Mock Version: 1.4.9 Mock Version: 1.4.9 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/R-S4Vectors.spec'], chrootPath='/var/lib/mock/f29-build-4589-1074/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'}shell=Falselogger=timeout=345600uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/R-S4Vectors.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'} and shell False Building target platforms: riscv64 Building for target riscv64 Wrote: /builddir/build/SRPMS/R-S4Vectors-0.18.2-1.fc29.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/R-S4Vectors.spec'], chrootPath='/var/lib/mock/f29-build-4589-1074/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'}shell=Falselogger=timeout=345600uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/R-S4Vectors.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'} and shell False Building target platforms: riscv64 Building for target riscv64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.wm7O65 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf S4Vectors + /usr/bin/mkdir -p S4Vectors + cd S4Vectors + /usr/bin/gzip -dc /builddir/build/SOURCES/S4Vectors_0.18.2.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.0fQ2L1 + umask 022 + cd /builddir/build/BUILD + cd S4Vectors + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.iBOZo8 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-S4Vectors-0.18.2-1.fc29.riscv64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-S4Vectors-0.18.2-1.fc29.riscv64 BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/R-S4Vectors-0.18.2-1.fc29.riscv64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-S4Vectors-0.18.2-1.fc29.riscv64 + cd S4Vectors + mkdir -p /builddir/build/BUILDROOT/R-S4Vectors-0.18.2-1.fc29.riscv64/usr/lib64/R/library + R CMD INSTALL -l /builddir/build/BUILDROOT/R-S4Vectors-0.18.2-1.fc29.riscv64/usr/lib64/R/library S4Vectors BUILDSTDERR: * installing *source* package 'S4Vectors' ... BUILDSTDERR: ** libs gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c AEbufs.c -o AEbufs.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c DataFrame_class.c -o DataFrame_class.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c Hits_class.c -o Hits_class.o BUILDSTDERR: In file included from /usr/include/R/Rdefines.h:40, BUILDSTDERR: from ../inst/include/S4Vectors_defines.h:18, BUILDSTDERR: from S4Vectors.h:1, BUILDSTDERR: from Hits_class.c:4: BUILDSTDERR: Hits_class.c: In function 'Hits_new': BUILDSTDERR: /usr/include/R/Rinternals.h:1348:20: warning: 'revmap' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: #define defineVar Rf_defineVar BUILDSTDERR: ^~~~~~~~~~~~ BUILDSTDERR: Hits_class.c:216:12: note: 'revmap' was declared here BUILDSTDERR: SEXP ans, revmap, symbol; BUILDSTDERR: ^~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c LLint_class.c -o LLint_class.o BUILDSTDERR: LLint_class.c: In function 'llints_summary': BUILDSTDERR: LLint_class.c:752:16: warning: 'res' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: long long int res, in_elt; BUILDSTDERR: ^~~ gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c List_class.c -o List_class.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c R_init_S4Vectors.c -o R_init_S4Vectors.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c Rle_class.c -o Rle_class.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c Rle_utils.c -o Rle_utils.o BUILDSTDERR: Rle_utils.c: In function 'Rle_real_runq': BUILDSTDERR: Rle_utils.c:701:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: if (count_na != 0) BUILDSTDERR: ^~ BUILDSTDERR: Rle_utils.c:703:6: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: q_index = roundingScale(window_len_na, BUILDSTDERR: ^~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c SEXP_utils.c -o SEXP_utils.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c SimpleList_class.c -o SimpleList_class.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c anyMissing.c -o anyMissing.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c character_utils.c -o character_utils.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c eval_utils.c -o eval_utils.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c hash_utils.c -o hash_utils.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c integer_utils.c -o integer_utils.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c logical_utils.c -o logical_utils.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c map_ranges_to_runs.c -o map_ranges_to_runs.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c safe_arithm.c -o safe_arithm.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c sort_utils.c -o sort_utils.o BUILDSTDERR: sort_utils.c:263:13: warning: 'sort_uchar_array' defined but not used [-Wunused-function] BUILDSTDERR: static void sort_uchar_array(unsigned char *x, int nelt, int desc) BUILDSTDERR: ^~~~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c subsetting_utils.c -o subsetting_utils.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c vector_utils.c -o vector_utils.o gcc -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o S4Vectors.so AEbufs.o DataFrame_class.o Hits_class.o LLint_class.o List_class.o R_init_S4Vectors.o Rle_class.o Rle_utils.o SEXP_utils.o SimpleList_class.o anyMissing.o character_utils.o eval_utils.o hash_utils.o integer_utils.o logical_utils.o map_ranges_to_runs.o safe_arithm.o sort_utils.o subsetting_utils.o vector_utils.o -L/usr/lib64/R/lib -lR BUILDSTDERR: installing to /builddir/build/BUILDROOT/R-S4Vectors-0.18.2-1.fc29.riscv64/usr/lib64/R/library/S4Vectors/libs BUILDSTDERR: ** R BUILDSTDERR: ** inst BUILDSTDERR: ** byte-compile and prepare package for lazy loading BUILDSTDERR: Creating a generic function for 'complete.cases' from package 'stats' in package 'S4Vectors' BUILDSTDERR: Creating a new generic function for 'expand.grid' in package 'S4Vectors' BUILDSTDERR: Creating a generic function for '%in%' from package 'base' in package 'S4Vectors' BUILDSTDERR: Creating a new generic function for 'findMatches' in package 'S4Vectors' BUILDSTDERR: Creating a generic function for 'setequal' from package 'base' in package 'S4Vectors' BUILDSTDERR: Creating a generic function for 'as.factor' from package 'base' in package 'S4Vectors' BUILDSTDERR: Creating a generic function for 'tabulate' from package 'base' in package 'S4Vectors' BUILDSTDERR: Creating a generic function for 'cov' from package 'stats' in package 'S4Vectors' BUILDSTDERR: Creating a generic function for 'cor' from package 'stats' in package 'S4Vectors' BUILDSTDERR: Creating a generic function for 'smoothEnds' from package 'stats' in package 'S4Vectors' BUILDSTDERR: Creating a generic function for 'runmed' from package 'stats' in package 'S4Vectors' BUILDSTDERR: Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors' BUILDSTDERR: Creating a generic function for 'substr' from package 'base' in package 'S4Vectors' BUILDSTDERR: Creating a generic function for 'substring' from package 'base' in package 'S4Vectors' BUILDSTDERR: Creating a generic function for 'chartr' from package 'base' in package 'S4Vectors' BUILDSTDERR: Creating a generic function for 'tolower' from package 'base' in package 'S4Vectors' BUILDSTDERR: Creating a generic function for 'toupper' from package 'base' in package 'S4Vectors' BUILDSTDERR: Creating a generic function for 'sub' from package 'base' in package 'S4Vectors' BUILDSTDERR: Creating a generic function for 'gsub' from package 'base' in package 'S4Vectors' BUILDSTDERR: in method for 'coerce' with signature '"data.table","DataFrame"': no definition for class "data.table" BUILDSTDERR: ** help BUILDSTDERR: *** installing help indices converting help for package 'S4Vectors' BUILDSTDERR: finding HTML links ... done Annotated-class html DataFrame-class html DataTable-class html FilterMatrix-class html FilterRules-class html Hits-class html Rd warning: /builddir/build/BUILD/S4Vectors/S4Vectors/man/Hits-class.Rd:177: file link '[' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/S4Vectors/S4Vectors/man/Hits-class.Rd:188: file link 'c' in package 'S4Vectors' does not exist and so has been treated as a topic Hits-comparison html Hits-setops html Rd warning: /builddir/build/BUILD/S4Vectors/S4Vectors/man/Hits-setops.Rd:47: file link 'union' in package 'BiocGenerics' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/S4Vectors/S4Vectors/man/Hits-setops.Rd:48: file link 'intersect' in package 'BiocGenerics' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/S4Vectors/S4Vectors/man/Hits-setops.Rd:49: file link 'setdiff' in package 'BiocGenerics' does not exist and so has been treated as a topic HitsList-class html LLint-class html List-class html List-utils html Rd warning: /builddir/build/BUILD/S4Vectors/S4Vectors/man/List-utils.Rd:94: file link 'sapply' in package 'base' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/S4Vectors/S4Vectors/man/List-utils.Rd:105: file link 'Reduce' in package 'base' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/S4Vectors/S4Vectors/man/List-utils.Rd:115: file link 'rbind' in package 'base' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/S4Vectors/S4Vectors/man/List-utils.Rd:127: file link 'sapply' in package 'base' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/S4Vectors/S4Vectors/man/List-utils.Rd:156: file link 'Reduce' in package 'base' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/S4Vectors/S4Vectors/man/List-utils.Rd:189: file link 'Reduce' in package 'base' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/S4Vectors/S4Vectors/man/List-utils.Rd:192: file link 'within' in package 'base' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/S4Vectors/S4Vectors/man/List-utils.Rd:207: file link 'Reduce' in package 'base' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/S4Vectors/S4Vectors/man/List-utils.Rd:210: file link 'within' in package 'base' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/S4Vectors/S4Vectors/man/List-utils.Rd:214: file link 'rbind' in package 'base' does not exist and so has been treated as a topic Pairs-class html Rle-class html Rd warning: /builddir/build/BUILD/S4Vectors/S4Vectors/man/Rle-class.Rd:221: file link 'c' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/S4Vectors/S4Vectors/man/Rle-class.Rd:363: file link 'aggregate' in package 'S4Vectors' does not exist and so has been treated as a topic Rle-runstat html Rle-utils html S4Vectors-internals html SimpleList-class html Vector-class html Vector-comparison html Vector-merge html Vector-setops html Rd warning: /builddir/build/BUILD/S4Vectors/S4Vectors/man/Vector-setops.Rd:90: file link 'union' in package 'BiocGenerics' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/S4Vectors/S4Vectors/man/Vector-setops.Rd:91: file link 'intersect' in package 'BiocGenerics' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/S4Vectors/S4Vectors/man/Vector-setops.Rd:92: file link 'setdiff' in package 'BiocGenerics' does not exist and so has been treated as a topic aggregate-methods html Rd warning: /builddir/build/BUILD/S4Vectors/S4Vectors/man/aggregate-methods.Rd:38: file link 'end' in package 'BiocGenerics' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/S4Vectors/S4Vectors/man/aggregate-methods.Rd:38: file link 'width' in package 'BiocGenerics' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/S4Vectors/S4Vectors/man/aggregate-methods.Rd:96: file link 'end' in package 'BiocGenerics' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/S4Vectors/S4Vectors/man/aggregate-methods.Rd:97: file link 'width' in package 'BiocGenerics' does not exist and so has been treated as a topic character-utils html expand-methods html integer-utils html isSorted html shiftApply-methods html Rd warning: /builddir/build/BUILD/S4Vectors/S4Vectors/man/shiftApply-methods.Rd:44: file link 'window' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/S4Vectors/S4Vectors/man/shiftApply-methods.Rd:45: file link 'aggregate' in package 'S4Vectors' does not exist and so has been treated as a topic show-utils html split-methods html subsetting-utils html zip-methods html BUILDSTDERR: ** building package indices BUILDSTDERR: ** installing vignettes BUILDSTDERR: ** testing if installed package can be loaded BUILDSTDERR: * DONE (S4Vectors) + test -d S4Vectors/src + cd S4Vectors/src + rm -f AEbufs.o DataFrame_class.o Hits_class.o LLint_class.o List_class.o R_init_S4Vectors.o Rle_class.o Rle_utils.o SEXP_utils.o SimpleList_class.o anyMissing.o character_utils.o eval_utils.o hash_utils.o integer_utils.o logical_utils.o map_ranges_to_runs.o safe_arithm.o sort_utils.o subsetting_utils.o vector_utils.o S4Vectors.so + rm -f /builddir/build/BUILDROOT/R-S4Vectors-0.18.2-1.fc29.riscv64/usr/lib64/R/library/R.css + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig BUILDSTDERR: /sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip /usr/bin/strip + /usr/lib/rpm/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.6VZmi9 Processing files: R-S4Vectors-0.18.2-1.fc29.riscv64 Provides: R-S4Vectors = 0.18.2-1.fc29 R-S4Vectors(riscv-64) = 0.18.2-1.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) rtld(GNU_HASH) Processing files: R-S4Vectors-devel-0.18.2-1.fc29.riscv64 Provides: R-S4Vectors-devel = 0.18.2-1.fc29 R-S4Vectors-devel(riscv-64) = 0.18.2-1.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-S4Vectors-0.18.2-1.fc29.riscv64 Wrote: /builddir/build/RPMS/R-S4Vectors-0.18.2-1.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/R-S4Vectors-devel-0.18.2-1.fc29.riscv64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.DufceX + umask 022 + cd /builddir/build/BUILD + cd S4Vectors + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-S4Vectors-0.18.2-1.fc29.riscv64 + exit 0 Child return code was: 0