n/10 Random ef-fects can be added to \T1/zi4/m/sl/10 gam \T1/ptm/m/ n/10 mod-els us-ing \T1/zi4/m/sl/10 s(...,bs="re") \T1/ptm/m/n/10 terms (see [2742] Underfull \vbox (badness 10000) has occurred while \output is active [2743] Underfull \vbox (badness 10000) has occurred while \output is active [2744] [2745] Underfull \hbox (badness 1184) in paragraph at lines 3722--3726 []\T1/ptm/m/n/10 list of the square root penal-ties: last en-try is root of fix ed penalty, if [2746] [2747] [2748] [2749] [2750] [2751] [2752] [2753] [2754] [2755] [2756] [2757] Underfull \hbox (badness 1142) in paragraph at lines 4443--4447 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2758] [2759] Underfull \hbox (badness 1231) in paragraph at lines 4544--4546 []\T1/zi4/m/sl/10 gamm \T1/ptm/m/n/10 per-forms poorly with bi-nary data, since it uses PQL. It is bet-ter to use \T1/zi4/m/sl/10 gam \T1/ptm/m/n/10 with [2760] [2761] Underfull \vbox (badness 10000) has occurred while \output is active [2762] [2763] [2764] Underfull \hbox (badness 2181) in paragraph at lines 4916--4917 []\T1/ptm/m/n/10 one sided for-mula con-tain-ing vari-ables needed for pre-dic- tion, used by [2765] [2766] [2767] [2768] [2769] [2770] [2771] [2772] [2773] [2774] [2775] [2776] [2777] Underfull \hbox (badness 1142) in paragraph at lines 5658--5662 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2778] [2779] [2780] [2781] [2782] [2783] Underfull \hbox (badness 1087) in paragraph at lines 5952--5953 []\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 rho \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 thet a \T1/ptm/m/n/10 were sup-plied then deriva-tives are w.r.t. these. In this cas e, and if [2784] [2785] Underfull \vbox (badness 10000) has occurred while \output is active [2786] [2787] [2788] [2789] [2790] [2791] [2792] [2793] [2794] [2795] Underfull \vbox (badness 4805) has occurred while \output is active [2796] [2797] Underfull \hbox (badness 1242) in paragraph at lines 6848--6849 []\T1/ptm/m/n/10 Development of mgcv ver-sion 1.8 was part funded by EP-SRC gra nts EP/K005251/1 and [2798] [2799] [2800] [2801] Underfull \vbox (badness 10000) has occurred while \output is active [2802] [2803] [2804] [2805] [2806] [2807] [2808] [2809] Underfull \hbox (badness 6001) in paragraph at lines 7488--7490 []\T1/ptm/m/n/10 Simon N. Wood \T1/zi4/m/sl/10 \T1/p tm/m/n/10 mod-i-fied from Ven-ables and Rip-ley's [2810] [2811] [2812] [2813] [2814] [2815] [2816] [2817] [2818] [2819] Underfull \vbox (badness 10000) has occurred while \output is active [2820] [2821] Underfull \hbox (badness 1038) in paragraph at lines 8237--8240 []\T1/ptm/m/n/10 The fol-low-ing func-tions are pro-vided: \T1/zi4/m/sl/10 Dim. pdIndot\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 coef.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/ sl/10 corMatrix.pdIdnot\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 8237--8240 \T1/zi4/m/sl/10 logDet.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdConstruct.pdId not\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdFactor.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/ sl/10 pdMatrix.pdIdnot\T1/ptm/m/n/10 , [2822] Underfull \hbox (badness 10000) in paragraph at lines 8293--8296 []\T1/ptm/m/n/10 These func-tions (\T1/zi4/m/sl/10 pdTens\T1/ptm/m/n/10 , \T1/z i4/m/sl/10 pdConstruct.pdTens\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdFactor.pdTens\T 1/ptm/m/n/10 , \T1/zi4/m/sl/10 pdMatrix.pdTens\T1/ptm/m/n/10 , [2823] [2824] [2825] [2826] [2827] [2828] [2829] [2830] [2831] [2832] [2833] Underfull \hbox (badness 1852) in paragraph at lines 8961--8964 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/sl/10 termplot[] [][]\T1/ptm/m/n/10 , if \T1/zi4/m/sl/10 object \T1/ptm/m/n/10 pos-sesses an at- tribute \T1/zi4/m/sl/10 "para.only" \T1/ptm/m/n/10 and [2834] [2835] Underfull \hbox (badness 1852) in paragraph at lines 9123--9126 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/sl/10 termplot[] [][]\T1/ptm/m/n/10 , if \T1/zi4/m/sl/10 object \T1/ptm/m/n/10 pos-sesses an at- tribute \T1/zi4/m/sl/10 "para.only" \T1/ptm/m/n/10 and [2836] [2837] Underfull \vbox (badness 10000) has occurred while \output is active [2838] Underfull \vbox (badness 10000) has occurred while \output is active [2839] Underfull \hbox (badness 1205) in paragraph at lines 9350--9352 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 9350--9352 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for Underfull \hbox (badness 1975) in paragraph at lines 9356--9361 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [2840] Underfull \hbox (badness 1205) in paragraph at lines 9440--9442 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 9440--9442 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for [2841] [2842] [2843] [2844] Underfull \hbox (badness 1253) in paragraph at lines 9639--9641 []\T1/ptm/m/n/10 Note that the op-ti-mized smooth-ing pa-ram-e-ter se-lec-tion cri-te-rion re-ported is one of GCV, [2845] [2846] [2847] Underfull \hbox (badness 4792) in paragraph at lines 9825--9828 []\T1/ptm/m/n/10 Alternatively, but less straight-for-wardly, the \T1/zi4/m/sl/ 10 paraPen \T1/ptm/m/n/10 ar-gu-ment to [][]\T1/zi4/m/sl/10 gam[][][] \T1/ptm/m /n/10 can be used: Underfull \hbox (badness 10000) in paragraph at lines 9825--9828 \T1/ptm/m/n/10 see [][]\T1/zi4/m/sl/10 gam.models[][][]\T1/ptm/m/n/10 . If smoo th-ing pa-ram-e-ter es-ti-ma-tion is by ML or REML (e.g. [2848] [2849] Underfull \hbox (badness 10000) in paragraph at lines 9920--9923 []\T1/ptm/m/n/10 the type of resid-u-als wanted. Usu-ally one of \T1/zi4/m/sl/1 0 "deviance"\T1/ptm/m/n/10 , [2850] [2851] [2852] [2853] [2854] [2855] [2856] [2857] [2858] [2859] Underfull \vbox (badness 10000) has occurred while \output is active [2860] Underfull \hbox (badness 3861) in paragraph at lines 10548--10551 []\T1/ptm/m/n/10 INTERNAL rou-tine to ap-ply ini-tial Sl re-parameterization to model ma-trix X, or, if [2861] [2862] Underfull \hbox (badness 5681) in paragraph at lines 10654--10659 \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 b.orig = D*b.repara \T1/ptm/m/n/10 (where \T 1/zi4/m/sl/10 b.orig \T1/ptm/m/n/10 is the orig-i-nal pa-ram-e-ter vec-tor). Underfull \hbox (badness 2762) in paragraph at lines 10654--10659 \T1/ptm/m/n/10 If ma-trix then \T1/zi4/m/sl/10 X[,start:stop]%*%D \T1/ptm/m/n/1 0 is re-parametrization of \T1/zi4/m/sl/10 X[,start:stop]\T1/ptm/m/n/10 , and [2863] Underfull \hbox (badness 1975) in paragraph at lines 10760--10765 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [2864] [2865] Underfull \hbox (badness 1762) in paragraph at lines 10849--10861 \T1/ptm/m/n/10 plate re-gres-sion splines: see [][]\T1/zi4/m/sl/10 tprs[][][]\T 1/ptm/m/n/10 ); \T1/zi4/m/sl/10 ts.smooth.spec \T1/ptm/m/n/10 (thin plate re-gr es-sion splines with [2866] [2867] [2868] Underfull \hbox (badness 7667) in paragraph at lines 11061--11067 [][][]\T1/zi4/m/sl/10 gam[][][] \T1/ptm/m/n/10 can use adap-tive smooths of one or two vari-ables, spec-i-fied via terms like [2869] Underfull \hbox (badness 10000) in paragraph at lines 11102--11103 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2870] [2871] [2872] [2873] Underfull \vbox (badness 10000) has occurred while \output is active [2874] Underfull \hbox (badness 10000) in paragraph at lines 11379--11381 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2875] [2876] Underfull \hbox (badness 10000) in paragraph at lines 11507--11508 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2877] [2878] [2879] Underfull \hbox (badness 1436) in paragraph at lines 11645--11650 \T1/ptm/m/n/10 nest-ing of the smooth within the fac-tor. Note how-ever that: i ) \T1/zi4/m/sl/10 gamm \T1/ptm/m/n/10 only al-lows one [2880] [2881] Underfull \hbox (badness 10000) in paragraph at lines 11736--11737 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2882] [2883] [2884] [2885] [2886] [2887] Underfull \vbox (badness 10000) has occurred while \output is active [2888] [2889] [2890] Underfull \hbox (badness 10000) in paragraph at lines 12304--12310 []\T1/ptm/m/n/10 A smooth spec-i-fi-ca-tion ob-ject as pro-duced by a [2891] [2892] [2893] Underfull \vbox (badness 10000) has occurred while \output is active [2894] Underfull \vbox (badness 10000) has occurred while \output is active [2895] [2896] Underfull \hbox (badness 10000) in paragraph at lines 12647--12648 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2897] [2898] [2899] [2900] Underfull \hbox (badness 3895) in paragraph at lines 12908--12911 [][][]\T1/zi4/m/sl/10 gam[][][] \T1/ptm/m/n/10 can use isotropic smooths of any num-ber of vari-ables, spec-i-fied via terms like [2901] Underfull \hbox (badness 10000) in paragraph at lines 12953--12955 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2902] [2903] [2904] [2905] Underfull \hbox (badness 1371) in paragraph at lines 13170--13176 []\T1/zi4/m/sl/10 bs="ad" \T1/ptm/m/n/10 Uni-vari-ate and bi-vari-ate adap-tive smooths are avail-able (see Underfull \hbox (badness 10000) in paragraph at lines 13210--13214 [][][]\T1/zi4/m/sl/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 te[][][]\T1/p tm/m/n/10 , [][]\T1/zi4/m/sl/10 t2[][][] [][]tprs[][][]\T1/ptm/m/n/10 ,[][]\T1/ zi4/m/sl/10 Duchon.spline[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 cubic.regre ssion.spline[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/sl/10 p.spline[][][]\T1/ptm/m/n /10 , Underfull \hbox (badness 10000) in paragraph at lines 13210--13214 [][]\T1/zi4/m/sl/10 mrf[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 soap[][][]\T1 /ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Spherical.Spline[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/sl/10 adaptive.smooth[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 user.de fined.smooth[][][]\T1/ptm/m/n/10 , Overfull \hbox (46.8009pt too wide) in paragraph at lines 13210--13214 [][]\T1/zi4/m/sl/10 smooth.construct.re.smooth.spec[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/sl/10 smooth.construct.gp.smooth.spec[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4 /m/sl/10 factor.smooth.interaction[][][] [2906] [2907] [2908] Underfull \hbox (badness 2326) in paragraph at lines 13366--13373 []\T1/ptm/m/n/10 These wrap-per func-tions ex-ist to al-low smooths spec-i-fied us-ing [][]\T1/zi4/m/sl/10 smooth.construct[][][] \T1/ptm/m/n/10 and [2909] Underfull \hbox (badness 2158) in paragraph at lines 13451--13451 []\T1/ptm/m/it/10 Extract smooth-ing pa-ram-e-ter es-ti-ma-tor co-vari-ance ma- trix from [2910] [2911] [2912] [2913] [2914] [2915] [2916] [2917] [2918] [2919] [2920] [2921] [2922] [2923] [2924] [2925] [2926] [2927] [2928] Underfull \hbox (badness 10000) in paragraph at lines 14616--14624 []\T1/ptm/m/n/10 Suppose that \T1/zi4/m/sl/10 m=1 \T1/ptm/m/n/10 and you fill a n ar-ray us-ing code like Underfull \hbox (badness 10000) in paragraph at lines 14616--14624 \T1/zi4/m/sl/10 for(i in 1:K) for(j in i:K) for(k in j:K) for(l in k:K) [2929] [2930] [2931] [2932] [2933] [2934] [2935] Underfull \hbox (badness 1796) in paragraph at lines 14999--15002 []\T1/ptm/m/n/10 other op-tions to pass on to [][]\T1/zi4/m/sl/10 persp[][][]\T 1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 image[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/ sl/10 contour[][][]\T1/ptm/m/n/10 . In par-tic-u-lar [2936] [2937] [2938] [2939] [2940] [2941]) (./nlme-pkg.tex [2942] Chapter 25. [2943] [2944] [2945] [2946] [2947] [2948] [2949] [2950] [2951] [2952] [2953] [2954] [2955] [2956] [2957] [2958] [2959] [2960] [2961] [2962] [2963] [2964] [2965] [2966] [2967] [2968] [2969] [2970] [2971] [2972] Underfull \hbox (badness 2875) in paragraph at lines 1994--2000 []\T1/ptm/m/n/10 an op-tional log-i-cal value or one-sided for-mula, in-di-cat- ing a co-vari-ate Underfull \hbox (badness 1466) in paragraph at lines 1994--2000 \T1/ptm/m/n/10 that is in-ner to the \T1/zi4/m/sl/10 displayLevel \T1/ptm/m/n/1 0 group-ing fac-tor. If equal to \T1/zi4/m/sl/10 TRUE\T1/ptm/m/n/10 , [2973] [2974] [2975] [2976] Underfull \hbox (badness 10000) in paragraph at lines 2255--2261 [][][]\T1/zi4/m/sl/10 ACF.lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 corARMA [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 corClasses[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/sl/10 Dim.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Initi alize.corStruct[][][]\T1/ptm/m/n/10 , [2977] [2978] [2979] [2980] [2981] [2982] [2983] [2984] [2985] [2986] [2987] [2988] [2989] [2990] [2991] [2992] [2993] [2994] [2995] [2996] [2997] [2998] [2999] [3000] [3001] [3002] [3003] [3004] [3005] [3006] [3007] [3008] [3009] Underfull \hbox (badness 1067) in paragraph at lines 4413--4418 \T1/ptm/m/n/10 ma-trix), \T1/zi4/m/sl/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues ), and \T1/zi4/m/sl/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to [3010] [3011] [3012] [3013] [3014] [3015] [3016] [3017] [3018] [3019] [3020] [3021] Underfull \hbox (badness 10000) in paragraph at lines 5159--5163 [][][]\T1/zi4/m/sl/10 getCovariate.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/ m/sl/10 getCovariate.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getCo variate.varFunc[][][]\T1/ptm/m/n/10 , [3022] [3023] [3024] [3025] [3026] [3027] [3028] Underfull \hbox (badness 10000) in paragraph at lines 5591--5594 [][][]\T1/zi4/m/sl/10 getGroupsFormula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 getGroups.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getGroups.gls[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getGroups.lmList[][][]\T1/ptm/m/n/10 , [3029] [3030] [3031] [3032] [3033] [3034] [3035] Underfull \hbox (badness 10000) in paragraph at lines 5972--5977 [][][]\T1/zi4/m/sl/10 getGroupsFormula.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/ sl/10 getGroupsFormula.lmList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 getGrou psFormula.lme[][][]\T1/ptm/m/n/10 , [3036] [3037] [3038] [3039] Underfull \hbox (badness 1490) in paragraph at lines 6242--6253 [][][]\T1/zi4/m/sl/10 corClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 glsC ontrol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 glsObject[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot. gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 predict.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 qqnorm.gls[][][]\T1/ptm/m/n/10 , [3040] Underfull \hbox (badness 10000) in paragraph at lines 6306--6308 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3041] [3042] [3043] [3044] [3045] [3046] Underfull \hbox (badness 10000) in paragraph at lines 6720--6722 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3047] [3048] [3049] [3050] Underfull \hbox (badness 10000) in paragraph at lines 6993--7000 [][][]\T1/zi4/m/sl/10 formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gapply[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 gsummary[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/sl/10 lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.nffGroupedData [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.nfnGroupedData[][][]\T1/ptm/m/n /10 , [3051] [3052] [3053] [3054] Underfull \hbox (badness 10000) in paragraph at lines 7255--7260 [][][]\T1/zi4/m/sl/10 Initialize.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/ sl/10 Initialize.lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Initialize .glsStruct[][][]\T1/ptm/m/n/10 , [3055] [3056] [3057] [3058] [3059] [3060] [3061] [3062] [3063] [3064] [3065] [3066] Underfull \hbox (badness 1642) in paragraph at lines 8037--8059 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a one-sided for-mula o f the form [3067] [3068] Underfull \hbox (badness 1642) in paragraph at lines 8209--8231 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a one-sided for-mula o f the form [3069] [3070] [3071] [3072] [3073] Underfull \hbox (badness 10000) in paragraph at lines 8520--8522 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3074]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.sig ma}) has been already used, duplicate ignored \relax l.8565 \aliasA{sigma}{lmeObject}{sigma} [3075] [3076] [3077] [3078] Underfull \hbox (badness 10000) in paragraph at lines 8795--8802 [][][]\T1/zi4/m/sl/10 lm[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 lme.lmList[] [][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 plot.lmList[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/sl/10 pooledSD[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 predict.lmLi st[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 residuals.lmList[][][]\T1/ptm/m/n/ 10 , [3079] [3080] [3081] [3082] [3083] [3084] [3085] [3086] Underfull \hbox (badness 10000) in paragraph at lines 9317--9324 [][][]\T1/zi4/m/sl/10 lme[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/sl/10 gls[][][]\T1 /ptm/m/n/10 , [][]\T1/zi4/m/sl/10 logLik.corStruct[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/sl/10 logLik.glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 logLik .lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 logLik.lmList[][][]\T1/ptm /m/n/10 , [3087] [3088] [3089] [3090] [3091]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.Matrix}) has been already used, duplicate ignored \relax l.9679 ...rA{Matrix}{Assign Matrix Values}{Matrix} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.Matrix.1}) has been already used, dupl icate ignored \relax l.9679 ...rA{Matrix}{Assign Matrix Values}{Matrix} [3092] [3093] [3094] [3095] [3096] [3097] [3098] [3099] [3100] [3101] [3102] [3103] Underfull \hbox (badness 1596) in paragraph at lines 10452--10478 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a two-sided for-mula o f the form [3104] [3105] Underfull \hbox (badness 1490) in paragraph at lines 10590--10596 [][][]\T1/zi4/m/sl/10 nlmeControl[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 nlm e.nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 nlmeObject[][][]\T1/ptm/m/n /10 , [][]\T1/zi4/m/sl/10 nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 nlm eStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 pdClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 reStruct[][][]\T1/ptm/m/n/10 , [3106] [3107] [3108] [3109] Underfull \hbox (badness 10000) in paragraph at lines 10812--10816 []\T1/ptm/m/n/10 a log-i-cal value passed as the \T1/zi4/m/sl/10 trace \T1/ptm/ m/n/10 to Underfull \hbox (badness 10000) in paragraph at lines 10831--10833 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3110] [3111] [3112] [3113] [3114] [3115] [3116] [3117] [3118] [3119] [3120] [3121] [3122] [3123] [3124] [3125] [3126] [3127] [3128] [3129] [3130] [3131] [3132] [3133] [3134] [3135] [3136] [3137] [3138] [3139] [3140] [3141] [3142] [3143] [3144] [3145] [3146] [3147] [3148] [3149] [3150] [3151] Underfull \hbox (badness 1286) in paragraph at lines 13728--13735 []\T1/ptm/m/n/10 an op-tional log-i-cal func-tion or func-tion. If \T1/zi4/m/sl /10 TRUE \T1/ptm/m/n/10 and ei-ther \T1/zi4/m/sl/10 inner \T1/ptm/m/n/10 or [3152] [3153] [3154] [3155] [3156] [3157] [3158] [3159] Underfull \hbox (badness 1215) in paragraph at lines 14256--14258 []\T1/ptm/m/n/10 an op-tional nu-meric vec-tor with the lim-its for the y-axis. De-faults to [3160] [3161] [3162] [3163] [3164] [3165] [3166] [3167] [3168] [3169] [3170] [3171] [3172]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.random.effects}) has been already used, duplicate ignored \relax l.15153 ...Extract Random Effects}{random.effects} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.random.effects.1}) has been already us ed, duplicate ignored \relax l.15153 ...Extract Random Effects}{random.effects} [3173] [3174] [3175] [3176] [3177] [3178] [3179] [3180] [3181] [3182] [3183] Underfull \hbox (badness 1067) in paragraph at lines 15864--15869 \T1/ptm/m/n/10 ma-trix), \T1/zi4/m/sl/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues ), and \T1/zi4/m/sl/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to [3184] [3185] [3186] [3187] Underfull \hbox (badness 1448) in paragraph at lines 16107--16116 \T1/ptm/m/n/10 Op-tions in-clude \T1/zi4/m/sl/10 "response" \T1/ptm/m/n/10 for the "raw" resid-u-als (ob-served - fit-ted), [3188] [3189] Underfull \hbox (badness 10000) in paragraph at lines 16235--16253 []\T1/ptm/m/n/10 any of the fol-low-ing: (i) a one-sided for-mula of the form Underfull \hbox (badness 1721) in paragraph at lines 16235--16253 \T1/zi4/m/sl/10 ~x1+...+xn | g1/.../gm\T1/ptm/m/n/10 , with \T1/zi4/m/sl/10 x1+ ...+xn \T1/ptm/m/n/10 spec-i-fy-ing the model for [3190] [3191] [3192] [3193] [3194] [3195] [3196] [3197] Underfull \hbox (badness 1728) in paragraph at lines 16812--16815 []\T1/ptm/m/n/10 an op-tional log-i-cal value used to con-trol the amount of ou t-put in the [3198] [3199] [3200] [3201] [3202] Underfull \hbox (badness 10000) in paragraph at lines 17147--17156 []\T1/ptm/m/n/10 an op-tional char-ac-ter string with a de-scrip-tion of the \T 1/zi4/m/sl/10 pdMat Underfull \hbox (badness 6725) in paragraph at lines 17147--17156 \T1/ptm/m/n/10 class. De-fault de-pends on the method func-tion: \T1/zi4/m/sl/1 0 "Blocked" \T1/ptm/m/n/10 for Underfull \hbox (badness 10000) in paragraph at lines 17147--17156 \T1/zi4/m/sl/10 pdBlocked\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "Compound Symmetry" \ T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdCompSymm\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "D iagonal" Underfull \hbox (badness 10000) in paragraph at lines 17147--17156 \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdDiag\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "Mult iple of an Identity" \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdIdent\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 17147--17156 \T1/zi4/m/sl/10 "General Positive-Definite, Natural Parametrization" Underfull \hbox (badness 10000) in paragraph at lines 17147--17156 \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdNatural\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "G eneral Positive-Definite" \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 pdSymm\T1/ptm/m/n/ 10 , and [3203] Underfull \hbox (badness 10000) in paragraph at lines 17211--17219 \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 varComb\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "Con stant plus power of covariate" \T1/ptm/m/n/10 for Underfull \hbox (badness 3815) in paragraph at lines 17211--17219 \T1/zi4/m/sl/10 "Different standard deviations per stratum" \T1/ptm/m/n/10 for \T1/zi4/m/sl/10 varIdent\T1/ptm/m/n/10 , [3204] [3205] [3206] [3207] [3208] [3209] [3210] [3211] [3212] [3213] [3214] Underfull \hbox (badness 10000) in paragraph at lines 17993--18003 [][][]\T1/zi4/m/sl/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 Variogram.corGaus[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.corLin[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.corRatio[][][]\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 17993--18003 [][]\T1/zi4/m/sl/10 Variogram.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl /10 Variogram.corSpher[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.defa ult[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.gls[][][]\T1/ptm/m/n/10 , [3215] [3216] [3217] [3218] [3219] Underfull \hbox (badness 5036) in paragraph at lines 18317--18326 [][][]\T1/zi4/m/sl/10 corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Vari ogram[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.default[][][]\T1/ptm/ m/n/10 , [][]\T1/zi4/m/sl/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4 /m/sl/10 Variogram.corGaus[][][]\T1/ptm/m/n/10 , [3220] [3221] [3222] [3223] [3224] [3225] [3226] [3227] [3228] [3229] [3230] [3231] [3232]) (./nnet-pkg.tex Chapter 26. pdfTeX warning (ext4): destination with the same identifier (name{Rfn.multinom} ) has been already used, duplicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.multinom.1}) has been already used, du plicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} [3233] Underfull \hbox (badness 10000) in paragraph at lines 78--87 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm [3234] [3235] [3236] [3237] [3238] [3239] [3240]) (./rpart-pkg.tex Chapter 27. [3241] [3242] [3243] [3244] [3245] [3246] [3247] [3248] [3249] [3250] [3251] [3252] [3253] [3254] [3255] [3256] [3257] [3258] [3259] [3260] [3261] [3262] [3263] [3264] [3265] [3266] [3267] [3268] [3269]) (./spatial-pkg.tex [3270] Chapter 28. [3271] [3272] [3273] [3274] [3275] [3276] Underfull \hbox (badness 10000) in paragraph at lines 423--427 [3277] [3278] [3279] [3280] [3281] [3282] [3283] [3284] [3285] [3286] [3287] [3288] [3289]) (./survival-pkg.tex [3290] Chapter 29. [3291] [3292] [3293] [3294]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.aml}) has been already used, duplicate ignored \relax l.319 ... Myelogenous Leukemia survival data}{aml} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.aml.1}) has been already used, duplica te ignored \relax l.319 ... Myelogenous Leukemia survival data}{aml} [3295] [3296] [3297] [3298] [3299] Underfull \vbox (badness 10000) has occurred while \output is active [3300] [3301] [3302] [3303] [3304] [3305] Underfull \hbox (badness 1097) in paragraph at lines 968--970 []\T1/ptm/m/n/10 F.J. Anscombe (1949). Trans-for-ma-tions of Pois-son, bi-no-mi al and negative-binomial data. [3306] [3307] [3308]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colon}) has been already used, duplicate ignored \relax l.1171 ...erapy for Stage B/C colon cancer}{colon} Underfull \vbox (badness 2698) has occurred while \output is active [3309] [3310] [3311] [3312] [3313] [3314] [3315] [3316] [3317] [3318] [3319] [3320] [3321] [3322] [3323] [3324] [3325] [3326] [3327] Underfull \hbox (badness 1389) in paragraph at lines 2567--2569 []\T1/ptm/m/n/10 Often used to add the ex-pected sur-vival curve(s) to a Kaplan -Meier plot gen-er-ated with [3328] Underfull \hbox (badness 1048) in paragraph at lines 2621--2623 []\T1/ptm/m/n/10 this pa-ram-e-ter is no longer nec-es-sary and is ig-nored. Se e the note in [3329] [3330] [3331] [3332] [3333] [3334] [3335] [3336] [3337] [3338] [3339] [3340] [3341] Underfull \vbox (badness 10000) has occurred while \output is active [3342] [3343] [3344] [3345] [3346] [3347] [3348] [3349] [3350] [3351] Underfull \hbox (badness 5274) in paragraph at lines 4163--4165 []\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/sl/10 "summary.survfit"\T1/ptm/m /n/10 , which is the re-sult of the [3352] [3353] [3354] [3355] [3356] [3357] Underfull \hbox (badness 1540) in paragraph at lines 4517--4520 []\T1/ptm/m/n/10 an ar-ray con-tain-ing the ex-pected num-ber of events (or per -son years if [3358] [3359] [3360] [3361] Underfull \vbox (badness 10000) has occurred while \output is active [3362] [3363] [3364] Underfull \hbox (badness 1281) in paragraph at lines 5029--5034 []\T1/ptm/m/n/10 type of resid-u-als, with choices of \T1/zi4/m/sl/10 "response "\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "deviance"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "d fbeta"\T1/ptm/m/n/10 , [3365] [3366] [3367] [3368] [3369] [3370] [3371] [3372] [3373] [3374] [3375] [3376] [3377] [3378] [3379] [3380] [3381] [3382] Underfull \hbox (badness 10000) in paragraph at lines 6255--6264 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for other sur-vival mod-els, of the form [3383] [3384] Underfull \hbox (badness 1038) in paragraph at lines 6407--6413 \T1/ptm/m/n/10 op-tion does not cre-ate a curve, rather it re-trieves the pre-d icted sur-vival [3385] [3386] [3387] [3388] [3389] Underfull \hbox (badness 10000) in paragraph at lines 6770--6775 [][][]\T1/zi4/m/sl/10 survfit.formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 survfit.coxph[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 survfit.object[][][]\T 1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 print.survfit[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/sl/10 plot.survfit[][][]\T1/ptm/m/n/10 , [3390] [3391] [3392] [3393] [3394] [3395] [3396] [3397] [3398] [3399] [3400] Underfull \hbox (badness 1354) in paragraph at lines 7622--7626 []\T1/ptm/m/n/10 survival times, for time de-pen-dent pre-dic-tion. It gives th e time range [3401] [3402] [3403] [3404] [3405] [3406] [3407] [3408] [3409] [3410] [3411] [3412] [3413] [3414] [3415] [3416] Underfull \vbox (badness 10000) has occurred while \output is active [3417] [3418]) (./fullrefman.ind [3419] [3420] [3421] [3422] [3423] [3424] [3425] [3426] [3427] [3428] [3429] [3430] [3431] [3432] [3433] [3434] [3435] [3436] [3437] [3438] [3439] Overfull \hbox (8.3567pt too wide) in paragraph at lines 2212--2214 []| \T1/zi4/m/it/10 smooth.construct.tensor.smooth.spec\T1/ptm/m/n/10 , [3440] [3441] [3442] [3443] [3444] Overfull \hbox (8.3567pt too wide) in paragraph at lines 2771--2773 []| \T1/zi4/m/it/10 smooth.construct.tensor.smooth.spec\T1/ptm/m/n/10 , [3445] [3446] [3447] [3448] [3449] [3450] [3451] [3452] [3453] Overfull \hbox (20.8567pt too wide) in paragraph at lines 3881--3883 []\T1/zi4/m/it/10 [,CsparseMatrix,index,index,logical-method Overfull \hbox (30.8567pt too wide) in paragraph at lines 3883--3885 []\T1/zi4/m/it/10 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coerce,denseMatrix,sparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7332--7334 []\T1/zi4/m/it/10 coerce,denseMatrix,symmetricMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 7334--7336 []\T1/zi4/m/it/10 coerce,denseMatrix,TsparseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 7372--7374 []\T1/zi4/m/it/10 coerce,dgeMatrix,triangularMatrix-method [3474] Overfull \hbox (5.8567pt too wide) in paragraph at lines 7392--7394 []\T1/zi4/m/it/10 coerce,dgTMatrix,symmetricMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 7394--7396 []\T1/zi4/m/it/10 coerce,dgTMatrix,triangularMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 7396--7398 []\T1/zi4/m/it/10 coerce,diagonalMatrix,denseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 7398--7400 []\T1/zi4/m/it/10 coerce,diagonalMatrix,generalMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 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Transcript written on fullrefman.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-FAQ.texi This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2018) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.5.0/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2018-03-10.14]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-3.5.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/usr/share/texmf/tex/texinfo/txi-en.tex) [1{/usr/share/texlive/texmf-dist/font s/map/pdftex/updmap/pdftex.map}] [-1] Chapter 1 Cross reference values unknown; you must run TeX again. [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] [18] Chapter 4 [19] [20] Chapter 5 [21] [22] [23] [24] [25] Chapter 6 [26] [27] Chapter 7 [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] Writing index file R-FAQ.fn [40] [41] [42] Underfull \hbox (badness 10000) in paragraph at lines 3389--3397 @texttt download.file()[] @textrm func-tion), a down-load method is cho-sen bas ed on the [43] Chapter 8 [44] Chapter 9 [45] [46] Chapter 10 [47] [48] [49] ) (see the transcript file for additional information) Output written on R-FAQ.pdf (51 pages, 366392 bytes). Transcript written on R-FAQ.log. This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2018) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.5.0/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2018-03-10.14]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-3.5.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/usr/share/texmf/tex/texinfo/txi-en.tex) [1{/usr/share/texlive/texmf-dist/font s/map/pdftex/updmap/pdftex.map}] (/builddir/build/BUILD/R-3.5.0/doc/manual/R-FAQ.toc [-1] [-2]) [-3] (/builddir/build/BUILD/R-3.5.0/doc/manual/R-FAQ.toc) (/builddir/build/BUILD/R-3.5.0/doc/manual/R-FAQ.toc) Chapter 1 (/builddir/build/BUILD/R-3.5.0/doc/manual/R-FAQ.aux) [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] [18] Chapter 4 [19] [20] Chapter 5 [21] [22] [23] [24] [25] Chapter 6 [26] [27] Chapter 7 [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] Writing index file R-FAQ.fn [40] [41] [42] Underfull \hbox (badness 10000) in paragraph at lines 3389--3397 @texttt download.file()[] @textrm func-tion), a down-load method is cho-sen bas ed on the [43] Chapter 8 [44] Chapter 9 [45] [46] Chapter 10 [47] [48] [49] ) (see the transcript file for additional information) Output written on R-FAQ.pdf (53 pages, 382720 bytes). Transcript written on R-FAQ.log. This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2018) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.5.0/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2018-03-10.14]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-3.5.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/usr/share/texmf/tex/texinfo/txi-en.tex) [1{/usr/share/texlive/texmf-dist/font s/map/pdftex/updmap/pdftex.map}] (/builddir/build/BUILD/R-3.5.0/doc/manual/R-FAQ.toc [-1] [-2]) [-3] (/builddir/build/BUILD/R-3.5.0/doc/manual/R-FAQ.toc) (/builddir/build/BUILD/R-3.5.0/doc/manual/R-FAQ.toc) Chapter 1 (/builddir/build/BUILD/R-3.5.0/doc/manual/R-FAQ.aux) [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] [18] Chapter 4 [19] [20] Chapter 5 [21] [22] [23] [24] [25] Chapter 6 [26] [27] Chapter 7 [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] Writing index file R-FAQ.fn [40] [41] [42] Underfull \hbox (badness 10000) in paragraph at lines 3389--3397 @texttt download.file()[] @textrm func-tion), a down-load method is cho-sen bas ed on the [43] Chapter 8 [44] Chapter 9 [45] [46] Chapter 10 [47] [48] [49] ) (see the transcript file for additional information) Output written on R-FAQ.pdf (53 pages, 382723 bytes). Transcript written on R-FAQ.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-admin.texi This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2018) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.5.0/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2018-03-10.14]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-3.5.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-admin.vr (/builddir/build/BUILD/R-3.5.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-3.5.0/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-admin.cp Writing index file R-admin.en [1] Chapter 2 [2] Cross reference values unknown; you must run TeX again. [3] [4] [5] [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] Underfull \hbox (badness 7685) in paragraph at lines 1289--1293 []@textrm or per-haps bet-ter, set the en-vi-ron-ment vari-able @texttt TAR_OP TIONS[] @textrm to the value [14] [15] Underfull \hbox (badness 10000) in paragraph at lines 1506--1510 []@textrm Parallel check-ing of pack-age sources (part of @texttt make check-de vel[] @textrm and @texttt make [16] [17] Chapter 4 [18] [19] Underfull \hbox (badness 10000) in paragraph at lines 1884--1896 @texttt capitan.fw.pkg[]@textrm , @texttt org.r-project.R.el-capitan.GUI.pkg[]@ textrm , @texttt org.r-project.x86_ [20] Chapter 5 [21] Chapter 6 [22] [23] [24] [25] [26] [27] [28] [29] [30] Chapter 7 [31] [32] [33] Chapter 8 [34] Chapter 9 [35] [36] Appendix A [37] [38] [39] Overfull \hbox (27.8098pt too wide) in paragraph at lines 3352--3352 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit -- disable-cpp[] [40] [41] [42] [43] [44] [45] [46] [47] Appendix B [48] [49] [50] [51] [52] [53] Appendix C [54] [55] [56] [57] [58] [59] [60] Overfull \hbox (56.55324pt too wide) in paragraph at lines 5098--5098 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr /lib/pkgconfig \[] Overfull \hbox (85.29668pt too wide) in paragraph at lines 5136--5136 []@texttt export PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconf ig:/usr/lib/pkgconfig[] [61] [62] Overfull \hbox (33.55849pt too wide) in paragraph at lines 5319--5319 []@texttt JAVAH=/Library/Java/JavaVirtualMachines/jdk1.8.0_161.jdk/Contents/Ho me/bin/javah[] [63] [64] [65] [66] [67] [68] [69] Appendix D [70] [71] [72] (Function and variable index) [73] No file R-admin.vrs. (Concept index) [74] No file R-admin.cps. (Environment variable index) [75] No file R-admin.ens. [76] ) (see the transcript file for additional information) Output written on R-admin.pdf (79 pages, 478404 bytes). Transcript written on R-admin.log. This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2018) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.5.0/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2018-03-10.14]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-3.5.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-admin.vr (/builddir/build/BUILD/R-3.5.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-3.5.0/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-3.5.0/doc/manual/R-admin.toc [-1] [-2]) [-3] (/builddir/build/BUILD/R-3.5.0/doc/manual/R-admin.toc) (/builddir/build/BUILD/R-3.5.0/doc/manual/R-admin.toc) Chapter 1 (/builddir/build/BUILD/R-3.5.0/doc/manual/R-admin.aux) Writing index file R-admin.cp Writing index file R-admin.en [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] Underfull \hbox (badness 7685) in paragraph at lines 1289--1293 []@textrm or per-haps bet-ter, set the en-vi-ron-ment vari-able @texttt TAR_OP TIONS[] @textrm to the value [14] [15] Underfull \hbox (badness 10000) in paragraph at lines 1506--1510 []@textrm Parallel check-ing of pack-age sources (part of @texttt make check-de vel[] @textrm and @texttt make [16] [17] Chapter 4 [18] [19] Underfull \hbox (badness 10000) in paragraph at lines 1884--1896 @texttt capitan.fw.pkg[]@textrm , @texttt org.r-project.R.el-capitan.GUI.pkg[]@ textrm , @texttt org.r-project.x86_ [20] Chapter 5 [21] Chapter 6 [22] [23] [24] [25] [26] [27] [28] [29] [30] Chapter 7 [31] [32] [33] Chapter 8 [34] Chapter 9 [35] [36] Appendix A [37] [38] [39] Overfull \hbox (27.8098pt too wide) in paragraph at lines 3352--3352 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit -- disable-cpp[] [40] [41] [42] [43] [44] [45] [46] [47] Appendix B [48] [49] [50] [51] [52] [53] Appendix C [54] [55] [56] [57] [58] [59] [60] Overfull \hbox (56.55324pt too wide) in paragraph at lines 5098--5098 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr /lib/pkgconfig \[] Overfull \hbox (85.29668pt too wide) in paragraph at lines 5136--5136 []@texttt export PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconf ig:/usr/lib/pkgconfig[] [61] [62] Overfull \hbox (33.55849pt too wide) in paragraph at lines 5319--5319 []@texttt JAVAH=/Library/Java/JavaVirtualMachines/jdk1.8.0_161.jdk/Contents/Ho me/bin/javah[] [63] [64] [65] [66] [67] [68] [69] Appendix D [70] [71] [72] (Function and variable index) [73] (Concept index) [74] (Environment variable index) [75] [76] ) (see the transcript file for additional information) Output written on R-admin.pdf (81 pages, 524544 bytes). Transcript written on R-admin.log. This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2018) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.5.0/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2018-03-10.14]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-3.5.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-admin.vr (/builddir/build/BUILD/R-3.5.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-3.5.0/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-3.5.0/doc/manual/R-admin.toc [-1] [-2]) [-3] (/builddir/build/BUILD/R-3.5.0/doc/manual/R-admin.toc) (/builddir/build/BUILD/R-3.5.0/doc/manual/R-admin.toc) Chapter 1 (/builddir/build/BUILD/R-3.5.0/doc/manual/R-admin.aux) Writing index file R-admin.cp Writing index file R-admin.en [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] Underfull \hbox (badness 7685) in paragraph at lines 1289--1293 []@textrm or per-haps bet-ter, set the en-vi-ron-ment vari-able @texttt TAR_OP TIONS[] @textrm to the value [14] [15] Underfull \hbox (badness 10000) in paragraph at lines 1506--1510 []@textrm Parallel check-ing of pack-age sources (part of @texttt make check-de vel[] @textrm and @texttt make [16] [17] Chapter 4 [18] [19] Underfull \hbox (badness 10000) in paragraph at lines 1884--1896 @texttt capitan.fw.pkg[]@textrm , @texttt org.r-project.R.el-capitan.GUI.pkg[]@ textrm , @texttt org.r-project.x86_ [20] Chapter 5 [21] Chapter 6 [22] [23] [24] [25] [26] [27] [28] [29] [30] Chapter 7 [31] [32] [33] Chapter 8 [34] Chapter 9 [35] [36] Appendix A [37] [38] [39] Overfull \hbox (27.8098pt too wide) in paragraph at lines 3352--3352 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit -- disable-cpp[] [40] [41] [42] [43] [44] [45] [46] [47] Appendix B [48] [49] [50] [51] [52] [53] Appendix C [54] [55] [56] [57] [58] [59] [60] Overfull \hbox (56.55324pt too wide) in paragraph at lines 5098--5098 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr /lib/pkgconfig \[] Overfull \hbox (85.29668pt too wide) in paragraph at lines 5136--5136 []@texttt export PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconf ig:/usr/lib/pkgconfig[] [61] [62] Overfull \hbox (33.55849pt too wide) in paragraph at lines 5319--5319 []@texttt JAVAH=/Library/Java/JavaVirtualMachines/jdk1.8.0_161.jdk/Contents/Ho me/bin/javah[] [63] [64] [65] [66] [67] [68] [69] Appendix D [70] [71] [72] (Function and variable index) [73] (Concept index) [74] (Environment variable index) [75] [76] ) (see the transcript file for additional information) Output written on R-admin.pdf (81 pages, 524537 bytes). Transcript written on R-admin.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-data.texi This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2018) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.5.0/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2018-03-10.14]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-3.5.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-data.vr (/builddir/build/BUILD/R-3.5.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-3.5.0/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Acknowledgements) Underfull \hbox (badness 10000) in paragraph at lines 87--87 [][]@textbf DBI Underfull \hbox (badness 10000) in paragraph at lines 87--87 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 87--87 @texttt org / Overfull \hbox (4.50087pt too wide) in paragraph at lines 87--87 @texttt package=DBI[]@textrm )[][]| Overfull \hbox (8.53186pt too wide) in paragraph at lines 88--88 [][]@textbf dataframes2xls Underfull \hbox (badness 10000) in paragraph at lines 88--88 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 88--88 @texttt org / Overfull \hbox (67.73643pt too wide) in paragraph at lines 88--88 @texttt package=dataframes2xls[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 89--89 [][]@textbf foreign Underfull \hbox (badness 10000) in paragraph at lines 89--89 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 89--89 @texttt org / Overfull \hbox (27.49562pt too wide) in paragraph at lines 89--89 @texttt package=foreign[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 90--90 [][]@textbf gdata Underfull \hbox (badness 10000) in paragraph at lines 90--90 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 90--90 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 90--90 @texttt package=gdata[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 91--91 [][]@textbf ncdf4 Underfull \hbox (badness 10000) in paragraph at lines 91--91 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 91--91 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 91--91 @texttt package=ncdf4[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 92--92 [][]@textbf rJava Underfull \hbox (badness 10000) in paragraph at lines 92--92 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 92--92 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 92--92 @texttt package=rJava[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 93--93 [][]@textbf RJDBC Underfull \hbox (badness 10000) in paragraph at lines 93--93 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 93--93 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 93--93 @texttt package=RJDBC[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 94--94 [][]@textbf RMySQL Underfull \hbox (badness 10000) in paragraph at lines 94--94 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 94--94 @texttt org / Overfull \hbox (21.74693pt too wide) in paragraph at lines 94--94 @texttt package=RMySQL[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 95--95 [][]@textbf RNetCDF Underfull \hbox (badness 10000) in paragraph at lines 95--95 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 95--95 @texttt org / Overfull \hbox (27.49562pt too wide) in paragraph at lines 95--95 @texttt package=RNetCDF[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 96--96 [][]@textbf RODBC Underfull \hbox (badness 10000) in paragraph at lines 96--96 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 96--96 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 96--96 @texttt package=RODBC[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 97--97 [][]@textbf ROracle Underfull \hbox (badness 10000) in paragraph at lines 97--97 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 97--97 @texttt org / Overfull \hbox (27.49562pt too wide) in paragraph at lines 97--97 @texttt package=ROracle[]@textrm )[][]| Overfull \hbox (2.70708pt too wide) in paragraph at lines 98--98 [][]@textbf RPostgreSQL Underfull \hbox (badness 10000) in paragraph at lines 98--98 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 98--98 @texttt org / Overfull \hbox (50.49037pt too wide) in paragraph at lines 98--98 @texttt package=RPostgreSQL[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 101--101 [][]@textbf RSQLite Underfull \hbox (badness 10000) in paragraph at lines 101--101 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 101--101 @texttt org / Overfull \hbox (27.49562pt too wide) in paragraph at lines 101--101 @texttt package=RSQLite[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 103--103 [][]@textbf WriteXLS Underfull \hbox (badness 10000) in paragraph at lines 103--103 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 103--103 @texttt org / Overfull \hbox (33.24431pt too wide) in paragraph at lines 103--103 @texttt package=WriteXLS[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 104--104 [][]@textbf XLConnect Underfull \hbox (badness 10000) in paragraph at lines 104--104 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 104--104 @texttt org / Overfull \hbox (38.993pt too wide) in paragraph at lines 104--104 @texttt package=XLConnect[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 105--105 [][]@textbf XML Underfull \hbox (badness 10000) in paragraph at lines 105--105 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 105--105 @texttt org / Overfull \hbox (4.50087pt too wide) in paragraph at lines 105--105 @texttt package=XML[]@textrm )[][]| [1] [2] Chapter 1 [3] Writing index file R-data.cp Cross reference values unknown; you must run TeX again. [4] [5] [6] Chapter 2 [7] [8] [9] [10] [11] [12] Chapter 3 [13] [14] Chapter 4 [15] [16] [17] [18] [19] [20] Chapter 5 [21] Chapter 6 [22] Chapter 7 [23] [24] [25] [26] Chapter 8 [27] Chapter 9 [28] Appendix A [29] (Function and variable index) [30] No file R-data.vrs. (Concept index) [31] No file R-data.cps. [32] ) (see the transcript file for additional information) Output written on R-data.pdf (35 pages, 270369 bytes). Transcript written on R-data.log. This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2018) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.5.0/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2018-03-10.14]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-3.5.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-data.vr (/builddir/build/BUILD/R-3.5.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-3.5.0/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-3.5.0/doc/manual/R-data.toc [-1]) [-2] (/builddir/build/BUILD/R-3.5.0/doc/manual/R-data.toc) (/builddir/build/BUILD/R-3.5.0/doc/manual/R-data.toc) (Acknowledgements) (/builddir/build/BUILD/R-3.5.0/doc/manual/R-data.aux) Underfull \hbox (badness 10000) in paragraph at lines 87--87 [][]@textbf DBI Underfull \hbox (badness 10000) in paragraph at lines 87--87 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 87--87 @texttt org / Overfull \hbox (4.50087pt too wide) in paragraph at lines 87--87 @texttt package=DBI[]@textrm )[][]| Overfull \hbox (8.53186pt too wide) in paragraph at lines 88--88 [][]@textbf dataframes2xls Underfull \hbox (badness 10000) in paragraph at lines 88--88 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 88--88 @texttt org / Overfull \hbox (67.73643pt too wide) in paragraph at lines 88--88 @texttt package=dataframes2xls[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 89--89 [][]@textbf foreign Underfull \hbox (badness 10000) in paragraph at lines 89--89 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 89--89 @texttt org / Overfull \hbox (27.49562pt too wide) in paragraph at lines 89--89 @texttt package=foreign[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 90--90 [][]@textbf gdata Underfull \hbox (badness 10000) in paragraph at lines 90--90 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 90--90 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 90--90 @texttt package=gdata[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 91--91 [][]@textbf ncdf4 Underfull \hbox (badness 10000) in paragraph at lines 91--91 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 91--91 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 91--91 @texttt package=ncdf4[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 92--92 [][]@textbf rJava Underfull \hbox (badness 10000) in paragraph at lines 92--92 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 92--92 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 92--92 @texttt package=rJava[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 93--93 [][]@textbf RJDBC Underfull \hbox (badness 10000) in paragraph at lines 93--93 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 93--93 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 93--93 @texttt package=RJDBC[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 94--94 [][]@textbf RMySQL Underfull \hbox (badness 10000) in paragraph at lines 94--94 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 94--94 @texttt org / Overfull \hbox (21.74693pt too wide) in paragraph at lines 94--94 @texttt package=RMySQL[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 95--95 [][]@textbf RNetCDF Underfull \hbox (badness 10000) in paragraph at lines 95--95 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 95--95 @texttt org / Overfull \hbox (27.49562pt too wide) in paragraph at lines 95--95 @texttt package=RNetCDF[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 96--96 [][]@textbf RODBC Underfull \hbox (badness 10000) in paragraph at lines 96--96 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 96--96 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 96--96 @texttt package=RODBC[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 97--97 [][]@textbf ROracle Underfull \hbox (badness 10000) in paragraph at lines 97--97 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 97--97 @texttt org / Overfull \hbox (27.49562pt too wide) in paragraph at lines 97--97 @texttt package=ROracle[]@textrm )[][]| Overfull \hbox (2.70708pt too wide) in paragraph at lines 98--98 [][]@textbf RPostgreSQL Underfull \hbox (badness 10000) in paragraph at lines 98--98 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 98--98 @texttt org / Overfull \hbox (50.49037pt too wide) in paragraph at lines 98--98 @texttt package=RPostgreSQL[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 101--101 [][]@textbf RSQLite Underfull \hbox (badness 10000) in paragraph at lines 101--101 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 101--101 @texttt org / Overfull \hbox (27.49562pt too wide) in paragraph at lines 101--101 @texttt package=RSQLite[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 103--103 [][]@textbf WriteXLS Underfull \hbox (badness 10000) in paragraph at lines 103--103 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 103--103 @texttt org / Overfull \hbox (33.24431pt too wide) in paragraph at lines 103--103 @texttt package=WriteXLS[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 104--104 [][]@textbf XLConnect Underfull \hbox (badness 10000) in paragraph at lines 104--104 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 104--104 @texttt org / Overfull \hbox (38.993pt too wide) in paragraph at lines 104--104 @texttt package=XLConnect[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 105--105 [][]@textbf XML Underfull \hbox (badness 10000) in paragraph at lines 105--105 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 105--105 @texttt org / Overfull \hbox (4.50087pt too wide) in paragraph at lines 105--105 @texttt package=XML[]@textrm )[][]| [1] [2] Chapter 1 [3] Writing index file R-data.cp [4] [5] [6] Chapter 2 [7] [8] [9] [10] [11] [12] Chapter 3 [13] [14] Chapter 4 [15] [16] [17] [18] [19] [20] Chapter 5 [21] Chapter 6 [22] Chapter 7 [23] [24] [25] [26] Chapter 8 [27] Chapter 9 [28] Appendix A [29] (Function and variable index) [30] [31] (Concept index) [32] [33] ) (see the transcript file for additional information) Output written on R-data.pdf (37 pages, 309915 bytes). Transcript written on R-data.log. This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2018) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.5.0/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2018-03-10.14]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-3.5.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-data.vr (/builddir/build/BUILD/R-3.5.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-3.5.0/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-3.5.0/doc/manual/R-data.toc [-1]) [-2] (/builddir/build/BUILD/R-3.5.0/doc/manual/R-data.toc) (/builddir/build/BUILD/R-3.5.0/doc/manual/R-data.toc) (Acknowledgements) (/builddir/build/BUILD/R-3.5.0/doc/manual/R-data.aux) Underfull \hbox (badness 10000) in paragraph at lines 87--87 [][]@textbf DBI Underfull \hbox (badness 10000) in paragraph at lines 87--87 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 87--87 @texttt org / Overfull \hbox (4.50087pt too wide) in paragraph at lines 87--87 @texttt package=DBI[]@textrm )[][]| Overfull \hbox (8.53186pt too wide) in paragraph at lines 88--88 [][]@textbf dataframes2xls Underfull \hbox (badness 10000) in paragraph at lines 88--88 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 88--88 @texttt org / Overfull \hbox (67.73643pt too wide) in paragraph at lines 88--88 @texttt package=dataframes2xls[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 89--89 [][]@textbf foreign Underfull \hbox (badness 10000) in paragraph at lines 89--89 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 89--89 @texttt org / Overfull \hbox (27.49562pt too wide) in paragraph at lines 89--89 @texttt package=foreign[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 90--90 [][]@textbf gdata Underfull \hbox (badness 10000) in paragraph at lines 90--90 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 90--90 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 90--90 @texttt package=gdata[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 91--91 [][]@textbf ncdf4 Underfull \hbox (badness 10000) in paragraph at lines 91--91 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 91--91 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 91--91 @texttt package=ncdf4[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 92--92 [][]@textbf rJava Underfull \hbox (badness 10000) in paragraph at lines 92--92 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 92--92 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 92--92 @texttt package=rJava[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 93--93 [][]@textbf RJDBC Underfull \hbox (badness 10000) in paragraph at lines 93--93 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 93--93 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 93--93 @texttt package=RJDBC[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 94--94 [][]@textbf RMySQL Underfull \hbox (badness 10000) in paragraph at lines 94--94 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 94--94 @texttt org / Overfull \hbox (21.74693pt too wide) in paragraph at lines 94--94 @texttt package=RMySQL[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 95--95 [][]@textbf RNetCDF Underfull \hbox (badness 10000) in paragraph at lines 95--95 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 95--95 @texttt org / Overfull \hbox (27.49562pt too wide) in paragraph at lines 95--95 @texttt package=RNetCDF[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 96--96 [][]@textbf RODBC Underfull \hbox (badness 10000) in paragraph at lines 96--96 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 96--96 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 96--96 @texttt package=RODBC[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 97--97 [][]@textbf ROracle Underfull \hbox (badness 10000) in paragraph at lines 97--97 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 97--97 @texttt org / Overfull \hbox (27.49562pt too wide) in paragraph at lines 97--97 @texttt package=ROracle[]@textrm )[][]| Overfull \hbox (2.70708pt too wide) in paragraph at lines 98--98 [][]@textbf RPostgreSQL Underfull \hbox (badness 10000) in paragraph at lines 98--98 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 98--98 @texttt org / Overfull \hbox (50.49037pt too wide) in paragraph at lines 98--98 @texttt package=RPostgreSQL[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 101--101 [][]@textbf RSQLite Underfull \hbox (badness 10000) in paragraph at lines 101--101 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 101--101 @texttt org / Overfull \hbox (27.49562pt too wide) in paragraph at lines 101--101 @texttt package=RSQLite[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 103--103 [][]@textbf WriteXLS Underfull \hbox (badness 10000) in paragraph at lines 103--103 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 103--103 @texttt org / Overfull \hbox (33.24431pt too wide) in paragraph at lines 103--103 @texttt package=WriteXLS[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 104--104 [][]@textbf XLConnect Underfull \hbox (badness 10000) in paragraph at lines 104--104 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 104--104 @texttt org / Overfull \hbox (38.993pt too wide) in paragraph at lines 104--104 @texttt package=XLConnect[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 105--105 [][]@textbf XML Underfull \hbox (badness 10000) in paragraph at lines 105--105 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 105--105 @texttt org / Overfull \hbox (4.50087pt too wide) in paragraph at lines 105--105 @texttt package=XML[]@textrm )[][]| [1] [2] Chapter 1 [3] Writing index file R-data.cp [4] [5] [6] Chapter 2 [7] [8] [9] [10] [11] [12] Chapter 3 [13] [14] Chapter 4 [15] [16] [17] [18] [19] [20] Chapter 5 [21] Chapter 6 [22] Chapter 7 [23] [24] [25] [26] Chapter 8 [27] Chapter 9 [28] Appendix A [29] (Function and variable index) [30] [31] (Concept index) [32] [33] ) (see the transcript file for additional information) Output written on R-data.pdf (37 pages, 309925 bytes). Transcript written on R-data.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-exts.texi This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2018) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.5.0/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2018-03-10.14]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-3.5.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-exts.vr (/builddir/build/BUILD/R-3.5.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-3.5.0/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Acknowledgements) Chapter 1 [1] Writing index file R-exts.cp Cross reference values unknown; you must run TeX again. [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 495--498 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] Overfull \hbox (46.15797pt too wide) in paragraph at lines 2246--2246 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (31.98314pt too wide) in paragraph at lines 2248--2248 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [26] [27] [28] Underfull \hbox (badness 10000) in paragraph at lines 2497--2499 [][][]@smallrm The changes are linked from [][]@smalltt https: / / isocpp . org / std / standing-documents / [29] Overfull \hbox (39.30717pt too wide) in paragraph at lines 2621--2621 [] @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX 11PICFLAGS)")[] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] Overfull \hbox (32.24495pt too wide) in paragraph at lines 4603--4603 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (26.49626pt too wide) in paragraph at lines 4605--4605 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (43.74232pt too wide) in paragraph at lines 4606--4606 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Overfull \hbox (55.2397pt too wide) in paragraph at lines 4617--4617 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [53] [54] [55] [56] [57] [58] [59] Overfull \hbox (32.24495pt too wide) in paragraph at lines 5237--5237 []@texttt 'register' storage class specifier is deprecated and incompatible wi th C++17[] [60] [61] [62] [63] [64] Chapter 2 [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] Underfull \hbox (badness 10000) in paragraph at lines 6734--6741 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [77] [78] Underfull \hbox (badness 10000) in paragraph at lines 6911--6917 []@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu -ally be used within the @textsl text[] @textrm part of [79] [80] [81] [82] Chapter 3 [83] [84] [85] [86] [87] [88] [89] [90] Chapter 4 [91] [92] [93] [94] [95] Underfull \hbox (badness 10000) in paragraph at lines 8206--8215 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. [96] [97] [98] Overfull \hbox (22.55893pt too wide) in paragraph at lines 8483--8484 [][][]@smallrm see [][]@smalltt http: / / llvm . org / devmtg / 2014-04 / PDFs / LightningTalks / EuroLLVM%202014%20--%20container%20overflow . [99] [100] Overfull \hbox (56.55324pt too wide) in paragraph at lines 8616--8616 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_ odr_violation=0'[] Underfull \hbox (badness 10000) in paragraph at lines 8644--8646 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by [101] Overfull \hbox (50.80455pt too wide) in paragraph at lines 8775--8775 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [102] [103] [104] [105] Chapter 5 [106] [107] [108] [109] [110] [111] [112] [113] [114] [115] Overfull \hbox (30.03963pt too wide) in paragraph at lines 9920--9920 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [116] [117] [118] [119] [120] [121] Overfull \hbox (16.31242pt too wide) in paragraph at lines 10498--10498 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [122] [123] [124] [125] [126] [127] [128] [129] [130] [131] Underfull \hbox (badness 10000) in paragraph at lines 11331--11333 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] Overfull \hbox (22.06111pt too wide) in paragraph at lines 12364--12364 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [144] [145] Chapter 6 [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] Warning: unbalanced parentheses in @def... [159] [160] [161] [162] [163] Underfull \hbox (badness 10000) in paragraph at lines 14148--14154 []@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic sEngine.h[]@textrm , @texttt R_ Chapter 7 [164] [165] Chapter 8 [166] [167] [168] Overfull \hbox (22.06111pt too wide) in paragraph at lines 14560--14560 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [169] Overfull \hbox (33.55849pt too wide) in paragraph at lines 14619--14619 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [170] [171] [172] [173] [174] [175] Underfull \hbox (badness 10000) in paragraph at lines 15122--15129 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra- tive in-stall and [176] [177] Underfull \hbox (badness 10000) in paragraph at lines 15245--15249 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or (Function and variable index) [178] No file R-exts.vrs. (Concept index) [179] No file R-exts.cps. [180] ) (see the transcript file for additional information)pdfTeX warning (\pdffontatt r): fonts @textsl and @defsl have conflicting attributes; I will ignore the att ributes assigned to @textsl Output written on R-exts.pdf (183 pages, 884193 bytes). Transcript written on R-exts.log. This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2018) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.5.0/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2018-03-10.14]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-3.5.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-exts.vr (/builddir/build/BUILD/R-3.5.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-3.5.0/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-3.5.0/doc/manual/R-exts.toc [-1] [-2] [-3]) [-4] (/builddir/build/BUILD/R-3.5.0/doc/manual/R-exts.toc) (/builddir/build/BUILD/R-3.5.0/doc/manual/R-exts.toc) (Acknowledgements) (/builddir/build/BUILD/R-3.5.0/doc/manual/R-exts.aux) Chapter 1 [1] Writing index file R-exts.cp [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 495--498 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] Overfull \hbox (46.15797pt too wide) in paragraph at lines 2246--2246 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (31.98314pt too wide) in paragraph at lines 2248--2248 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [26] [27] [28] Underfull \hbox (badness 10000) in paragraph at lines 2497--2499 [][][]@smallrm The changes are linked from [][]@smalltt https: / / isocpp . org / std / standing-documents / [29] Overfull \hbox (39.30717pt too wide) in paragraph at lines 2621--2621 [] @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX 11PICFLAGS)")[] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] Overfull \hbox (32.24495pt too wide) in paragraph at lines 4603--4603 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (26.49626pt too wide) in paragraph at lines 4605--4605 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (43.74232pt too wide) in paragraph at lines 4606--4606 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] [52] Overfull \hbox (55.2397pt too wide) in paragraph at lines 4617--4617 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [53] [54] [55] [56] [57] [58] [59] Overfull \hbox (32.24495pt too wide) in paragraph at lines 5237--5237 []@texttt 'register' storage class specifier is deprecated and incompatible wi th C++17[] [60] [61] [62] [63] [64] Chapter 2 [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] Underfull \hbox (badness 10000) in paragraph at lines 6734--6741 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [77] [78] Underfull \hbox (badness 10000) in paragraph at lines 6911--6917 []@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu -ally be used within the @textsl text[] @textrm part of [79] [80] [81] [82] Chapter 3 [83] [84] [85] [86] [87] [88] [89] [90] Chapter 4 [91] [92] [93] [94] [95] Underfull \hbox (badness 10000) in paragraph at lines 8206--8215 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. [96] [97] [98] Overfull \hbox (22.55893pt too wide) in paragraph at lines 8483--8484 [][][]@smallrm see [][]@smalltt http: / / llvm . org / devmtg / 2014-04 / PDFs / LightningTalks / EuroLLVM%202014%20--%20container%20overflow . [99] [100] Overfull \hbox (56.55324pt too wide) in paragraph at lines 8616--8616 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_ odr_violation=0'[] Underfull \hbox (badness 10000) in paragraph at lines 8644--8646 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by [101] Overfull \hbox (50.80455pt too wide) in paragraph at lines 8775--8775 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [102] [103] [104] [105] Chapter 5 [106] [107] [108] [109] [110] [111] [112] [113] [114] [115] Overfull \hbox (30.03963pt too wide) in paragraph at lines 9920--9920 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [116] [117] [118] [119] [120] [121] Overfull \hbox (16.31242pt too wide) in paragraph at lines 10498--10498 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [122] [123] [124] [125] [126] [127] [128] [129] [130] [131] Underfull \hbox (badness 10000) in paragraph at lines 11331--11333 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] Overfull \hbox (22.06111pt too wide) in paragraph at lines 12364--12364 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [144] [145] Chapter 6 [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] Warning: unbalanced parentheses in @def... [159] [160] [161] [162] [163] Underfull \hbox (badness 10000) in paragraph at lines 14148--14154 []@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic sEngine.h[]@textrm , @texttt R_ Chapter 7 [164] [165] Chapter 8 [166] [167] [168] Overfull \hbox (22.06111pt too wide) in paragraph at lines 14560--14560 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [169] Overfull \hbox (33.55849pt too wide) in paragraph at lines 14619--14619 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [170] [171] [172] [173] [174] [175] Underfull \hbox (badness 10000) in paragraph at lines 15122--15129 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra- tive in-stall and [176] [177] Underfull \hbox (badness 10000) in paragraph at lines 15245--15249 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or (Function and variable index) [178] [179] [180] [181] Overfull \vbox (1.73251pt too high) has occurred while \output is active Overfull \vbox (1.73251pt too high) has occurred while \output is active (Concept index) [182] [183] [184] ) (see the transcript file for additional information)pdfTeX warning (\pdffontatt r): fonts @textsl and @defsl have conflicting attributes; I will ignore the att ributes assigned to @textsl < /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmss10.pfb> Output written on R-exts.pdf (190 pages, 947218 bytes). Transcript written on R-exts.log. This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2018) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.5.0/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2018-03-10.14]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-3.5.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-exts.vr (/builddir/build/BUILD/R-3.5.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-3.5.0/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-3.5.0/doc/manual/R-exts.toc [-1] [-2] [-3]) [-4] (/builddir/build/BUILD/R-3.5.0/doc/manual/R-exts.toc) (/builddir/build/BUILD/R-3.5.0/doc/manual/R-exts.toc) (Acknowledgements) (/builddir/build/BUILD/R-3.5.0/doc/manual/R-exts.aux) Chapter 1 [1] Writing index file R-exts.cp [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 495--498 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] Overfull \hbox (46.15797pt too wide) in paragraph at lines 2246--2246 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (31.98314pt too wide) in paragraph at lines 2248--2248 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [26] [27] [28] Underfull \hbox (badness 10000) in paragraph at lines 2497--2499 [][][]@smallrm The changes are linked from [][]@smalltt https: / / isocpp . org / std / standing-documents / [29] Overfull \hbox (39.30717pt too wide) in paragraph at lines 2621--2621 [] @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX 11PICFLAGS)")[] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] Overfull \hbox (32.24495pt too wide) in paragraph at lines 4603--4603 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (26.49626pt too wide) in paragraph at lines 4605--4605 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (43.74232pt too wide) in paragraph at lines 4606--4606 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] [52] Overfull \hbox (55.2397pt too wide) in paragraph at lines 4617--4617 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [53] [54] [55] [56] [57] [58] [59] Overfull \hbox (32.24495pt too wide) in paragraph at lines 5237--5237 []@texttt 'register' storage class specifier is deprecated and incompatible wi th C++17[] [60] [61] [62] [63] [64] Chapter 2 [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] Underfull \hbox (badness 10000) in paragraph at lines 6734--6741 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [77] [78] Underfull \hbox (badness 10000) in paragraph at lines 6911--6917 []@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu -ally be used within the @textsl text[] @textrm part of [79] [80] [81] [82] Chapter 3 [83] [84] [85] [86] [87] [88] [89] [90] Chapter 4 [91] [92] [93] [94] [95] Underfull \hbox (badness 10000) in paragraph at lines 8206--8215 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. [96] [97] [98] Overfull \hbox (22.55893pt too wide) in paragraph at lines 8483--8484 [][][]@smallrm see [][]@smalltt http: / / llvm . org / devmtg / 2014-04 / PDFs / LightningTalks / EuroLLVM%202014%20--%20container%20overflow . [99] [100] Overfull \hbox (56.55324pt too wide) in paragraph at lines 8616--8616 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_ odr_violation=0'[] Underfull \hbox (badness 10000) in paragraph at lines 8644--8646 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by [101] Overfull \hbox (50.80455pt too wide) in paragraph at lines 8775--8775 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [102] [103] [104] [105] Chapter 5 [106] [107] [108] [109] [110] [111] [112] [113] [114] [115] Overfull \hbox (30.03963pt too wide) in paragraph at lines 9920--9920 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [116] [117] [118] [119] [120] [121] Overfull \hbox (16.31242pt too wide) in paragraph at lines 10498--10498 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [122] [123] [124] [125] [126] [127] [128] [129] [130] [131] Underfull \hbox (badness 10000) in paragraph at lines 11331--11333 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] Overfull \hbox (22.06111pt too wide) in paragraph at lines 12364--12364 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [144] [145] Chapter 6 [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] Warning: unbalanced parentheses in @def... [159] [160] [161] [162] [163] Underfull \hbox (badness 10000) in paragraph at lines 14148--14154 []@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic sEngine.h[]@textrm , @texttt R_ Chapter 7 [164] [165] Chapter 8 [166] [167] [168] Overfull \hbox (22.06111pt too wide) in paragraph at lines 14560--14560 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [169] Overfull \hbox (33.55849pt too wide) in paragraph at lines 14619--14619 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [170] [171] [172] [173] [174] [175] Underfull \hbox (badness 10000) in paragraph at lines 15122--15129 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra- tive in-stall and [176] [177] Underfull \hbox (badness 10000) in paragraph at lines 15245--15249 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or (Function and variable index) [178] [179] [180] [181] Overfull \vbox (1.73251pt too high) has occurred while \output is active Overfull \vbox (1.73251pt too high) has occurred while \output is active (Concept index) [182] [183] [184] ) (see the transcript file for additional information)pdfTeX warning (\pdffontatt r): fonts @textsl and @defsl have conflicting attributes; I will ignore the att ributes assigned to @textsl < /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmss10.pfb> Output written on R-exts.pdf (190 pages, 947216 bytes). Transcript written on R-exts.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-intro.texi This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2018) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.5.0/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2018-03-10.14]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-3.5.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-intro.vr (/builddir/build/BUILD/R-3.5.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-3.5.0/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Preface) Cross reference values unknown; you must run TeX again. Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] [34] [35] [36] [37] [38] Chapter 9 [39] [40] Chapter 10 [41] [42] [43] [44] [45] [46] [47] [48] [49] Chapter 11 [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] Chapter 12 [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] Chapter 13 [76] [77] Chapter 14 [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 6647--6652 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and Underfull \hbox (badness 7064) in paragraph at lines 6647--6652 @texttt \\?\UNC\server\dir1\dir2\file[]@textrm ) are not sup-ported, but they may work in [80] Appendix A [81] [82] [83] Appendix B [84] [85] [86] [87] [88] [89] [90] Appendix C [91] [92] Appendix D [93] No file R-intro.vrs. Appendix E [94] No file R-intro.cps. Appendix F [95] [96] ) (see the transcript file for additional information) Output written on R-intro.pdf (99 pages, 571565 bytes). Transcript written on R-intro.log. This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2018) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.5.0/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2018-03-10.14]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-3.5.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-intro.vr (/builddir/build/BUILD/R-3.5.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-3.5.0/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-3.5.0/doc/manual/R-intro.toc [-1] [-2] [-3]) [-4] (/builddir/build/BUILD/R-3.5.0/doc/manual/R-intro.toc) (/builddir/build/BUILD/R-3.5.0/doc/manual/R-intro.toc) (Preface) (/builddir/build/BUILD/R-3.5.0/doc/manual/R-intro.aux) Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] [34] [35] [36] [37] [38] Chapter 9 [39] [40] Chapter 10 [41] [42] [43] [44] [45] [46] [47] [48] [49] Chapter 11 [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] Chapter 12 [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] Chapter 13 [76] [77] Chapter 14 [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 6647--6652 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and Underfull \hbox (badness 7064) in paragraph at lines 6647--6652 @texttt \\?\UNC\server\dir1\dir2\file[]@textrm ) are not sup-ported, but they may work in [80] Appendix A [81] [82] [83] Appendix B [84] [85] [86] [87] [88] [89] [90] Appendix C [91] [92] Appendix D [93] [94] [95] Appendix E [96] [97] Appendix F [98] [99] ) (see the transcript file for additional information) Output written on R-intro.pdf (105 pages, 621210 bytes). Transcript written on R-intro.log. This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2018) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.5.0/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2018-03-10.14]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-3.5.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-intro.vr (/builddir/build/BUILD/R-3.5.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-3.5.0/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-3.5.0/doc/manual/R-intro.toc [-1] [-2] [-3]) [-4] (/builddir/build/BUILD/R-3.5.0/doc/manual/R-intro.toc) (/builddir/build/BUILD/R-3.5.0/doc/manual/R-intro.toc) (Preface) (/builddir/build/BUILD/R-3.5.0/doc/manual/R-intro.aux) Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] [34] [35] [36] [37] [38] Chapter 9 [39] [40] Chapter 10 [41] [42] [43] [44] [45] [46] [47] [48] [49] Chapter 11 [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] Chapter 12 [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] Chapter 13 [76] [77] Chapter 14 [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 6647--6652 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and Underfull \hbox (badness 7064) in paragraph at lines 6647--6652 @texttt \\?\UNC\server\dir1\dir2\file[]@textrm ) are not sup-ported, but they may work in [80] Appendix A [81] [82] [83] Appendix B [84] [85] [86] [87] [88] [89] [90] Appendix C [91] [92] Appendix D [93] [94] [95] Appendix E [96] [97] Appendix F [98] [99] ) (see the transcript file for additional information) Output written on R-intro.pdf (105 pages, 621219 bytes). Transcript written on R-intro.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-ints.texi This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2018) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.5.0/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2018-03-10.14]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-3.5.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-ints.vr (/builddir/build/BUILD/R-3.5.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-3.5.0/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] Overfull \hbox (27.8098pt too wide) in paragraph at lines 1455--1455 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (56.55324pt too wide) in paragraph at lines 1456--1456 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (45.05586pt too wide) in paragraph at lines 1457--1457 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' (group)generic[] Overfull \hbox (137.03487pt too wide) in paragraph at lines 1458--1458 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [16] [17] [18] [19] [20] [21] Chapter 2 [22] [23] [24] [25] [26] Chapter 3 [27] [28] Chapter 4 [29] [30] Chapter 5 [31] Chapter 6 [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] Chapter 7 [43] Underfull \hbox (badness 10000) in paragraph at lines 3631--3640 @textrm ing been built and in-stalled as a Mac macOS `frame-work'. Specif-i-cal ly, Underfull \hbox (badness 10000) in paragraph at lines 3631--3640 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, as Underfull \hbox (badness 10000) in paragraph at lines 3631--3640 @textrm frame-works can con-tain mul-ti-ple ver-sions of R. It even-tu-ally re- solves to [44] Chapter 8 [45] [46] Underfull \hbox (badness 10000) in paragraph at lines 3852--3857 @textrm the reg-is-tra-tion in-for-ma-tion (num-ber of ar-gu-ments, cor-rect c hoice of [47] [48] [49] [50] [51] [52] Chapter 9 [53] [54] Chapter 10 [55] Chapter 11 [56] Chapter 12 [57] [58] (Function and variable index) [59] No file R-ints.vrs. (Concept index) [60] No file R-ints.cps. [61] ) (see the transcript file for additional information) Output written on R-ints.pdf (64 pages, 393183 bytes). Transcript written on R-ints.log. This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2018) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.5.0/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2018-03-10.14]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-3.5.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-ints.vr (/builddir/build/BUILD/R-3.5.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-3.5.0/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-3.5.0/doc/manual/R-ints.toc [-1]) [-2] (/builddir/build/BUILD/R-3.5.0/doc/manual/R-ints.toc) (/builddir/build/BUILD/R-3.5.0/doc/manual/R-ints.toc) Chapter 1 (/builddir/build/BUILD/R-3.5.0/doc/manual/R-ints.aux) Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] Overfull \hbox (27.8098pt too wide) in paragraph at lines 1455--1455 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (56.55324pt too wide) in paragraph at lines 1456--1456 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (45.05586pt too wide) in paragraph at lines 1457--1457 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' (group)generic[] Overfull \hbox (137.03487pt too wide) in paragraph at lines 1458--1458 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [16] [17] [18] [19] [20] [21] Chapter 2 [22] [23] [24] [25] [26] Chapter 3 [27] [28] Chapter 4 [29] [30] Chapter 5 [31] Chapter 6 [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] Chapter 7 [43] Underfull \hbox (badness 10000) in paragraph at lines 3631--3640 @textrm ing been built and in-stalled as a Mac macOS `frame-work'. Specif-i-cal ly, Underfull \hbox (badness 10000) in paragraph at lines 3631--3640 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, as Underfull \hbox (badness 10000) in paragraph at lines 3631--3640 @textrm frame-works can con-tain mul-ti-ple ver-sions of R. It even-tu-ally re- solves to [44] Chapter 8 [45] [46] Underfull \hbox (badness 10000) in paragraph at lines 3852--3857 @textrm the reg-is-tra-tion in-for-ma-tion (num-ber of ar-gu-ments, cor-rect c hoice of [47] [48] [49] [50] [51] [52] Chapter 9 [53] [54] Chapter 10 [55] Chapter 11 [56] Chapter 12 [57] [58] (Function and variable index) [59] [60] (Concept index) [61] [62] ) (see the transcript file for additional information) Output written on R-ints.pdf (66 pages, 442721 bytes). Transcript written on R-ints.log. This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2018) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.5.0/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2018-03-10.14]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-3.5.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-ints.vr (/builddir/build/BUILD/R-3.5.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-3.5.0/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-3.5.0/doc/manual/R-ints.toc [-1]) [-2] (/builddir/build/BUILD/R-3.5.0/doc/manual/R-ints.toc) (/builddir/build/BUILD/R-3.5.0/doc/manual/R-ints.toc) Chapter 1 (/builddir/build/BUILD/R-3.5.0/doc/manual/R-ints.aux) Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] Overfull \hbox (27.8098pt too wide) in paragraph at lines 1455--1455 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (56.55324pt too wide) in paragraph at lines 1456--1456 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (45.05586pt too wide) in paragraph at lines 1457--1457 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' (group)generic[] Overfull \hbox (137.03487pt too wide) in paragraph at lines 1458--1458 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [16] [17] [18] [19] [20] [21] Chapter 2 [22] [23] [24] [25] [26] Chapter 3 [27] [28] Chapter 4 [29] [30] Chapter 5 [31] Chapter 6 [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] Chapter 7 [43] Underfull \hbox (badness 10000) in paragraph at lines 3631--3640 @textrm ing been built and in-stalled as a Mac macOS `frame-work'. Specif-i-cal ly, Underfull \hbox (badness 10000) in paragraph at lines 3631--3640 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, as Underfull \hbox (badness 10000) in paragraph at lines 3631--3640 @textrm frame-works can con-tain mul-ti-ple ver-sions of R. It even-tu-ally re- solves to [44] Chapter 8 [45] [46] Underfull \hbox (badness 10000) in paragraph at lines 3852--3857 @textrm the reg-is-tra-tion in-for-ma-tion (num-ber of ar-gu-ments, cor-rect c hoice of [47] [48] [49] [50] [51] [52] Chapter 9 [53] [54] Chapter 10 [55] Chapter 11 [56] Chapter 12 [57] [58] (Function and variable index) [59] [60] (Concept index) [61] [62] ) (see the transcript file for additional information) Output written on R-ints.pdf (66 pages, 442728 bytes). Transcript written on R-ints.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-lang.texi This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2018) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.5.0/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2018-03-10.14]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-3.5.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-lang.vr (/builddir/build/BUILD/R-3.5.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-3.5.0/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-lang.cp Chapter 2 [1] [2] Cross reference values unknown; you must run TeX again. Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294 @textbf storage.mode| [3] [4] [5] [6] [7] Chapter 3 [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27] [28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7 [39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] Underfull \hbox (badness 10000) in paragraph at lines 4342--4344 []@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be found by [46] [47] [48] [49] [50] (Function and Variable Index) [51] No file R-lang.vrs. (Concept Index) [52] No file R-lang.cps. Appendix A [53] [54] ) (see the transcript file for additional information) Output written on R-lang.pdf (57 pages, 326362 bytes). Transcript written on R-lang.log. This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2018) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.5.0/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2018-03-10.14]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-3.5.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-lang.vr (/builddir/build/BUILD/R-3.5.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-3.5.0/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-3.5.0/doc/manual/R-lang.toc [-1] [-2]) [-3] (/builddir/build/BUILD/R-3.5.0/doc/manual/R-lang.toc) (/builddir/build/BUILD/R-3.5.0/doc/manual/R-lang.toc) Chapter 1 (/builddir/build/BUILD/R-3.5.0/doc/manual/R-lang.aux) Writing index file R-lang.cp Chapter 2 [1] [2] Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294 @textbf storage.mode| [3] [4] [5] [6] [7] Chapter 3 [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27] [28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7 [39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] Underfull \hbox (badness 10000) in paragraph at lines 4342--4344 []@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be found by [46] [47] [48] [49] [50] (Function and Variable Index) [51] [52] (Concept Index) [53] Appendix A [54] [55] ) (see the transcript file for additional information) Output written on R-lang.pdf (60 pages, 374804 bytes). Transcript written on R-lang.log. This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2018) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.5.0/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2018-03-10.14]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-3.5.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-lang.vr (/builddir/build/BUILD/R-3.5.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-3.5.0/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-3.5.0/doc/manual/R-lang.toc [-1] [-2]) [-3] (/builddir/build/BUILD/R-3.5.0/doc/manual/R-lang.toc) (/builddir/build/BUILD/R-3.5.0/doc/manual/R-lang.toc) Chapter 1 (/builddir/build/BUILD/R-3.5.0/doc/manual/R-lang.aux) Writing index file R-lang.cp Chapter 2 [1] [2] Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294 @textbf storage.mode| [3] [4] [5] [6] [7] Chapter 3 [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27] [28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7 [39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] Underfull \hbox (badness 10000) in paragraph at lines 4342--4344 []@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be found by [46] [47] [48] [49] [50] (Function and Variable Index) [51] [52] (Concept Index) [53] Appendix A [54] [55] ) (see the transcript file for additional information) Output written on R-lang.pdf (60 pages, 374811 bytes). Transcript written on R-lang.log. make[2]: Leaving directory '/builddir/build/BUILD/R-3.5.0/doc/manual' make[1]: Leaving directory '/builddir/build/BUILD/R-3.5.0/doc' + cp doc/manual/R-exts.texi doc/manual/R-exts.texi.spot + cp doc/manual/R-intro.texi doc/manual/R-intro.texi.spot + sed -i 's|@eqn|@math|g' doc/manual/R-exts.texi + sed -i 's|@eqn|@math|g' doc/manual/R-intro.texi + make MAKEINFO=texi2any info make[1]: Entering directory '/builddir/build/BUILD/R-3.5.0/doc' make[2]: Entering directory '/builddir/build/BUILD/R-3.5.0/doc/manual' texi2any --enable-encoding -D UseExternalXrefs -I. R-FAQ.texi texi2any --enable-encoding -D UseExternalXrefs -I. R-admin.texi texi2any --enable-encoding -D UseExternalXrefs -I. R-data.texi texi2any --enable-encoding -D UseExternalXrefs -I. R-exts.texi texi2any --enable-encoding -D UseExternalXrefs -I. R-intro.texi texi2any --enable-encoding -D UseExternalXrefs -I. R-ints.texi texi2any --enable-encoding -D UseExternalXrefs -I. R-lang.texi make[2]: Leaving directory '/builddir/build/BUILD/R-3.5.0/doc/manual' make[1]: Leaving directory '/builddir/build/BUILD/R-3.5.0/doc' + for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1 + iconv -f iso-8859-1 -t utf-8 -o doc/manual/R-intro.info.utf8 doc/manual/R-intro.info + mv doc/manual/R-intro.info.utf8 doc/manual/R-intro.info + for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1 + iconv -f iso-8859-1 -t utf-8 -o doc/manual/R-FAQ.info.utf8 doc/manual/R-FAQ.info + mv doc/manual/R-FAQ.info.utf8 doc/manual/R-FAQ.info + for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1 + iconv -f iso-8859-1 -t utf-8 -o doc/FAQ.utf8 doc/FAQ + mv doc/FAQ.utf8 doc/FAQ + for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1 + iconv -f iso-8859-1 -t utf-8 -o 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doc/manual/R-intro.texi.spot doc/manual/R-intro.texi + make DESTDIR=/builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64 install-pdf make[1]: Entering directory '/builddir/build/BUILD/R-3.5.0/doc/manual' TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-exts.texi This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2018) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.5.0/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2018-03-10.14]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-3.5.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-exts.vr (/builddir/build/BUILD/R-3.5.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-3.5.0/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-3.5.0/doc/manual/R-exts.toc [-1] [-2] [-3]) [-4] (/builddir/build/BUILD/R-3.5.0/doc/manual/R-exts.toc) (/builddir/build/BUILD/R-3.5.0/doc/manual/R-exts.toc) (Acknowledgements) (/builddir/build/BUILD/R-3.5.0/doc/manual/R-exts.aux) Chapter 1 [1] Writing index file R-exts.cp [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 495--498 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] Overfull \hbox (46.15797pt too wide) in paragraph at lines 2246--2246 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (31.98314pt too wide) in paragraph at lines 2248--2248 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [26] [27] [28] Underfull \hbox (badness 10000) in paragraph at lines 2497--2499 [][][]@smallrm The changes are linked from [][]@smalltt https: / / isocpp . org / std / standing-documents / [29] Overfull \hbox (39.30717pt too wide) in paragraph at lines 2621--2621 [] @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX 11PICFLAGS)")[] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] Overfull \hbox (32.24495pt too wide) in paragraph at lines 4603--4603 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (26.49626pt too wide) in paragraph at lines 4605--4605 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (43.74232pt too wide) in paragraph at lines 4606--4606 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] [52] Overfull \hbox (55.2397pt too wide) in paragraph at lines 4617--4617 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [53] [54] [55] [56] [57] [58] [59] Overfull \hbox (32.24495pt too wide) in paragraph at lines 5237--5237 []@texttt 'register' storage class specifier is deprecated and incompatible wi th C++17[] [60] [61] [62] [63] [64] Chapter 2 [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] Underfull \hbox (badness 10000) in paragraph at lines 6734--6741 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [77] [78] Underfull \hbox (badness 10000) in paragraph at lines 6911--6917 []@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu -ally be used within the @textsl text[] @textrm part of [79] [80] [81] [82] Chapter 3 [83] [84] [85] [86] [87] [88] [89] [90] Chapter 4 [91] [92] [93] [94] [95] Underfull \hbox (badness 10000) in paragraph at lines 8206--8215 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. [96] [97] [98] Overfull \hbox (22.55893pt too wide) in paragraph at lines 8483--8484 [][][]@smallrm see [][]@smalltt http: / / llvm . org / devmtg / 2014-04 / PDFs / LightningTalks / EuroLLVM%202014%20--%20container%20overflow . [99] [100] Overfull \hbox (56.55324pt too wide) in paragraph at lines 8616--8616 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_ odr_violation=0'[] Underfull \hbox (badness 10000) in paragraph at lines 8644--8646 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by [101] Overfull \hbox (50.80455pt too wide) in paragraph at lines 8775--8775 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [102] [103] [104] [105] Chapter 5 [106] [107] [108] [109] [110] [111] [112] [113] [114] [115] Overfull \hbox (30.03963pt too wide) in paragraph at lines 9920--9920 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [116] [117] [118] [119] [120] [121] Overfull \hbox (16.31242pt too wide) in paragraph at lines 10498--10498 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [122] [123] [124] [125] [126] [127] [128] [129] [130] [131] Underfull \hbox (badness 10000) in paragraph at lines 11331--11333 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] Overfull \hbox (22.06111pt too wide) in paragraph at lines 12364--12364 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [144] [145] Chapter 6 [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] Warning: unbalanced parentheses in @def... [159] [160] [161] [162] [163] Underfull \hbox (badness 10000) in paragraph at lines 14148--14154 []@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic sEngine.h[]@textrm , @texttt R_ Chapter 7 [164] [165] Chapter 8 [166] [167] [168] Overfull \hbox (22.06111pt too wide) in paragraph at lines 14560--14560 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [169] Overfull \hbox (33.55849pt too wide) in paragraph at lines 14619--14619 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [170] [171] [172] [173] [174] [175] Underfull \hbox (badness 10000) in paragraph at lines 15122--15129 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra- tive in-stall and [176] [177] Underfull \hbox (badness 10000) in paragraph at lines 15245--15249 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or (Function and variable index) [178] [179] [180] [181] Overfull \vbox (1.73251pt too high) has occurred while \output is active Overfull \vbox (1.73251pt too high) has occurred while \output is active (Concept index) [182] [183] [184] ) (see the transcript file for additional information)pdfTeX warning (\pdffontatt r): fonts @textsl and @defsl have conflicting attributes; I will ignore the att ributes assigned to @textsl < /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmss10.pfb> Output written on R-exts.pdf (190 pages, 947216 bytes). Transcript written on R-exts.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-intro.texi This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2018) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/R-3.5.0/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2018-03-10.14]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/builddir/build/BUILD/R-3.5.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-intro.vr (/builddir/build/BUILD/R-3.5.0/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/builddir/build/BUILD/R-3.5.0/doc/manual/version.texi) [1{/usr/share/texlive/t exmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/builddir/build/BUILD/R-3.5.0/doc/manual/R-intro.toc [-1] [-2] [-3]) [-4] (/builddir/build/BUILD/R-3.5.0/doc/manual/R-intro.toc) (/builddir/build/BUILD/R-3.5.0/doc/manual/R-intro.toc) (Preface) (/builddir/build/BUILD/R-3.5.0/doc/manual/R-intro.aux) Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] [34] [35] [36] [37] [38] Chapter 9 [39] [40] Chapter 10 [41] [42] [43] [44] [45] [46] [47] [48] [49] Chapter 11 [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] Chapter 12 [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] Chapter 13 [76] [77] Chapter 14 [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 6647--6652 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and Underfull \hbox (badness 7064) in paragraph at lines 6647--6652 @texttt \\?\UNC\server\dir1\dir2\file[]@textrm ) are not sup-ported, but they may work in [80] Appendix A [81] [82] [83] Appendix B [84] [85] [86] [87] [88] [89] [90] Appendix C [91] [92] Appendix D [93] [94] [95] Appendix E [96] [97] Appendix F [98] [99] ) (see the transcript file for additional information) Output written on R-intro.pdf (105 pages, 621219 bytes). Transcript written on R-intro.log. installing R manuals in PDF format ... make[1]: Leaving directory '/builddir/build/BUILD/R-3.5.0/doc/manual' + rm -f /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/share/info/dir + rm -f /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/share/info/dir.old + mkdir -p /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/share/doc/R + install -p CAPABILITIES /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/share/doc/R + cd src/nmath/standalone + make install DESTDIR=/builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64 make[1]: Entering directory '/builddir/build/BUILD/R-3.5.0/src/include' make[1]: 'Rmath.h' is up to date. make[1]: Leaving directory '/builddir/build/BUILD/R-3.5.0/src/include' + mkdir -p /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/etc/ld.so.conf.d + echo /usr/lib64/R/lib + mkdir -p /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/share/R/library + mkdir -p 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$RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/cats.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/cement.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/chem.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/con2tr.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/confint.html + 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/builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/cov.trob.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/cpus.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/crabs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/deaths.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/denumerate.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/dose.p.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/drivers.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/dropterm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/eagles.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/epil.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/eqscplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/farms.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/fgl.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/fitdistr.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/forbes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/fractions.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/galaxies.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/gamma.dispersion.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/gamma.shape.glm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/gehan.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/genotype.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/geyser.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/gilgais.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/ginv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/glm.convert.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/glm.nb.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/glmmPQL.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/hills.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/hist.scott.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/housing.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/huber.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/hubers.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/immer.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/isoMDS.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/kde2d.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/lda.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/ldahist.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/leuk.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/lm.gls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/lm.ridge.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/loglm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/loglm1.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/logtrans.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/lqs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/mammals.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/mca.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/mcycle.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/menarche.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/michelson.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/minn38.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/motors.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/muscle.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/mvrnorm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/negative.binomial.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/newcomb.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/nlschools.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/npk.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/npr1.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/oats.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/painters.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/pairs.lda.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/parcoord.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/petrol.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/phones.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/plot.lda.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/plot.mca.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/plot.profile.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/polr.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/predict.glmmPQL.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/predict.lda.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/predict.lqs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/predict.mca.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/predict.qda.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/profile.glm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/qda.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/quine.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/rational.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/renumerate.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/rlm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/rms.curv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/rnegbin.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/road.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/rotifer.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/sammon.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/ships.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/shoes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/shrimp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/shuttle.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/snails.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/stdres.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/steam.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/stepAIC.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/stormer.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/studres.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/summary.loglm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/summary.negbin.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/summary.rlm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/survey.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/synth.tr.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/theta.md.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/topo.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/truehist.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/ucv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/waders.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/whiteside.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/width.SJ.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/write.matrix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/MASS/html/wtloss.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/BunchKaufman-methods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/CAex.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/CHMfactor-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/Cholesky-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/Cholesky.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/CsparseMatrix-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/Diagonal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/Hilbert.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/KNex.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/KhatriRao.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/LU-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/Matrix-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/Matrix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/MatrixClass.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/MatrixFactorization-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/RsparseMatrix-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/Schur-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/Schur.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/SparseM-conv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/Subassign-methods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/TsparseMatrix-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/USCounties.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/Xtrct-methods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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$RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/band.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/bandSparse.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/bdiag.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/boolean-matprod.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/graph2T.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/image-methods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/indMatrix-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/index-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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$RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/nMatrix-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/ndenseMatrix-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/nearPD.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/ngeMatrix-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/number-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/pMatrix-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/printSpMatrix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/qr-methods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/rankMatrix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/rcond.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/rep2abI.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/replValue-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/rleDiff-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/rsparsematrix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/solve-methods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/spMatrix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/sparse.model.matrix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/sparseLU-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/sparseMatrix-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/sparseMatrix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/sparseQR-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/sparseVector-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/sparseVector.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/symmetricMatrix-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/symmpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/triangularMatrix-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/uniqTsparse.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/unpack.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/unused-classes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/html/updown.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Arithmetic.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/AsIs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Bessel.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/CallExternal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Colon.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Comparison.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Constants.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Control.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Cstack_info.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/DateTimeClasses.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Dates.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Defunct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Deprecated.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Encoding.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/EnvVar.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Extract.data.frame.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Extract.factor.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Extract.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Extremes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Foreign-internal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Foreign.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Hyperbolic.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/ISOdatetime.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Internal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/InternalMethods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/La_library.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/La_version.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Last.value.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Log.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Logic.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/LongVectors.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/MathFun.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Memory-limits.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Memory.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/NA.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/NULL.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/NumericConstants.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Ops.Date.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Paren.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Platform.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Primitive.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Quotes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Random-user.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Random.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/RdUtils.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Recall.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Reserved.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Rhome.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Round.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Signals.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Special.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Startup.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Syntax.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Sys.getenv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Sys.getpid.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Sys.glob.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Sys.info.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Sys.localeconv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Sys.readlink.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Sys.setFileTime.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Sys.setenv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Sys.sleep.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Sys.time.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Sys.which.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Trig.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/UseMethod.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Vectorize.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/Version.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/abbreviate.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/agrep.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/all.equal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/all.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/allnames.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/any.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/aperm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/append.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/apply.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/args.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/array.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/as.Date.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/as.POSIXlt.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/as.data.frame.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/as.environment.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/as.function.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/assign.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/assignOps.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/attach.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/attr.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/attributes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/autoload.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/backsolve.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/base-defunct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/base-deprecated.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/base-internal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/base-package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/basename.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/bincode.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/bindenv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/bitwise.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/body.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/bquote.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/browser.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/browserText.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/builtins.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/by.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/c.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/call.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/callCC.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/capabilities.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/cat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/cbind.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/char.expand.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/character.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/charmatch.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/chartr.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/chkDots.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/chol.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/chol2inv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/col.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/colSums.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/colnames.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/commandArgs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/comment.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/complex.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/conditions.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/conflicts.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/connections.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/contributors.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/copyright.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/crossprod.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/cumsum.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/curlGetHeaders.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/cut.POSIXt.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/cut.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/data.class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/data.frame.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/data.matrix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/dataframeHelpers.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/date.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/dcf.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/debug.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/delayedAssign.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/deparse.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/deparseOpts.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/det.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/detach.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/dev.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/diag.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/diff.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/difftime.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/dim.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/dimnames.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/do.call.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/dontCheck.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/dots.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/double.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/dput.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/drop.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/droplevels.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/dump.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/duplicated.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/dynload.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/eapply.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/eigen.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/encodeString.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/environment.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/eval.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/exists.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/expand.grid.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/expression.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/extSoftVersion.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/factor.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/file.access.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/file.choose.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/file.info.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/file.path.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/file.show.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/files.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/files2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/find.package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/findInterval.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/force.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/forceAndCall.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/formals.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/format.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/format.info.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/format.pval.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/formatDL.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/formatc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/function.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/funprog.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/gc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/gc.time.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/gctorture.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/get.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/getCallingDLL.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/getDLLRegisteredRoutines.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/getLoadedDLLs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/getNativeSymbolInfo.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/gettext.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/getwd.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/gl.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/grep.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/grepRaw.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/groupGeneric.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/grouping.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/gzcon.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/hexmode.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/iconv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/icuSetCollate.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/identical.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/identity.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/ifelse.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/integer.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/interaction.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/interactive.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/invisible.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/is.finite.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/is.function.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/is.language.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/is.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/is.recursive.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/is.single.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/is.unsorted.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/isR.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/isS4.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/isSymmetric.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/jitter.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/kappa.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/kronecker.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/l10n_info.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/labels.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/lapply.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/lazyload.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/length.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/lengths.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/levels.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/libPaths.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/libcurlVersion.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/library.dynam.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/library.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/license.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/list.files.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/list.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/list2env.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/load.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/locales.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/logical.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/lower.tri.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/ls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/make.names.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/make.unique.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/mapply.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/margin.table.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/mat.or.vec.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/match.arg.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/match.call.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/match.fun.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/match.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/matmult.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/matrix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/maxCol.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/mean.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/memCompress.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/memory.profile.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/merge.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/message.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/missing.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/mode.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/name.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/names.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/nargs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/nchar.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/nlevels.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/noquote.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/norm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/normalizePath.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/notyet.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/nrow.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/ns-dblcolon.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/ns-hooks.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/ns-internal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/ns-load.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/ns-reflect.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/ns-topenv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/numeric.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/numeric_version.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/octmode.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/on.exit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/options.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/order.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/outer.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/parse.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/paste.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/path.expand.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/pcre_config.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/pmatch.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/polyroot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/pos.to.env.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/pretty.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/print.dataframe.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/print.default.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/print.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/prmatrix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/proc.time.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/prod.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/prop.table.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/pushBack.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/qr.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/qraux.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/quit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/range.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/rank.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/rapply.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/raw.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/rawConnection.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/rawConversion.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/readBin.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/readChar.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/readLines.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/readRDS.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/readRenviron.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/readline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/reg.finalizer.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/regex.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/regmatches.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/rep.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/replace.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/rev.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/rle.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/rm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/round.POSIXt.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/row.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/row.names.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/rowsum.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/sQuote.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/sample.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/save.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/scale.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/scan.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/search.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/seek.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/seq.Date.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/seq.POSIXt.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/seq.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/sequence.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/serialize.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/setTimeLimit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/sets.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/shQuote.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/showConnections.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/sign.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/sink.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/slice.index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/slotOp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/socketSelect.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/solve.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/sort.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/source.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/split.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/sprintf.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/srcfile.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/standardGeneric.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/startsWith.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/stop.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/stopifnot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/strptime.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/strrep.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/strsplit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/strtoi.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/strtrim.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/structure.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/strwrap.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/subset.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/substitute.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/substr.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/sum.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/summary.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/svd.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/sweep.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/switch.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/sys.parent.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/sys.source.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/system.file.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/system.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/system.time.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/system2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/t.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/table.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/tabulate.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/tapply.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/taskCallback.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/taskCallbackManager.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/taskCallbackNames.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/tempfile.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/textconnections.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/tilde.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/timezones.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/toString.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/trace.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/traceback.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/tracemem.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/transform.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/trimws.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/try.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/typeof.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/unique.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/unlink.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/unlist.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/unname.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/userhooks.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/utf8Conversion.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/validUTF8.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/vector.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/warning.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/warnings.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/weekday.POSIXt.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/which.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/which.min.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/with.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/withVisible.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/write.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/writeLines.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/xtfrm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/zMachine.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/zScript.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/zapsmall.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/zpackages.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/base/html/zutils.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/EEF.profile.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/Imp.Estimates.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/abc.ci.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/acme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/aids.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/aircondit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/amis.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/aml.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/beaver.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/bigcity.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/boot-practicals.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/boot.array.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/boot.ci.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/boot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/brambles.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/breslow.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/calcium.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/cane.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/capability.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/catsM.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/cav.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/cd4.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/cd4.nested.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/censboot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/channing.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/claridge.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/cloth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/co.transfer.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/coal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/control.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/corr.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/cum3.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/cv.glm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/darwin.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/dogs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/downs.bc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/ducks.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/empinf.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/envelope.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/exp.tilt.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/fir.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/freq.array.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/frets.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/glm.diag.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/glm.diag.plots.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/gravity.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/hirose.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/imp.weights.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/inv.logit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/islay.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/jack.after.boot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/k3.linear.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/linear.approx.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/lines.saddle.distn.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/logit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/manaus.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/melanoma.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/motor.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/neuro.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/nitrofen.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/nodal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/norm.ci.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/nuclear.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/paulsen.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/plot.boot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/poisons.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/polar.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/print.boot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/print.bootci.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/print.saddle.distn.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/print.simplex.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/remission.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/saddle.distn.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/saddle.distn.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/saddle.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/salinity.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/simplex.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/simplex.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/smooth.f.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/sunspot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/survival.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/tau.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/tilt.boot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/tsboot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/tuna.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/urine.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/var.linear.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/boot/html/wool.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/class/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/class/html/SOM.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/class/html/batchSOM.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/class/html/condense.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/class/html/knn.cv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/class/html/knn.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/class/html/knn1.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/class/html/lvq1.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/class/html/lvq2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/class/html/lvq3.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/class/html/lvqinit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/class/html/lvqtest.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/class/html/multiedit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/class/html/olvq1.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/class/html/reduce.nn.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/class/html/somgrid.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/agnes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/agnes.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/agriculture.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/animals.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/bannerplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/chorSub.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/clara.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/clara.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/clusGap.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/clusplot.default.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/clusplot.partition.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/cluster-internal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/coef.hclust.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/daisy.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/diana.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/dissimilarity.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/ellipsoidhull.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/fanny.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/fanny.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/flower.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/lower.to.upper.tri.inds.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/mona.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/mona.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/pam.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/pam.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/partition.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/plantTraits.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/plot.agnes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/plot.diana.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/plot.mona.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/plot.partition.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/pltree.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/pluton.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/predict.ellipsoid.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/print.agnes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/print.clara.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/print.diana.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/print.dissimilarity.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/print.fanny.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/print.mona.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/print.pam.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/ruspini.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/silhouette.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/sizeDiss.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/summary.agnes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/summary.clara.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/summary.diana.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/summary.mona.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/summary.pam.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/twins.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/volume.ellipsoid.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/votes.repub.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/html/xclara.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/codetools/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/codetools/html/checkUsage.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/codetools/html/codetools.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/codetools/html/findGlobals.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/codetools/html/showTree.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/compiler/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/compiler/html/compile.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/AirPassengers.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/BJsales.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/BOD.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/ChickWeight.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/DNase.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/EuStockMarkets.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/Formaldehyde.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/HairEyeColor.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/Harman23.cor.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/Harman74.cor.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/Indometh.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/InsectSprays.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/JohnsonJohnson.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/LakeHuron.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/LifeCycleSavings.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/Loblolly.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/Nile.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/Orange.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/OrchardSprays.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/PlantGrowth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/Puromycin.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/Theoph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/Titanic.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/ToothGrowth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/UCBAdmissions.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/UKDriverDeaths.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/UKLungDeaths.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/UKgas.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/USAccDeaths.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/USArrests.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/USJudgeRatings.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/USPersonalExpenditure.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/VADeaths.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/WWWusage.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/WorldPhones.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/ability.cov.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/airmiles.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/airquality.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/anscombe.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/attenu.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/attitude.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/austres.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/beavers.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/cars.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/chickwts.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/co2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/crimtab.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/datasets-package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/discoveries.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/esoph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/euro.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/eurodist.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/faithful.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/freeny.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/infert.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/iris.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/islands.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/lh.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/longley.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/lynx.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/morley.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/mtcars.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/nhtemp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/nottem.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/npk.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/occupationalStatus.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/precip.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/presidents.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/pressure.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/quakes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/randu.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/rivers.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/rock.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/sleep.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/stackloss.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/state.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/sunspot.month.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/sunspot.year.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/sunspots.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/swiss.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/treering.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/trees.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/uspop.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/volcano.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/warpbreaks.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/women.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/datasets/html/zCO2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/foreign/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/foreign/html/lookup.xport.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/foreign/html/read.S.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/foreign/html/read.arff.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/foreign/html/read.dbf.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/foreign/html/read.dta.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/foreign/html/read.epiinfo.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/foreign/html/read.mtp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/foreign/html/read.octave.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/foreign/html/read.spss.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/foreign/html/read.ssd.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/foreign/html/read.systat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/foreign/html/read.xport.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/foreign/html/write.arff.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/foreign/html/write.dbf.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/foreign/html/write.dta.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/foreign/html/write.foreign.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/Devices.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/Hershey.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/Japanese.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/Type1Font.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/adjustcolor.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/as.graphicsAnnot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/as.raster.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/axisTicks.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/boxplot.stats.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/cairo.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/check.options.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/chull.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/cm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/col2rgb.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/colorRamp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/colors.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/contourLines.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/convertColor.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/densCols.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/dev.capabilities.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/dev.capture.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/dev.flush.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/dev.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/dev.interactive.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/dev.size.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/dev2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/dev2bitmap.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/devAskNewPage.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/embedFonts.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/extendrange.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/getGraphicsEvent.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/grDevices-package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/grSoftVersion.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/gray.colors.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/gray.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/hcl.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/hsv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/make.rgb.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/n2mfrow.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/nclass.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/palette.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/palettes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/pdf.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/pdf.options.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/pictex.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/plotmath.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/png.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/postscript.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/postscriptFonts.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/pretty.Date.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/ps.options.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/quartz.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/quartzFonts.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/recordGraphics.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/recordplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/rgb.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/rgb2hsv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/savePlot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/trans3d.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/x11.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/x11Fonts.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/xfig.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/xy.coords.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/xyTable.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grDevices/html/xyz.coords.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/abline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/arrows.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/assocplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/axTicks.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/axis.POSIXct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/axis.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/barplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/box.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/boxplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/boxplot.matrix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/bxp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/cdplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/clip.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/contour.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/convertXY.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/coplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/curve.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/dotchart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/filled.contour.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/fourfoldplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/frame.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/graphics-defunct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/graphics-package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/grid.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/hist.POSIXt.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/hist.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/identify.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/image.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/layout.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/legend.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/lines.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/locator.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/matplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/mosaicplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/mtext.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/pairs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/panel.smooth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/par.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/persp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/pie.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/plot.dataframe.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/plot.default.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/plot.design.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/plot.factor.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/plot.formula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/plot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/plot.raster.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/plot.table.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/plot.window.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/plot.xy.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/plothistogram.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/points.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/polygon.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/polypath.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/rasterImage.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/rect.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/rug.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/screen.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/segments.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/smoothScatter.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/spineplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/stars.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/stem.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/stripchart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/strwidth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/sunflowerplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/symbols.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/text.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/title.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/units.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/xspline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/graphics/html/zAxis.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/Grid.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/absolute.size.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/arrow.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/calcStringMetric.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/current.viewport.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/dataViewport.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/depth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/drawDetails.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/editDetails.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/explode.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/gEdit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/gPath.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/getNames.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/gpar.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid-defunct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid-internal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid-package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.DLapply.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.add.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.bezier.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.cap.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.circle.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.clip.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.convert.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.copy.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.curve.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.delay.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.display.list.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.draw.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.edit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.force.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.frame.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.function.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.get.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.grab.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.grep.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.grill.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.grob.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.layout.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.lines.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.locator.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.ls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.move.to.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.newpage.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.null.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.pack.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.path.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.place.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.plot.and.legend.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.points.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.polygon.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.pretty.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.raster.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.record.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.rect.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.refresh.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.remove.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.reorder.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.roundrect.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.segments.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.set.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.show.layout.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.show.viewport.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.text.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.xaxis.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.xspline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grid.yaxis.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grobName.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grobWidth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/grobX.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/legendGrob.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/makeContent.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/plotViewport.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/resolveRasterSize.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/showGrob.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/showViewport.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/stringWidth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/unit.c.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/unit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/unit.length.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/unit.pmin.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/unit.rep.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/valid.just.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/validDetails.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/viewport.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/viewports.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/vpPath.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/widthDetails.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/xDetails.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/grid/html/xsplinePoints.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/Lattice.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/Rows.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/USMortality.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/axis.default.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/banking.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/barchart.table.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/barley.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/cloud.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/draw.colorkey.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/draw.key.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/environmental.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/ethanol.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/histogram.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/interaction.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/lattice.options.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/latticeParseFormula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/level.colors.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/levelplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/llines.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/lset.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/make.groups.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/melanoma.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/oneway.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/packet.panel.default.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/panel.axis.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/panel.barchart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/panel.bwplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/panel.cloud.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/panel.densityplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/panel.dotplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/panel.functions.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/panel.histogram.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/panel.levelplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/panel.loess.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/panel.number.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/panel.pairs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/panel.parallel.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/panel.qqmath.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/panel.qqmathline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/panel.smoothScatter.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/panel.spline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/panel.stripplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/panel.superpose.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/panel.violin.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/panel.xyplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/prepanel.default.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/prepanel.functions.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/print.trellis.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/qq.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/qqmath.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/rfs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/shingles.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/simpleKey.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/simpleTheme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/singer.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/splom.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/strip.default.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/tmd.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/trellis.device.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/trellis.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/trellis.par.get.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/update.trellis.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/utilities.3d.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/xyplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/html/xyplot.ts.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/BasicClasses.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/Classes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/Classes_Details.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/Documentation.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/EmptyMethodsList-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/EnvironmentClass.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/GenericFunctions.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/Introduction.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/LanguageClasses.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/LinearMethodsList-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/MethodDefinition-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/MethodSupport.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/MethodWithNext-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/Methods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/MethodsList-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/MethodsList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/Methods_Details.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/Methods_for_Nongenerics.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/Methods_for_S3.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/NextMethod.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/ObjectsWithPackage-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/RClassUtils.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/RMethodUtils.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/S3Part.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/S4groupGeneric.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/SClassExtension-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/StructureClasses.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/TraceClasses.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/as.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/callGeneric.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/canCoerce.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/cbind2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/className.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/classRepresentation-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/classesToAM.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/dotsMethods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/evalSource.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/findClass.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/findMethods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/fixPrevious.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/genericFunction-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/getClass.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/getMethod.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/getPackageName.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/hasArg.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/implicitGeneric.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/inheritedSlotNames.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/initialize-methods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/is.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/isSealedMethod.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/languageEl.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/localRefClass.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/method.skeleton.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/methodUtilities.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/methods-defunct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/methods-deprecated.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/methods-package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/new.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/nonStructure-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/promptClass.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/promptMethods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/refClass.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/removeMethod.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/representation.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/selectSuperClasses.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/setAs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/setClass.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/setClassUnion.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/setGeneric.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/setGroupGeneric.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/setIs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/setLoadActions.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/setMethod.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/setOldClass.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/setSClass.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/show.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/showMethods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/signature-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/slot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/stdRefClass.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/substituteDirect.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/testInheritedMethods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/validObject.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/methods/html/zBasicFunsList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/Beta.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/Predict.matrix.cr.smooth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/Predict.matrix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/Predict.matrix.soap.film.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/Rrank.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/Sl.initial.repara.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/Sl.repara.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/Sl.setup.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/Tweedie.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/anova.gam.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/bam.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/bam.update.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/bandchol.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/bug.reports.mgcv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/cSplineDes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/choose.k.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/columb.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/concurvity.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/coxph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/coxpht.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/dDeta.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/exclude.too.far.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/extract.lme.cov.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/family.mgcv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/fix.family.link.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/fixDependence.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/formXtViX.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/formula.gam.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/fs.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/full.score.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/gam.check.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/gam.control.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/gam.convergence.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/gam.fit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/gam.fit3.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/gam.fit5.post.proc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/gam.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/gam.models.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/gam.outer.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/gam.reparam.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/gam.scale.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/gam.selection.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/gam.side.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/gam.vcomp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/gam2objective.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/gamObject.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/gamSim.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/gamlss.etamu.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/gamlss.gH.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/gamm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/gaulss.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/get.var.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/gevlss.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/identifiability.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/in.out.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/inSide.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/influence.gam.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/initial.sp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/interpret.gam.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/jagam.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/ldTweedie.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/ldetS.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/linear.functional.terms.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/logLik.gam.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/ls.size.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/magic.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/magic.post.proc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/mgcv-FAQ.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/mgcv-package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/mgcv-parallel.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/mini.roots.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/missing.data.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/model.matrix.gam.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/mono.con.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/mroot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/multinom.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/mvn.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/negbin.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/new.name.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/notExp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/notExp2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/null.space.dimension.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/ocat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/one.se.rule.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/pcls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/pdIdnot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/html/pdTens.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 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$RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Fatigue.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Gasoline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Glucose.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Glucose2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Gun.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/IGF.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Initialize.corStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Initialize.glsStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Initialize.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Initialize.lmeStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Initialize.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Initialize.varFunc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/LDEsysMat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Machines.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/MathAchSchool.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/MathAchieve.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Matrix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Matrix.pdMat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Matrix.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Meat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Milk.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Muscle.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Names.formula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Names.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Names.pdBlocked.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Names.pdMat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Names.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Nitrendipene.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Oats.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Orthodont.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Ovary.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Oxboys.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Oxide.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/PBG.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Phenobarb.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Pixel.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Quinidine.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Rail.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/RatPupWeight.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Relaxin.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Remifentanil.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Soybean.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Spruce.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Tetracycline1.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Tetracycline2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/VarCorr.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Variogram.corExp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Variogram.corGaus.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Variogram.corLin.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Variogram.corRatio.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Variogram.corSpatial.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Variogram.corSpher.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Variogram.default.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Variogram.gls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Variogram.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Variogram.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Wafer.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Wheat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/Wheat2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/allCoef.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/anova.gls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/anova.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/as.matrix.corStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/as.matrix.pdMat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/as.matrix.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/asOneFormula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/asTable.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/augPred.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/balancedGrouped.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/bdf.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/coef.corStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/coef.gnls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/coef.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/coef.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/coef.modelStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/coef.pdMat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/coef.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/coef.varFunc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/collapse.groupedData.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/collapse.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/compareFits.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/comparePred.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/corAR1.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/corARMA.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/corCAR1.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/corClasses.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/corCompSymm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/corExp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/corFactor.corStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/corFactor.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/corGaus.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/corLin.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/corMatrix.corStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/corMatrix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/corMatrix.pdMat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/corMatrix.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/corNatural.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/corRatio.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/corSpatial.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/corSpher.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/corSymm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/ergoStool.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/fdHess.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/fitted.glsStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/fitted.gnlsStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/fitted.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/fitted.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/fitted.lmeStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/fitted.nlmeStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/fixed.effects.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/fixef.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/formula.pdBlocked.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/formula.pdMat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/formula.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/gapply.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/getCovariate.corStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/getCovariate.data.frame.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/getCovariate.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/getCovariate.varFunc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/getCovariateFormula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/getData.gls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/getData.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/getData.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/getData.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/getGroups.corStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/getGroups.data.frame.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/getGroups.gls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/getGroups.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/getGroups.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/getGroups.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/getGroups.varFunc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/getGroupsFormula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/getResponse.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/getResponseFormula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/getVarCov.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/gls-internal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/gls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/glsControl.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/glsObject.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/glsStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/gnls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/gnlsControl.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/gnlsObject.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/gnlsStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/groupedData.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/gsummary.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/intervals.gls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/intervals.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/intervals.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/intervals.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/isBalanced.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/isInitialized.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/lmList.groupedData.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/lme.groupedData.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/lme.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/lmeControl.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/lmeObject.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/lmeStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/logDet.corStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/logDet.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/logDet.pdMat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/logDet.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/logLik.corStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/logLik.glsStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/logLik.gnls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/logLik.gnlsStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/logLik.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/logLik.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/logLik.lmeStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/logLik.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/logLik.varFunc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/model.matrix.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/needUpdate.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/needUpdate.modelStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/nlme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/nlme.nlsList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/nlmeControl.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/nlmeObject.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/nlmeStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/nlsList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/nlsList.selfStart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/pairs.compareFits.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/pairs.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/pairs.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/pdBlocked.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/pdClasses.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/pdCompSymm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/pdConstruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/pdConstruct.pdBlocked.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/pdDiag.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/pdFactor.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/pdFactor.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/pdIdent.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/pdLogChol.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/pdMat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/pdMatrix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/pdMatrix.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/pdNatural.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/pdSymm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/phenoModel.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/plot.ACF.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/plot.Variogram.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/plot.augPred.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/plot.compareFits.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/plot.gls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/plot.intervals.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/plot.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/plot.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/plot.nffGroupedData.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/plot.nfnGroupedData.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/plot.nmGroupedData.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/plot.ranef.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/plot.ranef.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/pooledSD.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/predict.gls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/predict.gnls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/predict.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/predict.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/predict.nlme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/print.summary.pdMat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/print.varFunc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/qqnorm.gls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/qqnorm.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/quinModel.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/random.effects.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/ranef.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/ranef.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/recalc.corStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/recalc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/recalc.modelStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/recalc.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/recalc.varFunc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/residuals.gls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/residuals.glsStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/residuals.gnlsStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/residuals.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/residuals.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/residuals.lmeStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/residuals.nlmeStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/simulate.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/solve.pdMat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/solve.reStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/splitFormula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/summary.corStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/summary.gls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/summary.lmList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/summary.lme.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/summary.modelStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/summary.nlsList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/summary.pdMat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/summary.varFunc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/update.modelStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/update.varFunc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/varClasses.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/varComb.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/varConstPower.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/varExp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/varFixed.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/varFunc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/varIdent.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/varPower.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/varWeights.glsStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/varWeights.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/html/varWeights.lmeStruct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nnet/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nnet/html/class.ind.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nnet/html/multinom.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nnet/html/nnet.Hess.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nnet/html/nnet.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nnet/html/predict.nnet.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nnet/html/which.is.max.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/parallel/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/parallel/html/RngStream.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/parallel/html/children.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/parallel/html/clusterApply.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/parallel/html/detectCores.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/parallel/html/makeCluster.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/parallel/html/mcaffinity.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/parallel/html/mcfork.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/parallel/html/mclapply.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/parallel/html/mcparallel.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/parallel/html/parallel-package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/parallel/html/pvec.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/parallel/html/splitIndices.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/rpart/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/rpart/html/car.test.frame.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/rpart/html/car90.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/rpart/html/cu.summary.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/rpart/html/kyphosis.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/rpart/html/labels.rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/rpart/html/meanvar.rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/rpart/html/na.rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/rpart/html/path.rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/rpart/html/plot.rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/rpart/html/plotcp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/rpart/html/post.rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/rpart/html/predict.rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/rpart/html/print.rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/rpart/html/printcp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/rpart/html/prune.rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/rpart/html/residuals.rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/rpart/html/rpart-internal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/rpart/html/rpart.control.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/rpart/html/rpart.exp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/rpart/html/rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/rpart/html/rpart.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/rpart/html/rsq.rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/rpart/html/snip.rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/rpart/html/solder.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/rpart/html/stagec.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/rpart/html/summary.rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/rpart/html/text.rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/rpart/html/xpred.rpart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/spatial/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/spatial/html/Kaver.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/spatial/html/Kenvl.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/spatial/html/Kfn.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/spatial/html/Psim.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/spatial/html/SSI.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/spatial/html/Strauss.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/spatial/html/anova.trls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/spatial/html/correlogram.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/spatial/html/expcov.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/spatial/html/ppgetregion.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/spatial/html/ppinit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/spatial/html/pplik.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/spatial/html/ppregion.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/spatial/html/predict.trls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/spatial/html/prmat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/spatial/html/semat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/spatial/html/surf.gls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/spatial/html/surf.ls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/spatial/html/trls.influence.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/spatial/html/trmat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/spatial/html/variogram.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/splines/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/splines/html/asVector.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/splines/html/backSpline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/splines/html/bs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/splines/html/interpSpline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/splines/html/ns.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/splines/html/periodicSpline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/splines/html/polySpline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/splines/html/predict.bSpline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/splines/html/predict.bs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/splines/html/splineDesign.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/splines/html/splineKnots.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/splines/html/splineOrder.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/splines/html/splines-package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/splines/html/xyVector.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/AIC.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/ARMAacf.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/ARMAtoMA.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/Beta.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/Binomial.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/Cauchy.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/Chisquare.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/Distributions.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/Exponential.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/Fdist.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/GammaDist.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/Geometric.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/HoltWinters.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/Hypergeometric.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/IQR.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/KalmanLike.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/Logistic.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/Lognormal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/Multinom.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/NLSstAsymptotic.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/NLSstClosestX.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/NLSstLfAsymptote.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/NLSstRtAsymptote.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/NegBinomial.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/Normal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/Poisson.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/SSD.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/SSasymp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/SSasympOff.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/SSasympOrig.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/SSbiexp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/SSfol.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/SSfpl.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/SSgompertz.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/SSlogis.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/SSmicmen.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/SSweibull.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/SignRank.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/StructTS.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/TDist.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/Tukey.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/TukeyHSD.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/Uniform.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/Weibull.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/Wilcoxon.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/acf.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/acf2AR.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/add1.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/addmargins.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/aggregate.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/alias.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/anova.glm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/anova.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/anova.lm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/anova.mlm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/ansari.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/aov.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/approxfun.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/ar.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/ar.ols.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/arima.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/arima.sim.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/arima0.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/as.hclust.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/asOneSidedFormula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/ave.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/bandwidth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/bartlett.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/binom.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/biplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/biplot.princomp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/birthday.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/box.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/cancor.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/case.names.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/checkMFClasses.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/chisq.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/cmdscale.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/coef.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/complete.cases.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/confint.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/constrOptim.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/contrast.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/contrasts.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/convolve.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/cophenetic.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/cor.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/cor.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/cov.wt.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/cpgram.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/cutree.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/decompose.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/delete.response.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/dendrapply.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/dendrogram.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/density.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/deriv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/deviance.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/df.residual.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/diffinv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/dist.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/dummy.coef.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/ecdf.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/eff.aovlist.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/effects.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/embed.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/expand.model.frame.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/extractAIC.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/factanal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/factor.scope.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/family.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/fft.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/filter.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/fisher.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/fitted.values.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/fivenum.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/fligner.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/formula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/formula.nls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/friedman.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/ftable.formula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/ftable.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/getInitial.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/glm.control.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/glm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/glm.summaries.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/hclust.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/heatmap.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/identify.hclust.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/influence.measures.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/integrate.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/interaction.plot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/is.empty.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/isoreg.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/kernapply.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/kernel.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/kmeans.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/kruskal.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/ks.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/ksmooth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/lag.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/lag.plot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/line.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/listof.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/lm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/lm.influence.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/lm.summaries.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/lmfit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/loadings.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/loess.control.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/loess.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/logLik.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/loglin.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/lowess.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/ls.diag.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/ls.print.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/lsfit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/mad.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/mahalanobis.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/make.link.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/makepredictcall.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/manova.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/mantelhaen.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/mauchly.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/mcnemar.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/median.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/medpolish.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/model.extract.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/model.frame.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/model.matrix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/model.tables.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/monthplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/mood.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/na.action.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/na.contiguous.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/na.fail.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/nafns.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/naprint.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/nextn.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/nlm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/nlminb.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/nls.control.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/nls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/nobs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/numericDeriv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/offset.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/oneway.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/optim.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/optimize.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/order.dendrogram.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/p.adjust.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/pairwise.prop.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/pairwise.t.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/pairwise.table.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/pairwise.wilcox.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/plot.HoltWinters.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/plot.acf.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/plot.density.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/plot.isoreg.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/plot.lm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/plot.ppr.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/plot.profile.nls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/plot.spec.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/plot.stepfun.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/plot.ts.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/poisson.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/poly.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/power.anova.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/power.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/power.prop.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/power.t.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/pp.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/ppoints.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/ppr.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/prcomp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/predict.HoltWinters.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/predict.arima.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/predict.glm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/predict.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/predict.lm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/predict.loess.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/predict.nls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/predict.smooth.spline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/preplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/princomp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/print.power.htest.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/print.ts.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/printCoefmat.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/profile.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/profile.nls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/proj.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/prop.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/prop.trend.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/qqnorm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/quade.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/quantile.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/r2dtable.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/rWishart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/read.ftable.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/rect.hclust.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/relevel.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/reorder.dendrogram.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/reorder.factor.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/replications.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/reshape.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/residuals.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/runmed.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/scatter.smooth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/screeplot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/sd.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/se.contrast.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/selfStart.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/setNames.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/shapiro.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/sigma.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/simulate.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/smooth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/smooth.spline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/smoothEnds.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/sortedXyData.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/spec.ar.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/spec.pgram.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/spec.taper.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/spectrum.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/splinefun.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/start.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/stat.anova.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/stats-defunct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/stats-deprecated.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/stats-package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/step.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/stepfun.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/stl.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/stlmethods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/summary.aov.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/summary.glm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/summary.lm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/summary.manova.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/summary.nls.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/terms.formula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/terms.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/terms.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/time.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/toeplitz.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/ts-methods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/ts.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/ts.plot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/ts.union.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/tsSmooth.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/tsdiag.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/tsp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/uniroot.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/update.formula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/update.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/var.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/varimax.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/vcov.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/weighted.mean.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/weighted.residuals.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/weights.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/wilcox.test.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/window.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/xtabs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats/html/zC.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats4/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats4/html/coef-methods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats4/html/confint-methods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats4/html/logLik-methods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats4/html/mle-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats4/html/mle.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats4/html/plot-methods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats4/html/profile-methods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats4/html/profile.mle-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats4/html/show-methods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats4/html/stats4-package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats4/html/summary-methods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats4/html/summary.mle-class.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats4/html/update-methods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/stats4/html/vcov-methods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/Surv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/aareg.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/aeqSurv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/agreg.fit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/aml.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/anova.coxph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/attrassign.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/basehaz.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/bladder.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/cch.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/cgd.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/cgd0.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/cipoisson.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/clogit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/cluster.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/colon.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/cox.zph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/coxph.control.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/coxph.detail.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/coxph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/coxph.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/coxph.wtest.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/dsurvreg.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/finegray.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/kidney.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/lines.survfit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/logLik.coxph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/logan.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/lung.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/mgus.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/mgus2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/model.frame.coxph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/model.matrix.coxph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' 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's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/pbcseq.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/plot.aareg.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/plot.cox.zph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/plot.survfit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/predict.coxph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/predict.survreg.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/print.aareg.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/print.summary.coxph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/print.summary.survexp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/print.summary.survfit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/print.survfit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/pspline.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/pyears.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/quantile.survfit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/ratetable.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/ratetableDate.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/rats.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/rats2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/residuals.coxph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/residuals.survreg.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/retinopathy.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/rhDNase.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/ridge.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/stanford2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/statefig.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/strata.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/summary.aareg.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/summary.coxph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/summary.pyears.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/summary.survexp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/summary.survfit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/survConcordance.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/survSplit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/survdiff.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/survexp.fit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/survexp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/survexp.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/survexp.us.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/survfit.coxph.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/survfit.formula.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/survfit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/survfit.matrix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/survfit.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/survfitcoxph.fit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/survival-internal.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/survobrien.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/survreg.control.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/survreg.distributions.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/survreg.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/survreg.object.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/survregDtest.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/tcut.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/tmerge.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/tobin.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/transplant.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/untangle.specials.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/uspop2.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/survival/html/veteran.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tcltk/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tcltk/html/TclInterface.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tcltk/html/TkCommands.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tcltk/html/TkWidgetcmds.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tcltk/html/TkWidgets.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tcltk/html/tclServiceMode.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tcltk/html/tcltk-defunct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tcltk/html/tcltk-package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tcltk/html/tkProgressBar.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tcltk/html/tkStartGUI.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tcltk/html/tk_choose.dir.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tcltk/html/tk_choose.files.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tcltk/html/tk_messageBox.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tcltk/html/tk_select.list.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tcltk/html/tkpager.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/CRANtools.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/HTMLheader.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/HTMLlinks.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/QC.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/Rcmd.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/Rd2HTML.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/Rd2txt_options.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/RdTextFilter.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/Rdiff.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/Rdindex.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/Rdutils.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/SweaveTeXFilter.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/add_datalist.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/assertCondition.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/bibstyle.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/buildVignette.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/buildVignettes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/charsets.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/checkFF.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/checkMD5sums.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/checkPoFiles.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/checkRd.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/checkRdaFiles.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/checkTnF.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/checkVignettes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/check_packages_in_dir.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/codoc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/compactPDF.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/delimMatch.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/dependsOnPkgs.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/encoded.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/fileutils.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/find_gs_cmd.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/getVignetteInfo.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/loadRdMacros.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/makeLazyLoading.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/make_translations_pkg.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/makevars.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/md5sum.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/package_dependencies.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/package_native_routine_registration_skeleton.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/parseLatex.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/parse_Rd.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/print.via.format.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/pskill.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/psnice.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/read.00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/showNonASCII.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/startDynamicHelp.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/testInstalledPackage.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/texi2dvi.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/toHTML.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/toRd.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/toTitleCase.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/tools-defunct.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/tools-deprecated.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/tools-package.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/undoc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/update_pkg_po.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/vignetteDepends.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/vignetteEngine.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/writePACKAGES.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/tools/html/xgettext.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/00Index.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/BATCH.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/COMPILE.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/INSTALL.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/LINK.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/PkgUtils.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/Question.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/REMOVE.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/RHOME.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/RShowDoc.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/RSiteSearch.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/Rprof.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/Rprofmem.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/Rscript.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/Rtangle.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/RweaveLatex.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/SHLIB.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/Sweave.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/SweaveSyntConv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/SweaveUtils.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/URLencode.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/View.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/adist.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/alarm.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/apropos.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/aregexec.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/askYesNo.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/aspell-utils.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/aspell.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/available.packages.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/bibentry.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/browseEnv.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/browseURL.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/browseVignettes.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/bug.report.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/capture.output.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/changedFiles.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/chooseBioCmirror.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/chooseCRANmirror.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/citEntry.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/citation.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/cite.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/close.socket.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/combn.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/compareVersion.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/contrib.url.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/count.fields.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/create.post.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/data.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/dataentry.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/debugcall.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/debugger.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/demo.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/download.file.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/download.packages.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/edit.data.frame.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/edit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/example.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/file.edit.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/filetest.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/findLineNum.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/fix.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/flush.console.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/format.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/getAnywhere.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/getFromNamespace.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/getParseData.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/getS3method.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/glob2rx.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/globalVariables.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/hasName.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/head.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/help.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/help.request.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/help.search.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/help.start.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/hsearch-utils.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/install.packages.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/installed.packages.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/isS3method.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/isS3stdGen.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/localeToCharset.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/ls_str.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/maintainer.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/make.packages.html.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/make.socket.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/memory.size.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/menu.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/methods.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/mirrorAdmin.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/modifyList.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/news.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/nsl.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/object.size.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/package.skeleton.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/packageDescription.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/packageName.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/packageStatus.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/page.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/person.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/process.events.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/prompt.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/promptData.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/promptPackage.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/rcompgen.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/read.DIF.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/read.fortran.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/read.fwf.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/read.socket.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/read.table.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/recover.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/relist.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/remove.packages.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/removeSource.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/roman.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/rtags.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/savehistory.html + for i in $RPM_BUILD_ROOT/usr/lib64/R/library/*/html/*.html + sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/utils/html/select.list.html + for i in 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/builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/cluster/libs/cluster.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/KernSmooth/libs/KernSmooth.so extracting debug info from /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/KernSmooth/libs/KernSmooth.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nnet/libs/nnet.so extracting debug info from /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nnet/libs/nnet.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/libs/Matrix.so extracting debug info from /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/Matrix/libs/Matrix.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/parallel/libs/parallel.so extracting debug info from /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/parallel/libs/parallel.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/foreign/libs/foreign.so extracting debug info from /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/foreign/libs/foreign.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/libs/nlme.so extracting debug info from /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/nlme/libs/nlme.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/libs/lattice.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/libs/mgcv.so extracting debug info from /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/lattice/libs/lattice.so extracting debug info from /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/library/mgcv/libs/mgcv.so /usr/lib/rpm/sepdebugcrcfix: Updated 35 CRC32s, 0 CRC32s did match. BUILDSTDERR: cpio: src/modules/lapack/SRC/iparam2stage.F: Cannot stat: No such file or directory BUILDSTDERR: 33480 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig BUILDSTDERR: /sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/etc/ld.so.conf: No such file or directory + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 1 + /usr/lib/rpm/brp-python-hardlink + /usr/bin/true Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.tnUmgO Processing files: R-3.5.0-6.fc29.riscv64 Processing files: R-core-3.5.0-6.fc29.riscv64 BUILDSTDERR: warning: Duplicate build-ids /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/bin/Rscript and /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib64/R/bin/Rscript Provides: R-KernSmooth = 2.23.15 R-MASS = 7.3.49 R-Matrix = 1.2.14 R-base = 3.5.0 R-boot = 1.3.20 R-class = 7.3.14 R-cluster = 2.0.7.1 R-codetools = 0.2.15 R-core = 3.5.0-6.fc29 R-core(riscv-64) = 3.5.0-6.fc29 R-datasets = 3.5.0 R-foreign = 0.8.70 R-grDevices = 3.5.0 R-graphics = 3.5.0 R-grid = 3.5.0 R-lattice = 0.20.35 R-methods = 3.5.0 R-mgcv = 1.8.23 R-nlme = 3.1.137 R-nnet = 7.3.12 R-parallel = 3.5.0 R-rpart = 4.1.13 R-spatial = 7.3.11 R-splines = 3.5.0 R-stats = 3.5.0 R-stats4 = 3.5.0 R-survival = 2.41.3 R-tcltk = 3.5.0 R-tools = 3.5.0 R-utils = 3.5.0 config(R-core) = 3.5.0-6.fc29 libR.so()(64bit) libRblas.so()(64bit) libRlapack.so()(64bit) Requires(interp): /bin/sh /bin/sh /bin/sh /bin/sh Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires(post): /bin/sh Requires(preun): /bin/sh Requires(postun): /bin/sh Requires(posttrans): /bin/sh Requires: /bin/bash /bin/sh ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libICE.so.6()(64bit) libR.so()(64bit) libRblas.so()(64bit) libRlapack.so()(64bit) libSM.so.6()(64bit) libX11.so.6()(64bit) libXext.so.6()(64bit) libXmu.so.6()(64bit) libXt.so.6()(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libcairo.so.2()(64bit) libcurl.so.4()(64bit) libdl.so.2()(64bit) libdl.so.2(GLIBC_2.27)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgfortran.so.5()(64bit) libgfortran.so.5(GFORTRAN_8)(64bit) libglib-2.0.so.0()(64bit) libgobject-2.0.so.0()(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libicui18n.so.62()(64bit) libicuuc.so.62()(64bit) libjpeg.so.62()(64bit) libjpeg.so.62(LIBJPEG_6.2)(64bit) liblzma.so.5()(64bit) liblzma.so.5(XZ_5.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libpango-1.0.so.0()(64bit) libpangocairo-1.0.so.0()(64bit) libpcre.so.1()(64bit) libpng16.so.16()(64bit) libpng16.so.16(PNG16_0)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.27)(64bit) libreadline.so.7()(64bit) librt.so.1()(64bit) libtcl8.6.so()(64bit) libtiff.so.5()(64bit) libtiff.so.5(LIBTIFF_4.0)(64bit) libtk8.6.so()(64bit) libtre.so.5()(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Obsoletes: R-Matrix < 0.999375-7 Processing files: R-core-devel-3.5.0-6.fc29.riscv64 Provides: R-Matrix-devel = 1.2.14 R-core-devel = 3.5.0-6.fc29 R-core-devel(riscv-64) = 3.5.0-6.fc29 pkgconfig(libR) = 3.5.0 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config Obsoletes: R-Matrix-devel < 0.999375-7 Processing files: R-devel-3.5.0-6.fc29.riscv64 Processing files: R-java-3.5.0-6.fc29.riscv64 Processing files: R-java-devel-3.5.0-6.fc29.riscv64 Processing files: libRmath-3.5.0-6.fc29.riscv64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.Y1GXjD + umask 022 + cd /builddir/build/BUILD + cd R-3.5.0 + DOCDIR=/builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/share/doc/libRmath + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/share/doc/libRmath + cp -pr doc/COPYING /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/share/doc/libRmath + exit 0 Provides: libRmath = 3.5.0-6.fc29 libRmath(riscv-64) = 3.5.0-6.fc29 libRmath.so()(64bit) Requires(interp): /sbin/ldconfig /sbin/ldconfig Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires(post): /sbin/ldconfig Requires(postun): /sbin/ldconfig Requires: ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libgomp.so.1()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.27)(64bit) rtld(GNU_HASH) Processing files: libRmath-devel-3.5.0-6.fc29.riscv64 Provides: libRmath-devel = 3.5.0-6.fc29 libRmath-devel(riscv-64) = 3.5.0-6.fc29 pkgconfig(libRmath) = 3.5.0 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config Processing files: libRmath-static-3.5.0-6.fc29.riscv64 Provides: libRmath-static = 3.5.0-6.fc29 libRmath-static(riscv-64) = 3.5.0-6.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-debugsource-3.5.0-6.fc29.riscv64 Provides: R-debugsource = 3.5.0-6.fc29 R-debugsource(riscv-64) = 3.5.0-6.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-debuginfo-3.5.0-6.fc29.riscv64 Provides: R-debuginfo = 3.5.0-6.fc29 R-debuginfo(riscv-64) = 3.5.0-6.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-debugsource(riscv-64) = 3.5.0-6.fc29 Processing files: R-core-debuginfo-3.5.0-6.fc29.riscv64 BUILDSTDERR: warning: Duplicate build-ids /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib/debug/usr/bin/Rscript-3.5.0-6.fc29.riscv64.debug and /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64/usr/lib/debug/usr/lib64/R/bin/Rscript-3.5.0-6.fc29.riscv64.debug Provides: R-core-debuginfo = 3.5.0-6.fc29 R-core-debuginfo(riscv-64) = 3.5.0-6.fc29 debuginfo(build-id) = 0545972e70922eb93de71117b1868d9f7ca01196 debuginfo(build-id) = 1688cf392b33fcc3d8465c8812234b660e140de9 debuginfo(build-id) = 22d0e65a79e8f07277fb914d6a3054eed9f2f2af debuginfo(build-id) = 2a92fb433b348c9479ad3506fd519addb2e79c34 debuginfo(build-id) = 2b9c7f76c16b3d0e5e5a91830ab05212a640fa8a debuginfo(build-id) = 32fa0e9e084157d7016af180c0a42a7286d24143 debuginfo(build-id) = 3786e44ea5a1dc159aab6aaea696a0d86ed1138a debuginfo(build-id) = 39d05bff55a007b062e449389b0b471c209a12ae debuginfo(build-id) = 3c0d5227428ac5ca96928a0177b6cd26af132e3d debuginfo(build-id) = 46e56a586374fb42af553592facbd877c81bf23b debuginfo(build-id) = 48c1d71a664a90f91c1f6776d478d75f0e9f2e4c debuginfo(build-id) = 54afa104f78ff2cc935ee77f1b90278cf20192dc debuginfo(build-id) = 66dfca2f7f72157f267347b9aad856566bbbb6db debuginfo(build-id) = 69cb214d3bb846c486fa14df63a881c227d8a5fb debuginfo(build-id) = 708b6d8ddc80d517e61b4da60e374351f2375265 debuginfo(build-id) = 774b74f8819c27edd3cae3f531685c87875e558c debuginfo(build-id) = 7b95e48b2a00b15213a6182016cc7e69c193fcff debuginfo(build-id) = 7ca2b78f4a520791f36943934d3b1be48ebe8cd8 debuginfo(build-id) = 8e84fbefe730af36668f798df8068033b1802531 debuginfo(build-id) = 8f9a6550f1f92611796ffac0a54f2528b71fa2c9 debuginfo(build-id) = 9b555b64e5ef46a42a0287cf9b0d928d9ba838cc debuginfo(build-id) = a9dcf16b0f39387a56e27d50c77af7f141918588 debuginfo(build-id) = aea027b555b5d38b25abf82e6acefdc41cb9e37e debuginfo(build-id) = b836cd38a2f1ba7e2121fb64e366843970837c10 debuginfo(build-id) = c1e8cc7a5b7ecfaa13b314f02a3b075ed62f0983 debuginfo(build-id) = c5c3983acd97da775ddf79fa2083e75cd03284a0 debuginfo(build-id) = c8fbdc8062287f2796bc12e6c0679a6425a2cf56 debuginfo(build-id) = cc2df50696fec94c27390848a220cf8b7be0d256 debuginfo(build-id) = d42ed6038963c11f8c044e4ba7c5e5110e5cd410 debuginfo(build-id) = dafd66b2633cf35c76db035f53a6437f4f47e17a debuginfo(build-id) = f0088cef7eb75b60cbd7dc8684c3da6496420c25 debuginfo(build-id) = f34f7645c4d3eb67b9c8f4cea654bb0fff756762 debuginfo(build-id) = fbfa27f3676bf0d02f3008d0ce0140ebdaed9a8a Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-debugsource(riscv-64) = 3.5.0-6.fc29 Processing files: libRmath-debuginfo-3.5.0-6.fc29.riscv64 Provides: debuginfo(build-id) = 10e3afd5d0c919219edfccb47e2856aa8694142f libRmath-debuginfo = 3.5.0-6.fc29 libRmath-debuginfo(riscv-64) = 3.5.0-6.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-debugsource(riscv-64) = 3.5.0-6.fc29 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64 Wrote: /builddir/build/RPMS/R-3.5.0-6.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/R-core-3.5.0-6.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/R-core-devel-3.5.0-6.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/R-devel-3.5.0-6.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/R-java-3.5.0-6.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/R-java-devel-3.5.0-6.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/libRmath-3.5.0-6.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/libRmath-devel-3.5.0-6.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/libRmath-static-3.5.0-6.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/R-debugsource-3.5.0-6.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/R-debuginfo-3.5.0-6.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/R-core-debuginfo-3.5.0-6.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/libRmath-debuginfo-3.5.0-6.fc29.riscv64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.TYk0Hj + umask 022 + cd /builddir/build/BUILD + cd R-3.5.0 + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-3.5.0-6.fc29.riscv64 + exit 0 Child return code was: 0