Mock Version: 1.4.9 Mock Version: 1.4.9 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/R-geepack.spec'], chrootPath='/var/lib/mock/f31-build-97738-32972/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'}shell=Falselogger=timeout=345600uid=995gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/R-geepack.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1563926400 Wrote: /builddir/build/SRPMS/R-geepack-1.2.1-7.fc31.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/R-geepack.spec'], chrootPath='/var/lib/mock/f31-build-97738-32972/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'}shell=Falselogger=timeout=345600uid=995gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/R-geepack.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1563926400 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.9x96e1 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf geepack + /usr/bin/mkdir -p geepack + cd geepack + /usr/bin/gzip -dc /builddir/build/SOURCES/geepack_1.2-1.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + for file in geepack/inst/doc/geepack-manual.Rnw + iconv --from=latin1 --to=UTF-8 geepack/inst/doc/geepack-manual.Rnw + touch -r geepack/inst/doc/geepack-manual.Rnw geepack/inst/doc/geepack-manual.Rnw.new + sed 's|\r||g' geepack/inst/doc/geepack-manual.Rnw.new + touch -r geepack/inst/doc/geepack-manual.Rnw.new geepack/inst/doc/geepack-manual.Rnw + rm geepack/inst/doc/geepack-manual.Rnw.new + pushd geepack + chmod -x ChangeLog DESCRIPTION NAMESPACE inst/CITATION + chmod -x inst/CITATION inst/doc/geepack-manual.R inst/doc/geepack-manual.Rnw inst/doc/geepack-manual.pdf inst/include/famstr.h inst/include/gee2.h inst/include/geese.h inst/include/geesubs.h inst/include/inter.h inst/include/ordgee.h inst/include/param.h inst/include/tntsupp.h inst/include/utils.h inst/include/tnt/cholesky.h inst/include/tnt/cmat.h inst/include/tnt/fcscmat.h inst/include/tnt/fmat.h inst/include/tnt/fortran.h inst/include/tnt/fspvec.h inst/include/tnt/index.h inst/include/tnt/lapack.h inst/include/tnt/lu.h inst/include/tnt/qr.h inst/include/tnt/region1d.h inst/include/tnt/region2d.h inst/include/tnt/stopwatch.h inst/include/tnt/subscript.h inst/include/tnt/tnt.h inst/include/tnt/tntmath.h inst/include/tnt/tntreqs.h inst/include/tnt/transv.h inst/include/tnt/triang.h inst/include/tnt/trisolve.h inst/include/tnt/vec.h inst/include/tnt/vecadaptor.h inst/include/tnt/version.h + chmod -x data/dietox.txt.gz data/koch.txt.gz data/ohio.txt.gz data/respdis.txt.gz data/respiratory.txt.gz data/seizure.txt.gz data/sitka89.txt.gz data/spruce.txt.gz man/DATA-dietox.Rd man/DATA-koch.Rd man/DATA-ohio.Rd man/DATA-respdis.Rd man/DATA-respiratory.Rd man/DATA-seizure.Rd man/DATA-sitka89.Rd man/DATA-spruce.Rd man/SHDgeese-internal.Rd man/compCoef.Rd man/fixed2Zcor.Rd man/geeglm.Rd man/geese-internal.Rd man/geese.Rd man/geese.control.Rd man/genZcor.Rd man/ordgee.Rd man/relRisk.Rd R/fixed2Zcor.R R/geeglm-anova.R R/geeglm.R R/geese.R R/internal.R R/ordgee.R R/rrr.R R/summary.R R/zzz.R src/Makevars src/famstr.cc src/gee2.cc src/geesubs.cc src/inter.cc src/ordgee.cc src/param.cc src/utils.cc vignettes/geepack-manual.Rnw + popd + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 ~/build/BUILD/geepack/geepack ~/build/BUILD/geepack ~/build/BUILD/geepack Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.DCSUd3 + umask 022 + cd /builddir/build/BUILD + cd geepack + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.QQpFb0 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-geepack-1.2.1-7.fc31.riscv64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-geepack-1.2.1-7.fc31.riscv64 BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/R-geepack-1.2.1-7.fc31.riscv64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-geepack-1.2.1-7.fc31.riscv64 + cd geepack + mkdir -p /builddir/build/BUILDROOT/R-geepack-1.2.1-7.fc31.riscv64/usr/lib64/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-geepack-1.2.1-7.fc31.riscv64/usr/lib64/R/library geepack BUILDSTDERR: * installing *source* package 'geepack' ... BUILDSTDERR: ** using staged installation BUILDSTDERR: ** libs BUILDSTDERR: installing to /builddir/build/BUILDROOT/R-geepack-1.2.1-7.fc31.riscv64/usr/lib64/R/library/00LOCK-geepack/00new/geepack/libs BUILDSTDERR: ** R BUILDSTDERR: ** data BUILDSTDERR: ** inst BUILDSTDERR: ** byte-compile and prepare package for lazy loading BUILDSTDERR: ** help BUILDSTDERR: *** installing help indices BUILDSTDERR: finding HTML links ... done file 'inst/doc/geepack-manual.Rnw' has the wrong MD5 checksum g++ -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I../inst/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c famstr.cc -o famstr.o g++ -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I../inst/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c gee2.cc -o gee2.o g++ -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I../inst/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c geesubs.cc -o geesubs.o g++ -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I../inst/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c inter.cc -o inter.o g++ -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I../inst/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c ordgee.cc -o ordgee.o g++ -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I../inst/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c param.cc -o param.o g++ -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I../inst/include -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c utils.cc -o utils.o g++ -std=gnu++11 -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o geepack.so famstr.o gee2.o geesubs.o inter.o ordgee.o param.o utils.o -L/usr/lib64/R/lib -lR converting help for package 'geepack' DATA-dietox html DATA-koch html DATA-ohio html DATA-respdis html DATA-respiratory html DATA-seizure html DATA-sitka89 html DATA-spruce html SHDgeese-internal html compCoef html fixed2Zcor html geeglm html geese-internal html geese html geese.control html BUILDSTDERR: genZcor ** building package indices BUILDSTDERR: ** installing vignettes BUILDSTDERR: ** testing if installed package can be loaded from temporary location BUILDSTDERR: ** checking absolute paths in shared objects and dynamic libraries BUILDSTDERR: ** testing if installed package can be loaded from final location BUILDSTDERR: ** testing if installed package keeps a record of temporary installation path BUILDSTDERR: * DONE (geepack) + test -d geepack/src + cd geepack/src + rm -f famstr.o gee2.o geesubs.o inter.o ordgee.o param.o utils.o geepack.so + rm -f /builddir/build/BUILDROOT/R-geepack-1.2.1-7.fc31.riscv64/usr/lib64/R/library/R.css + /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m -i --build-id-seed 1.2.1-7.fc31 --unique-debug-suffix -1.2.1-7.fc31.riscv64 --unique-debug-src-base R-geepack-1.2.1-7.fc31.riscv64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/geepack BUILDSTDERR: 334 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-python-bytecompile /usr/bin/python 1 0 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs html ordgee html relRisk html explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/R-geepack-1.2.1-7.fc31.riscv64/usr/lib64/R/library/geepack/libs/geepack.so extracting debug info from /builddir/build/BUILDROOT/R-geepack-1.2.1-7.fc31.riscv64/usr/lib64/R/library/geepack/libs/geepack.so original debug info size: 2156kB, size after compression: 1972kB /usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.xHIlj2 + umask 022 + cd /builddir/build/BUILD + cd geepack + /usr/bin/R CMD check geepack * using log directory '/builddir/build/BUILD/geepack/geepack.Rcheck' * using R version 3.6.1 (2019-07-05) * using platform: riscv64-redhat-linux-gnu (64-bit) * using session charset: ASCII * checking for file 'geepack/DESCRIPTION' ... OK * this is package 'geepack' version '1.2-1' * package encoding: latin1 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'geepack' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... WARNING Warning in Sys.setlocale("LC_CTYPE", "en_US") : OS reports request to set locale to "en_US" cannot be honored * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... NOTE Found the following sources/headers with CR or CRLF line endings: inst/include/famstr.h inst/include/gee2.h inst/include/geese.h inst/include/geesubs.h inst/include/inter.h inst/include/ordgee.h inst/include/param.h inst/include/tnt/cholesky.h inst/include/tnt/cmat.h inst/include/tnt/fcscmat.h inst/include/tnt/fmat.h inst/include/tnt/fortran.h inst/include/tnt/fspvec.h inst/include/tnt/index.h inst/include/tnt/lapack.h inst/include/tnt/lu.h inst/include/tnt/qr.h inst/include/tnt/region1d.h inst/include/tnt/region2d.h inst/include/tnt/stopwatch.h inst/include/tnt/subscript.h inst/include/tnt/tnt.h inst/include/tnt/tntmath.h inst/include/tnt/tntreqs.h inst/include/tnt/transv.h inst/include/tnt/triang.h inst/include/tnt/trisolve.h inst/include/tnt/vec.h inst/include/tnt/vecadaptor.h inst/include/tnt/version.h inst/include/tntsupp.h inst/include/utils.h Some Unix compilers require LF line endings. * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking compiled code ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... WARNING checking a package with encoding 'latin1' in an ASCII locale * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... 'geepack-manual.Rnw'using 'latin1'... OK OK BUILDSTDERR: * checking re-building of vign BUILDSTDERR: See BUILDSTDERR: '/builddir/build/BUILD/geepack/geepack.Rcheck/00check.log' BUILDSTDERR: for details. + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 ette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 2 WARNINGs, 1 NOTE Processing files: R-geepack-1.2.1-7.fc31.riscv64 Provides: R(geepack) = 1.2-1 R-geepack = 1.2.1-7.fc31 R-geepack(riscv-64) = 1.2.1-7.fc31 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: R-core ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: R-geepack-devel-1.2.1-7.fc31.riscv64 Provides: R-geepack-devel = 1.2.1-7.fc31 R-geepack-devel(riscv-64) = 1.2.1-7.fc31 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-geepack-debugsource-1.2.1-7.fc31.riscv64 Provides: R-geepack-debugsource = 1.2.1-7.fc31 R-geepack-debugsource(riscv-64) = 1.2.1-7.fc31 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-geepack-debuginfo-1.2.1-7.fc31.riscv64 Provides: R-geepack-debuginfo = 1.2.1-7.fc31 R-geepack-debuginfo(riscv-64) = 1.2.1-7.fc31 debuginfo(build-id) = 625663248a7607be12a8f716406cbcf695d8d1e7 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-geepack-debugsource(riscv-64) = 1.2.1-7.fc31 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-geepack-1.2.1-7.fc31.riscv64 Wrote: /builddir/build/RPMS/R-geepack-devel-1.2.1-7.fc31.riscv64.rpm Wrote: /builddir/build/RPMS/R-geepack-debugsource-1.2.1-7.fc31.riscv64.rpm Wrote: /builddir/build/RPMS/R-geepack-1.2.1-7.fc31.riscv64.rpm Wrote: /builddir/build/RPMS/R-geepack-debuginfo-1.2.1-7.fc31.riscv64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.ZyPhG1 + umask 022 + cd /builddir/build/BUILD + cd geepack + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-geepack-1.2.1-7.fc31.riscv64 + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 Child return code was: 0