TDERR: cigar_utils.c:1064:6: warning: 'Roffset' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: if (offset == Roffset) BUILDSTDERR: ^ BUILDSTDERR: cigar_utils.c:1036:15: note: 'Roffset' was declared here BUILDSTDERR: int Loffset, Roffset, buf_offset; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: cigar_utils.c:1062:6: warning: 'Loffset' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: if (offset == Loffset) BUILDSTDERR: ^ BUILDSTDERR: cigar_utils.c:1036:6: note: 'Loffset' was declared here BUILDSTDERR: int Loffset, Roffset, buf_offset; BUILDSTDERR: ^~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I"/usr/lib64/R/library/S4Vectors/include" -I"/usr/lib64/R/library/IRanges/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c coordinate_mapping_methods.c -o coordinate_mapping_methods.o gcc -I"/usr/include/R" -DNDEBUG -I"/usr/lib64/R/library/S4Vectors/include" -I"/usr/lib64/R/library/IRanges/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c encodeOverlaps_methods.c -o encodeOverlaps_methods.o BUILDSTDERR: encodeOverlaps_methods.c: In function 'overlap_encoding': BUILDSTDERR: encodeOverlaps_methods.c:180:33: warning: 'out_nelt0' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: CharAE_set_nelt(out, out_nelt0 + j2 * nrow); BUILDSTDERR: ~~~~~~~~~~^~~~~~~~~~~ BUILDSTDERR: encodeOverlaps_methods.c:99:6: note: 'out_nelt0' was declared here BUILDSTDERR: int out_nelt0, i, starti, widthi, spacei, j, startj, widthj, spacej, BUILDSTDERR: ^~~~~~~~~ gcc -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o GenomicAlignments.so IRanges_stubs.o R_init_GenomicAlignments.o S4Vectors_stubs.o cigar_utils.o coordinate_mapping_methods.o encodeOverlaps_methods.o -L/usr/lib64/R/lib -lR BUILDSTDERR: installing to /builddir/build/BUILDROOT/R-GenomicAlignments-1.16.0-2.fc30.riscv64/usr/lib64/R/library/GenomicAlignments/libs BUILDSTDERR: ** R BUILDSTDERR: ** inst BUILDSTDERR: ** byte-compile and prepare package for lazy loading BUILDSTDERR: Error: package or namespace load failed for 'Rsamtools' in dyn.load(file, DLLpath = DLLpath, ...): BUILDSTDERR: unable to load shared object '/usr/lib64/R/library/BiocParallel/libs/BiocParallel.so': BUILDSTDERR: /usr/lib64/R/library/BiocParallel/libs/BiocParallel.so: undefined symbol: shm_open BUILDSTDERR: Error : package 'Rsamtools' could not be loaded BUILDSTDERR: ERROR: lazy loading failed for package 'GenomicAlignments' BUILDSTDERR: * removing '/builddir/build/BUILDROOT/R-GenomicAlignments-1.16.0-2.fc30.riscv64/usr/lib64/R/library/GenomicAlignments' BUILDSTDERR: error: Bad exit status from /var/tmp/rpm-tmp.6SAgkk (%install) RPM build errors: BUILDSTDERR: Bad exit status from /var/tmp/rpm-tmp.6SAgkk (%install) Child return code was: 1 EXCEPTION: [Error()] Traceback (most recent call last): File "/usr/lib/python3.7/site-packages/mockbuild/trace_decorator.py", line 96, in trace result = func(*args, **kw) File "/usr/lib/python3.7/site-packages/mockbuild/util.py", line 636, in do raise exception.Error("Command failed: \n # %s\n%s" % (command, output), child.returncode) mockbuild.exception.Error: Command failed: # bash --login -c /usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/R-GenomicAlignments.spec