Mock Version: 1.4.13 Mock Version: 1.4.13 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/R-Rsolid.spec'], chrootPath='/var/lib/mock/f30-build-39135-22433/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=345600uid=995gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/R-Rsolid.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 Wrote: /builddir/build/SRPMS/R-Rsolid-0.9.31-25.fc30.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/R-Rsolid.spec'], chrootPath='/var/lib/mock/f30-build-39135-22433/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=345600uid=995gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/R-Rsolid.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.C4a57a + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf Rsolid + /usr/bin/mkdir -p Rsolid + cd Rsolid + /usr/bin/gzip -dc /builddir/build/SOURCES/Rsolid_0.9-31.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (R-Rsolid-R3.patch):' Patch #0 (R-Rsolid-R3.patch): + /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .fixed --fuzz=0 patching file Rsolid/NAMESPACE patching file Rsolid/src/util.c + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.Ts79h5 + umask 022 + cd /builddir/build/BUILD + cd Rsolid + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.apnabc + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-Rsolid-0.9.31-25.fc30.riscv64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-Rsolid-0.9.31-25.fc30.riscv64 BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/R-Rsolid-0.9.31-25.fc30.riscv64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-Rsolid-0.9.31-25.fc30.riscv64 + cd Rsolid + mkdir -p /builddir/build/BUILDROOT/R-Rsolid-0.9.31-25.fc30.riscv64/usr/lib64/R/library + R CMD INSTALL Rsolid --configure-args=--with-hdf5=/usr -l /builddir/build/BUILDROOT/R-Rsolid-0.9.31-25.fc30.riscv64/usr/lib64/R/library BUILDSTDERR: * installing *source* package 'Rsolid' ... checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking how to run the C preprocessor... gcc -E checking for egrep... grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking hdf5.h usability... yes checking hdf5.h presence... yes checking for hdf5.h... yes configure: creating ./config.status config.status: creating src/Makevars BUILDSTDERR: ** libs gcc -I"/usr/include/R" -DNDEBUG -I/usr/include -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c Rdriver.c -o Rdriver.o BUILDSTDERR: Rdriver.c: In function 'rdriver': BUILDSTDERR: Rdriver.c:271:8: warning: unused variable 'p_yxloc' [-Wunused-variable] BUILDSTDERR: SEXP p_yxloc; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: Rdriver.c:270:8: warning: unused variable 'p_intensities' [-Wunused-variable] BUILDSTDERR: SEXP p_intensities; BUILDSTDERR: ^~~~~~~~~~~~~ BUILDSTDERR: Rdriver.c:269:8: warning: unused variable 'ligation_names' [-Wunused-variable] BUILDSTDERR: SEXP ligation_names; BUILDSTDERR: ^~~~~~~~~~~~~~ BUILDSTDERR: Rdriver.c:268:8: warning: unused variable 'primer_names' [-Wunused-variable] BUILDSTDERR: SEXP primer_names; BUILDSTDERR: ^~~~~~~~~~~~ BUILDSTDERR: Rdriver.c:266:15: warning: unused variable 'i' [-Wunused-variable] BUILDSTDERR: int status, i; BUILDSTDERR: ^ BUILDSTDERR: Rdriver.c:264:13: warning: unused variable 'panel_info' [-Wunused-variable] BUILDSTDERR: panelInfo panel_info; BUILDSTDERR: ^~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I/usr/include -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c reader.c -o reader.o BUILDSTDERR: reader.c: In function 'ligationIter_data': BUILDSTDERR: reader.c:315:7: warning: unused variable 'offset' [-Wunused-variable] BUILDSTDERR: int offset; BUILDSTDERR: ^~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I/usr/include -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c reader_util.c -o reader_util.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/include -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util.c -o util.o BUILDSTDERR: util.c: In function 'callBases': BUILDSTDERR: util.c:163:41: warning: unused variable 'dscore' [-Wunused-variable] BUILDSTDERR: double *input=REAL(mat), dtmp, dtmp2, dscore; BUILDSTDERR: ^~~~~~ BUILDSTDERR: util.c:169:19: warning: 'tmpscore' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: char *tmpchar, *tmpscore; BUILDSTDERR: ^~~~~~~~ gcc -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o Rsolid.so Rdriver.o reader.o reader_util.o util.o -L/usr/lib -lhdf5 -L/usr/lib64/R/lib -lR BUILDSTDERR: installing to /builddir/build/BUILDROOT/R-Rsolid-0.9.31-25.fc30.riscv64/usr/lib64/R/library/Rsolid/libs BUILDSTDERR: ** R BUILDSTDERR: ** data BUILDSTDERR: ** inst BUILDSTDERR: ** byte-compile and prepare package for lazy loading BUILDSTDERR: ** help BUILDSTDERR: *** installing help indices converting help for package 'Rsolid' BUILDSTDERR: finding HTML links ... done BUILDSTDERR: Rsolid html BUILDSTDERR: finding level-2 HTML links ... done Rd warning: /builddir/build/BUILD/Rsolid/Rsolid/man/Rsolid.Rd:44: missing link 'snow' Rd warning: /builddir/build/BUILD/Rsolid/Rsolid/man/Rsolid.Rd:45: missing link 'Rmpi' BUILDSTDERR: ** building package indices BUILDSTDERR: ** testing if installed package can be loaded BUILDSTDERR: * DONE (Rsolid) + test -d Rsolid/src + cd Rsolid/src + rm -f Rdriver.o reader.o reader_util.o util.o Rsolid.so + rm -rf /builddir/build/BUILDROOT/R-Rsolid-0.9.31-25.fc30.riscv64/usr/lib64/R/library/R.css + rm -rf Rsolid/src/hdf5-1.8.3 + rm -rf Rsolid/config.status + rm -rf Rsolid/configure + /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m -i --build-id-seed 0.9.31-25.fc30 --unique-debug-suffix -0.9.31-25.fc30.riscv64 --unique-debug-src-base R-Rsolid-0.9.31-25.fc30.riscv64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/Rsolid explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/R-Rsolid-0.9.31-25.fc30.riscv64/usr/lib64/R/library/Rsolid/libs/Rsolid.so extracting debug info from /builddir/build/BUILDROOT/R-Rsolid-0.9.31-25.fc30.riscv64/usr/lib64/R/library/Rsolid/libs/Rsolid.so /usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. BUILDSTDERR: 72 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig BUILDSTDERR: /sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 0 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.qq0j87 Processing files: R-Rsolid-0.9.31-25.fc30.riscv64 Provides: R-Rsolid = 0.9.31-25.fc30 R-Rsolid(riscv-64) = 0.9.31-25.fc30 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libhdf5.so.10()(64bit) rtld(GNU_HASH) Processing files: R-Rsolid-devel-0.9.31-25.fc30.riscv64 Provides: R-Rsolid-devel = 0.9.31-25.fc30 R-Rsolid-devel(riscv-64) = 0.9.31-25.fc30 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-Rsolid-debugsource-0.9.31-25.fc30.riscv64 Provides: R-Rsolid-debugsource = 0.9.31-25.fc30 R-Rsolid-debugsource(riscv-64) = 0.9.31-25.fc30 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-Rsolid-debuginfo-0.9.31-25.fc30.riscv64 Provides: R-Rsolid-debuginfo = 0.9.31-25.fc30 R-Rsolid-debuginfo(riscv-64) = 0.9.31-25.fc30 debuginfo(build-id) = 839f4227de1af1a1e69c4dda318429da69f40581 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-Rsolid-debugsource(riscv-64) = 0.9.31-25.fc30 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-Rsolid-0.9.31-25.fc30.riscv64 Wrote: /builddir/build/RPMS/R-Rsolid-0.9.31-25.fc30.riscv64.rpm Wrote: /builddir/build/RPMS/R-Rsolid-devel-0.9.31-25.fc30.riscv64.rpm Wrote: /builddir/build/RPMS/R-Rsolid-debugsource-0.9.31-25.fc30.riscv64.rpm Wrote: /builddir/build/RPMS/R-Rsolid-debuginfo-0.9.31-25.fc30.riscv64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.pqWDn5 + umask 022 + cd /builddir/build/BUILD + cd Rsolid + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-Rsolid-0.9.31-25.fc30.riscv64 + exit 0 Child return code was: 0