Mock Version: 1.4.9 Mock Version: 1.4.9 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/R-wavethresh.spec'], chrootPath='/var/lib/mock/f29-build-18683-10091/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=345600uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/R-wavethresh.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 Wrote: /builddir/build/SRPMS/R-wavethresh-4.6.8-6.fc29.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/R-wavethresh.spec'], chrootPath='/var/lib/mock/f29-build-18683-10091/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=345600uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/R-wavethresh.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Ktnfm4 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf wavethresh + /usr/bin/gzip -dc /builddir/build/SOURCES/wavethresh_4.6.8.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd wavethresh + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.NXANM8 + umask 022 + cd /builddir/build/BUILD + cd wavethresh + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.Yr02dc + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-wavethresh-4.6.8-6.fc29.riscv64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-wavethresh-4.6.8-6.fc29.riscv64 BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/R-wavethresh-4.6.8-6.fc29.riscv64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-wavethresh-4.6.8-6.fc29.riscv64 + cd wavethresh + mkdir -p /builddir/build/BUILDROOT/R-wavethresh-4.6.8-6.fc29.riscv64/usr/lib64/R/library + cd .. + R CMD INSTALL wavethresh -l /builddir/build/BUILDROOT/R-wavethresh-4.6.8-6.fc29.riscv64/usr/lib64/R/library BUILDSTDERR: * installing *source* package 'wavethresh' ... BUILDSTDERR: ** package 'wavethresh' successfully unpacked and MD5 sums checked BUILDSTDERR: ** libs gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c WAVDE.c -o WAVDE.o BUILDSTDERR: WAVDE.c: In function 'DensityCovarianceDecomposeStep': BUILDSTDERR: WAVDE.c:430:9: warning: variable 'step_factor' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int step_factor; /* This should always be 1 for the WAVELET trans*/ BUILDSTDERR: ^~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c cthreb.c -o cthreb.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c functions.c -o functions.o BUILDSTDERR: functions.c: In function 'CWavDE': BUILDSTDERR: functions.c:4069:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: if (*verbose > 0) BUILDSTDERR: ^~ BUILDSTDERR: functions.c:4072:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: twopowjp1 = 1 << (j+1); /* MAN: added parentheses for bit shift */ BUILDSTDERR: ^~~~~~~~~ BUILDSTDERR: functions.c: In function 'createSigma': BUILDSTDERR: functions.c:5274:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: for(i=0;in;i++) BUILDSTDERR: ^~~ BUILDSTDERR: functions.c:5352:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: return(0); BUILDSTDERR: ^~~~~~ BUILDSTDERR: functions.c: In function 'wd3Dstep': BUILDSTDERR: functions.c:9377:14: warning: variable 'tmpf' set but not used [-Wunused-but-set-variable] BUILDSTDERR: { double tmpf; BUILDSTDERR: ^~~~ BUILDSTDERR: functions.c: In function 'multiwd': BUILDSTDERR: functions.c:10254:32: warning: variable 'prevoffsetd' set but not used [-Wunused-but-set-variable] BUILDSTDERR: int level,prevlvl,prevoffsetc,prevoffsetd,index,base,k,l,m,n; BUILDSTDERR: ^~~~~~~~~~~ gcc -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o wavethresh.so WAVDE.o cthreb.o functions.o -L/usr/lib64/R/lib -lR BUILDSTDERR: installing to /builddir/build/BUILDROOT/R-wavethresh-4.6.8-6.fc29.riscv64/usr/lib64/R/library/wavethresh/libs BUILDSTDERR: ** R BUILDSTDERR: ** data BUILDSTDERR: ** inst BUILDSTDERR: ** byte-compile and prepare package for lazy loading BUILDSTDERR: ** help BUILDSTDERR: *** installing help indices converting help for package 'wavethresh' BUILDSTDERR: finding HTML links ... done AutoBasis html AvBasis html AvBasis.wst html AvBasis.wst2D html BAYES.THR html BMdiscr html BabyECG html BabySS html Best1DCols html CWCV html CWavDE html CanUseMoreThanOneColor html Chires5 html Chires6 html ConvertMessage html Crsswav html Cthreshold html DJ.EX html FullWaveletCV html GenW html GetRSSWST html HaarConcat html HaarMA html InvBasis html InvBasis.wp html InvBasis.wst html IsEarly.default html IsEarly html IsEarly.wd html IsPowerOfTwo html LSWsim html LocalSpec html LocalSpec.wd html LocalSpec.wst html MaNoVe html MaNoVe.wp html MaNoVe.wst html PsiJ html PsiJmat html Psiname html ScalingFunction html Shannon.entropy html TOgetthrda1 html TOthreshda1 html TOthreshda2 html WTEnv html WaveletCV html Whistory html Whistory.wst html accessC.mwd html accessC.wd html accessC.wp html accessC.wst html accessC2 html accessD.mwd html accessD html accessD.wd html accessD.wd3D html accessD.wp html accessD.wpst html accessD.wst html accessc html addpkt html av.basis html basisplot.BP html basisplot html basisplot.wp html bestm html c2to4 html checkmyews html cns html compare.filters html compgrot html compress.default html compress.imwd html compress html conbar html convert html convert.wd html convert.wst html cthresh html dclaw html dencvwd html denplot html denproj html denwd html denwr html dof html doppler html draw.default html draw.imwd html draw.imwdc html draw.mwd html draw html draw.wd html draw.wp html draw.wst html drawbox html drawwp.default html ewspec html example.1 html filter.select html find.parameters html first.last.dh html first.last html firstdot html getarrvec html getpacket html getpacket.wp html getpacket.wpst html getpacket.wst html getpacket.wst2D html griddata html guyrot html image.wd html image.wst html imwd.object html imwd html imwdc.object html imwr.imwd html imwr.imwdc html imwr html ipd html ipndacw html irregwd.objects html irregwd html l2norm html lennon html levarr html linfnorm html logabs html lt.to.name html madmad html make.dwwt html makegrid html makewpstDO html makewpstRO html mfilter.select html mfirst.last html modernise html modernise.wd html mpostfilter html mprefilter html mwd.object html mwd html mwr html newsure html nlevelsWT.default html nlevelsWT html nullevels.imwd html nullevels html nullevels.wd html nullevels.wst html numtonv html nv.object html plot.imwd html plot.irregwd html plot.mwd html plot.nvwp html plot.wd html plot.wp html plot.wst html plot.wst2D html plotdenwd html plotpkt html print.BP html print.imwd html print.imwdc html print.mwd html print.nv html print.nvwp html print.w2d html print.w2m html print.wd html print.wd3D html print.wp html print.wpst html print.wpstCL html print.wpstDO html print.wpstRO html print.wst html print.wst2D html putC.mwd html putC html putC.wd html putC.wp html putC.wst html putD.mwd html putD html putD.wd html putD.wd3D html putD.wp html putD.wst html putDwd3Dcheck html putpacket html putpacket.wp html putpacket.wst html putpacket.wst2D html rcov html rfft html rfftinv html rfftwt html rm.det html rmget html rmname html rotateback html rsswav html simchirp html ssq html summary.imwd html summary.imwdc html summary.mwd html summary.wd html summary.wd3D html summary.wp html summary.wpst html summary.wst html summary.wst2D html support html sure html teddy html test.dataCT html threshold.imwd html threshold.imwdc html threshold.irregwd html threshold.mwd html threshold html threshold.wd html threshold.wd3D html threshold.wp html threshold.wst html tpwd html tpwr html uncompress.default html uncompress.imwdc html uncompress html wavegrow html wavethresh-package html wd.dh html wd.int html wd.object html wd html wd3D.object html wd3D html wp.object html wp html wpst html wpst2discr html wpst2m html wpstCLASS html wpstREGR html wr.int html wr.mwd html wr html wr.wd html wr3D html wst.object html wst html wst2D.object html wst2D html wstCV html wstCVl html wvcvlrss html wvmoments html wvrelease html BUILDSTDERR: ** building package indices BUILDSTDERR: ** testing if installed package can be loaded BUILDSTDERR: * DONE (wavethresh) + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-wavethresh-4.6.8-6.fc29.riscv64/usr/lib64/R/library/R.css + /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m -i --build-id-seed 4.6.8-6.fc29 --unique-debug-suffix -4.6.8-6.fc29.riscv64 --unique-debug-src-base R-wavethresh-4.6.8-6.fc29.riscv64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/wavethresh extracting debug info from /builddir/build/BUILDROOT/R-wavethresh-4.6.8-6.fc29.riscv64/usr/lib64/R/library/wavethresh/libs/wavethresh.so /usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. BUILDSTDERR: 708 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig BUILDSTDERR: /sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 1 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.DJL5Dl + umask 022 + cd /builddir/build/BUILD + cd wavethresh + cd .. + /usr/bin/R CMD check wavethresh * using log directory '/builddir/build/BUILD/wavethresh.Rcheck' * using R version 3.5.0 (2018-04-23) * using platform: riscv64-koji-linux-gnu (64-bit) * using session charset: ASCII * checking for file 'wavethresh/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'wavethresh' version '4.6.8' * checking package namespace information ... OK BUILDSTDERR: * checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib: BUILDSTDERR: cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES' BUILDSTDERR: Warning: unable to access index for repository https://bioconductor.org/packages/3.7/bioc/src/contrib: BUILDSTDERR: cannot open URL 'https://bioconductor.org/packages/3.7/bioc/src/contrib/PACKAGES' BUILDSTDERR: Warning: unable to access index for repository https://bioconductor.org/packages/3.7/data/annotation/src/contrib: BUILDSTDERR: cannot open URL 'https://bioconductor.org/packages/3.7/data/annotation/src/contrib/PACKAGES' BUILDSTDERR: Warning: unable to access index for repository https://bioconductor.org/packages/3.7/data/experiment/src/contrib: BUILDSTDERR: cannot open URL 'https://bioconductor.org/packages/3.7/data/experiment/src/contrib/PACKAGES' OK * checking if this is a source package ... WARNING Subdirectory 'wavethresh/src' contains apparent object files/libraries WAVDE.o cthreb.o functions.o wavethresh.so Object files/libraries should not be included in a source package. * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'wavethresh' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking examples ... OK * checking PDF version of manual ... OK * DONE Status: 1 WARNING BUILDSTDERR: See BUILDSTDERR: '/builddir/build/BUILD/wavethresh.Rcheck/00check.log' BUILDSTDERR: for details. + exit 0 Processing files: R-wavethresh-4.6.8-6.fc29.riscv64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.ZKPSnh + umask 022 + cd /builddir/build/BUILD + cd wavethresh + DOCDIR=/builddir/build/BUILDROOT/R-wavethresh-4.6.8-6.fc29.riscv64/usr/share/doc/R-wavethresh + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/R-wavethresh-4.6.8-6.fc29.riscv64/usr/share/doc/R-wavethresh + cp -pr DESCRIPTION /builddir/build/BUILDROOT/R-wavethresh-4.6.8-6.fc29.riscv64/usr/share/doc/R-wavethresh + exit 0 Provides: R-wavethresh = 4.6.8-6.fc29 R-wavethresh(riscv-64) = 4.6.8-6.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) rtld(GNU_HASH) Processing files: R-wavethresh-debugsource-4.6.8-6.fc29.riscv64 Provides: R-wavethresh-debugsource = 4.6.8-6.fc29 R-wavethresh-debugsource(riscv-64) = 4.6.8-6.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-wavethresh-debuginfo-4.6.8-6.fc29.riscv64 Provides: R-wavethresh-debuginfo = 4.6.8-6.fc29 R-wavethresh-debuginfo(riscv-64) = 4.6.8-6.fc29 debuginfo(build-id) = aa203c1e778ed6fb6dc3f06e46ba76eecc5dcfdb Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-wavethresh-debugsource(riscv-64) = 4.6.8-6.fc29 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-wavethresh-4.6.8-6.fc29.riscv64 Wrote: /builddir/build/RPMS/R-wavethresh-4.6.8-6.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/R-wavethresh-debugsource-4.6.8-6.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/R-wavethresh-debuginfo-4.6.8-6.fc29.riscv64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.ZqFkCJ + umask 022 + cd /builddir/build/BUILD + cd wavethresh + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-wavethresh-4.6.8-6.fc29.riscv64 + exit 0 Child return code was: 0