Mock Version: 1.4.9
Mock Version: 1.4.9
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/R-Rsolid.spec'], chrootPath='/var/lib/mock/f29-build-8870-3810/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x2001fd77b8>timeout=345600uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/R-Rsolid.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'} and shell False
Building target platforms: riscv64
Building for target riscv64
Wrote: /builddir/build/SRPMS/R-Rsolid-0.9.31-24.fc29.src.rpm
Child return code was: 0
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/R-Rsolid.spec'], chrootPath='/var/lib/mock/f29-build-8870-3810/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x2001fd77b8>timeout=345600uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/R-Rsolid.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8', 'http_proxy': 'http://192.168.0.254:3128', 'https_proxy': 'http://192.168.0.254:3128'} and shell False
Building target platforms: riscv64
Building for target riscv64
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.OrJ52T
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf Rsolid
+ /usr/bin/mkdir -p Rsolid
+ cd Rsolid
+ /usr/bin/gzip -dc /builddir/build/SOURCES/Rsolid_0.9-31.tar.gz
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ echo 'Patch #0 (R-Rsolid-R3.patch):'
Patch #0 (R-Rsolid-R3.patch):
+ /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .fixed --fuzz=0
patching file Rsolid/NAMESPACE
patching file Rsolid/src/util.c
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.YZw5Ck
+ umask 022
+ cd /builddir/build/BUILD
+ cd Rsolid
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.8xAvs4
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/R-Rsolid-0.9.31-24.fc29.riscv64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/R-Rsolid-0.9.31-24.fc29.riscv64
BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/R-Rsolid-0.9.31-24.fc29.riscv64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/R-Rsolid-0.9.31-24.fc29.riscv64
+ cd Rsolid
+ mkdir -p /builddir/build/BUILDROOT/R-Rsolid-0.9.31-24.fc29.riscv64/usr/lib64/R/library
+ R CMD INSTALL Rsolid --configure-args=--with-hdf5=/usr -l /builddir/build/BUILDROOT/R-Rsolid-0.9.31-24.fc29.riscv64/usr/lib64/R/library
BUILDSTDERR: * installing *source* package 'Rsolid' ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking hdf5.h usability... yes
checking hdf5.h presence... yes
checking for hdf5.h... yes
configure: creating ./config.status
config.status: creating src/Makevars
BUILDSTDERR: ** libs
gcc -I"/usr/include/R" -DNDEBUG -I/usr/include  -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c Rdriver.c -o Rdriver.o
BUILDSTDERR: Rdriver.c: In function 'rdriver':
BUILDSTDERR: Rdriver.c:271:8: warning: unused variable 'p_yxloc' [-Wunused-variable]
BUILDSTDERR:    SEXP p_yxloc;
BUILDSTDERR:         ^~~~~~~
BUILDSTDERR: Rdriver.c:270:8: warning: unused variable 'p_intensities' [-Wunused-variable]
BUILDSTDERR:    SEXP p_intensities;
BUILDSTDERR:         ^~~~~~~~~~~~~
BUILDSTDERR: Rdriver.c:269:8: warning: unused variable 'ligation_names' [-Wunused-variable]
BUILDSTDERR:    SEXP ligation_names;
BUILDSTDERR:         ^~~~~~~~~~~~~~
BUILDSTDERR: Rdriver.c:268:8: warning: unused variable 'primer_names' [-Wunused-variable]
BUILDSTDERR:    SEXP primer_names;
BUILDSTDERR:         ^~~~~~~~~~~~
BUILDSTDERR: Rdriver.c:266:15: warning: unused variable 'i' [-Wunused-variable]
BUILDSTDERR:    int status, i;
BUILDSTDERR:                ^
BUILDSTDERR: Rdriver.c:264:13: warning: unused variable 'panel_info' [-Wunused-variable]
BUILDSTDERR:    panelInfo panel_info;
BUILDSTDERR:              ^~~~~~~~~~
gcc -I"/usr/include/R" -DNDEBUG -I/usr/include  -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c reader.c -o reader.o
BUILDSTDERR: reader.c: In function 'ligationIter_data':
BUILDSTDERR: reader.c:315:7: warning: unused variable 'offset' [-Wunused-variable]
BUILDSTDERR:    int offset;
BUILDSTDERR:        ^~~~~~
gcc -I"/usr/include/R" -DNDEBUG -I/usr/include  -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c reader_util.c -o reader_util.o
gcc -I"/usr/include/R" -DNDEBUG -I/usr/include  -I/usr/local/include   -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c util.c -o util.o
BUILDSTDERR: util.c: In function 'callBases':
BUILDSTDERR: util.c:163:41: warning: unused variable 'dscore' [-Wunused-variable]
BUILDSTDERR:    double *input=REAL(mat), dtmp, dtmp2, dscore;
BUILDSTDERR:                                          ^~~~~~
BUILDSTDERR: util.c:169:19: warning: 'tmpscore' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    char *tmpchar, *tmpscore;
BUILDSTDERR:                    ^~~~~~~~
gcc -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o Rsolid.so Rdriver.o reader.o reader_util.o util.o -L/usr/lib -lhdf5 -L/usr/lib64/R/lib -lR
BUILDSTDERR: installing to /builddir/build/BUILDROOT/R-Rsolid-0.9.31-24.fc29.riscv64/usr/lib64/R/library/Rsolid/libs
BUILDSTDERR: ** R
BUILDSTDERR: ** data
BUILDSTDERR: ** inst
BUILDSTDERR: ** byte-compile and prepare package for lazy loading
BUILDSTDERR: ** help
BUILDSTDERR: *** installing help indices
  converting help for package 'Rsolid'
BUILDSTDERR:     finding HTML links ... done
BUILDSTDERR:     Rsolid                                  html  
BUILDSTDERR:     finding level-2 HTML links ... done
Rd warning: /builddir/build/BUILD/Rsolid/Rsolid/man/Rsolid.Rd:44: missing link 'snow'
Rd warning: /builddir/build/BUILD/Rsolid/Rsolid/man/Rsolid.Rd:45: missing link 'Rmpi'
BUILDSTDERR: ** building package indices
BUILDSTDERR: ** testing if installed package can be loaded
BUILDSTDERR: * DONE (Rsolid)
+ test -d Rsolid/src
+ cd Rsolid/src
+ rm -f Rdriver.o reader.o reader_util.o util.o Rsolid.so
+ rm -rf /builddir/build/BUILDROOT/R-Rsolid-0.9.31-24.fc29.riscv64/usr/lib64/R/library/R.css
+ rm -rf Rsolid/src/hdf5-1.8.3
+ rm -rf Rsolid/config.status
+ rm -rf Rsolid/configure
+ /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m -i --build-id-seed 0.9.31-24.fc29 --unique-debug-suffix -0.9.31-24.fc29.riscv64 --unique-debug-src-base R-Rsolid-0.9.31-24.fc29.riscv64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/Rsolid
extracting debug info from /builddir/build/BUILDROOT/R-Rsolid-0.9.31-24.fc29.riscv64/usr/lib64/R/library/Rsolid/libs/Rsolid.so
/usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match.
BUILDSTDERR: 72 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
BUILDSTDERR: /sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1
+ /usr/lib/rpm/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.5zk2fW
Processing files: R-Rsolid-0.9.31-24.fc29.riscv64
Provides: R-Rsolid = 0.9.31-24.fc29 R-Rsolid(riscv-64) = 0.9.31-24.fc29
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libhdf5.so.10()(64bit) rtld(GNU_HASH)
Processing files: R-Rsolid-devel-0.9.31-24.fc29.riscv64
Provides: R-Rsolid-devel = 0.9.31-24.fc29 R-Rsolid-devel(riscv-64) = 0.9.31-24.fc29
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: R-Rsolid-debugsource-0.9.31-24.fc29.riscv64
Provides: R-Rsolid-debugsource = 0.9.31-24.fc29 R-Rsolid-debugsource(riscv-64) = 0.9.31-24.fc29
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: R-Rsolid-debuginfo-0.9.31-24.fc29.riscv64
Provides: R-Rsolid-debuginfo = 0.9.31-24.fc29 R-Rsolid-debuginfo(riscv-64) = 0.9.31-24.fc29 debuginfo(build-id) = 492afb2cd65bad82982c1b186dc94f16f44c7ff8
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: R-Rsolid-debugsource(riscv-64) = 0.9.31-24.fc29
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-Rsolid-0.9.31-24.fc29.riscv64
Wrote: /builddir/build/RPMS/R-Rsolid-0.9.31-24.fc29.riscv64.rpm
Wrote: /builddir/build/RPMS/R-Rsolid-devel-0.9.31-24.fc29.riscv64.rpm
Wrote: /builddir/build/RPMS/R-Rsolid-debugsource-0.9.31-24.fc29.riscv64.rpm
Wrote: /builddir/build/RPMS/R-Rsolid-debuginfo-0.9.31-24.fc29.riscv64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.cuXOTM
+ umask 022
+ cd /builddir/build/BUILD
+ cd Rsolid
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/R-Rsolid-0.9.31-24.fc29.riscv64
+ exit 0
Child return code was: 0